Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015447

Physical Location & Seq

Genomic Coordinates Forward (+)

27444162 .. 27445466

Gene Structure 1305 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g37330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGAGGCTGATTACTCACAACATGCTGTCTTCCAAGATTAAAGGCGTGACGAACGGCTTCCCTCTGGGTATTGAAGCAGAGAAGGTGGTGGAGAAGCAGGTGGACTTGAATGTTGATTTCCTCAAGAACATGTTTTCTAAGATTGAGTGGAAGGCCCTTGTCTCTGCTTCTCGTACAATGGGGTATGCCGAGCTTCCTGAGGAGGTGGAGCCTTCTAAGCTTGATTCTGAGGAATTCCTGCAAAAGTTCCATCATGCCCTTTTGGAGCTTCATCTTGAGGAAGGTGCTCTTGTTTGCCCTGAGACTGGTCGCCGGTTTCCAGTTTCGAAGGGAATACCTAATATGCTACTTCATGAAGATGAGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006364 GO:0006396 GO:0006399 GO:0006400 GO:0006464 GO:0006479 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008213 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0018364 GO:0019538 GO:0022613 GO:0030488 GO:0031167 GO:0032259 GO:0032501 GO:0032502 GO:0034470 GO:0034641 GO:0034660 GO:0035265 GO:0036211 GO:0036265 GO:0040007 GO:0042127 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048589 GO:0050789 GO:0050794 GO:0051726 GO:0065007 GO:0070475 GO:0070476 GO:0071704 GO:0071840 GO:0090304 GO:1901360 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Trm112p

Protein Analysis

123

Amino Acids

13.83

Weight (kDa)

5.35

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trm112p	PF03966	3 - 111	4.3e-09	Trm112p-like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015447)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22270
fragaria_vesca	FvH4_5g37330
malus_domestica	MD08G1182900.v1.1 MD15G1369300.v1.1
prunus_persica	Prupe.1G517100_v2.0.a1
pyrus_communis	pycom08g15670 pycom15g33060
rosa_chinensis	RchiOBHm_Chr7g0238971
rosa_multiflora	Rmu_sc0004132.1_g000005
rosa_roxburghii	Rroxscaffold_3G00221430
rosa_rugosa	Rorug07G0324100
rosa_samantha	Rh7AG479100 Rh7BG451700 Rh7CG496400 Rh7DG463800
rosa_wichuraiana	Rw7G039990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	88
Acc36I	ACCTGC	1 cut(s)	88
AcsI	RAATTY	1 cut(s)	233
AfaI	GTAC	1 cut(s)	175
AfiI	CCNNNNNNNGG	1 cut(s)	305
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	74, 109
AluBI	AGCT	3 cut(s)	193, 220, 268
AluI	AGCT	3 cut(s)	193, 220, 268
Alw21I	GWGCWC	1 cut(s)	289
Alw26I	GTCTC	2 cut(s)	166, 296
AoxI	GGCC	1 cut(s)	153
ApoI	RAATTY	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	56
AspS9I	GGNCC	1 cut(s)	154
AsuII	TTCGAA	1 cut(s)	326
AxyI	CCTNAGG	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	21
Bbv12I	GWGCWC	1 cut(s)	289
BccI	CCATC	1 cut(s)	258
BceAI	ACGGC	1 cut(s)	70
BcoDI	GTCTC	2 cut(s)	166, 296
BfuAI	ACCTGC	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	210
BpiI	GAAGAC	1 cut(s)	21
Bpu14I	TTCGAA	1 cut(s)	326
BpuEI	CTTGAG	2 cut(s)	107, 296
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse118I	RCCGGY	1 cut(s)	312
Bse1I	ACTGG	2 cut(s)	310, 320
Bse21I	CCTNAGG	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseMII	CTCAG	3 cut(s)	189, 219, 291
BseNI	ACTGG	2 cut(s)	310, 320
BseRI	GAGGAG	1 cut(s)	215
BshFI	GGCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	289
BsiSI	CCGG	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	2 cut(s)	166, 296
BsnI	GGCC	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	326
Bsp1286I	GDGCHC	1 cut(s)	289
BspANI	GGCC	1 cut(s)	155
BspCNI	CTCAG	3 cut(s)	190, 220, 292
BspHI	TCATGA	1 cut(s)	352
BspLI	GGNNCC	1 cut(s)	210
BspMI	ACCTGC	1 cut(s)	88
BspT104I	TTCGAA	1 cut(s)	326
BsrFI	RCCGGY	1 cut(s)	312
BsrI	ACTGG	2 cut(s)	310, 320
BssAI	RCCGGY	1 cut(s)	312
BstBI	TTCGAA	1 cut(s)	326
BstDEI	CTNAG	5 cut(s)	138, 198, 216, 228, 300
BstMAI	GTCTC	2 cut(s)	166, 296
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNSI	RCATGY	2 cut(s)	25, 133
BstV2I	GAAGAC	1 cut(s)	21
Bsu36I	CCTNAGG	1 cut(s)	198
BsuRI	GGCC	1 cut(s)	155
BveI	ACCTGC	1 cut(s)	88
CciI	TCATGA	1 cut(s)	352
Cfr10I	RCCGGY	1 cut(s)	312
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	4 cut(s)	22, 130, 254, 353
CviJI	RGCY	7 cut(s)	7, 57, 155, 193, 211, 220, 268
CviKI_1	RGCY	7 cut(s)	7, 57, 155, 193, 211, 220, 268
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	5 cut(s)	138, 198, 216, 228, 300
Eco81I	CCTNAGG	1 cut(s)	198
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	233
FaeI	CATG	4 cut(s)	25, 133, 257, 356
FaiI	YATR	6 cut(s)	23, 131, 186, 255, 344, 354
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FatI	CATG	4 cut(s)	21, 129, 253, 352
HaeIII	GGCC	1 cut(s)	155
HapII	CCGG	1 cut(s)	313
Hin1II	CATG	4 cut(s)	25, 133, 257, 356
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	1 cut(s)	224
HpaII	CCGG	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	103
Hpy188I	TCNGA	2 cut(s)	229, 368
Hpy188III	TCNNGA	4 cut(s)	124, 197, 275, 353
Hpy8I	GTNNAC	1 cut(s)	103
HpyAV	CCTTC	5 cut(s)	76, 145, 222, 275, 322
HpyCH4V	TGCA	1 cut(s)	241
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
HpyF3I	CTNAG	5 cut(s)	138, 198, 216, 228, 300
Hsp92II	CATG	4 cut(s)	25, 133, 257, 356
LmnI	GCTCC	2 cut(s)	208, 265
LpnPI	CCDG	8 cut(s)	50, 83, 210, 251, 291, 312, 326, 333
MaeIII	GTNAC	1 cut(s)	46
MboII	GAAGA	2 cut(s)	21, 368
MhlI	GDGCHC	1 cut(s)	289
MluCI	AATT	1 cut(s)	233
MnlI	CCTC	7 cut(s)	72, 131, 193, 196, 223, 271, 355
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	1 cut(s)	357
MspI	CCGG	1 cut(s)	313
MwoI	GCNNNNNNNGC	1 cut(s)	217
NlaIII	CATG	4 cut(s)	25, 133, 257, 356
NlaIV	GGNNCC	1 cut(s)	210
NmeAIII	GCCGAG	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	46
NspI	RCATGY	2 cut(s)	25, 133
NspV	TTCGAA	1 cut(s)	326
PagI	TCATGA	1 cut(s)	352
PaqCI	CACCTGC	1 cut(s)	88
PciI	ACATGT	1 cut(s)	129
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	224
PscI	ACATGT	1 cut(s)	129
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	154
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	1 cut(s)	39
Sau96I	GGNCC	1 cut(s)	154
SduI	GDGCHC	1 cut(s)	289
SetI	ASST	9 cut(s)	87, 102, 195, 207, 222, 270, 286, 340, 366
SfuI	TTCGAA	1 cut(s)	326
SmiMI	CAYNNNNRTG	1 cut(s)	357
SmlI	CTYRAG	2 cut(s)	122, 275
SmoI	CTYRAG	2 cut(s)	122, 275
Sse9I	AATT	1 cut(s)	233
TaqI	TCGA	1 cut(s)	326
TasI	AATT	1 cut(s)	233
TfiI	GAWTC	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TseFI	GTSAC	1 cut(s)	46
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	3 cut(s)	260, 341, 369
XapI	RAATTY	1 cut(s)	233
XceI	RCATGY	2 cut(s)	25, 133
XmnI	GAANNNNTTC	1 cut(s)	56

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.