Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015311

Physical Location & Seq

Genomic Coordinates Forward (+)

8664097 .. 8665569

Gene Structure 1473 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G24450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCGACTCTTCGTTTCACTCTACTTCTTCTTGTCTTCGTCGTCGGGATCTTCTTCTCCTTCTCCTCCGTTTCTCATGTACGTGCAACAAGTGAAATCAATCTCAGGATCGAACCATTTTCCTCGCCGTTCGCGACGGATCTTGCAAAGCTGCAAACTCAAATTGGCTACAAGTTTAACAACATCAACCTTCTTCGCCGTGCAATGACTCATGCTTCTTTTTCTCAAGAGAACAACAAAGCCTTGAGTATCTTTGGAACCCATATCATTGAAACCGCGGTCTCTCTTCAGTTTCTCGCTAAAGATATCGATATTTCCTCGAAAGCACTGGGCCGTTTGATATCAGAGGTTTCAAATGTGGAGTCCTCATGTGCTCTTGACGGAGACCGGTTGGGTTTGGGGAAGATAATCAGAGTTTCTACTAAGACAGATGCATCGAACTCGGCCATTCTTTGTACTGGCTTTAGGGCAATCTTTGGAGCTATAGCTATTGATGCTGGAACGGTTGATGAAGCCATCAAGGTTTTCTGGAAGGTACATGGAGCTCGAGCTGGAAGACTAGTCTCTATGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0030154 GO:0032296 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonucleas_3_3

Protein Analysis

191

Amino Acids

20.74

Weight (kDa)

9.51

Isoelectric Point (pI)

41.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	62 - 168	4.8e-12	Ribonuclease-III-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0015311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24450
fragaria_vesca	FvH4_5g05090
malus_domestica	MD14G1183800.v1.1
prunus_persica	Prupe.5G176500_v2.0.a1
pyrus_communis	pycom14g15290
rosa_chinensis	RchiOBHm_Chr7g0193911
rosa_laevigata	RLG00000004234 RLG00000028758
rosa_multiflora	Rmu_sc0002389.1_g000010
rosa_roxburghii	Rroxscaffold_3G00261710
rosa_rugosa	Rorug07G0012800
rosa_samantha	Rh7AG139600 Rh7BG140100 Rh7CG143800 Rh7DG141000
rosa_wichuraiana	Rw7G011910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	134, 278
AciI	CCGC	2 cut(s)	276, 278
AclWI	GGATC	3 cut(s)	56, 116, 147
AcoI	YGGCCR	1 cut(s)	444
AcuI	CTGAAG	1 cut(s)	272
AfaI	GTAC	3 cut(s)	81, 457, 537
AgeI	ACCGGT	1 cut(s)	387
AgsI	TTSAA	2 cut(s)	272, 354
AhlI	ACTAGT	1 cut(s)	559
AluBI	AGCT	5 cut(s)	151, 482, 488, 545, 551
AluI	AGCT	5 cut(s)	151, 482, 488, 545, 551
Alw21I	GWGCWC	2 cut(s)	376, 547
Alw26I	GTCTC	3 cut(s)	286, 378, 568
AlwI	GGATC	3 cut(s)	56, 116, 147
Ama87I	CYCGRG	1 cut(s)	546
AoxI	GGCC	2 cut(s)	331, 444
ApeKI	GCWGC	1 cut(s)	151
ArsI	GACNNNNNNTTYG	2 cut(s)	347, 379
AsiGI	ACCGGT	1 cut(s)	387
AspS9I	GGNCC	1 cut(s)	331
AvaI	CYCGRG	1 cut(s)	546
BanII	GRGCYC	1 cut(s)	547
BbsI	GAAGAC	2 cut(s)	28, 562
Bbv12I	GWGCWC	2 cut(s)	376, 547
BbvI	GCAGC	1 cut(s)	138
BccI	CCATC	1 cut(s)	524
BceAI	ACGGC	3 cut(s)	112, 183, 318
BcgI	CGANNNNNNTGC	2 cut(s)	423, 457
BcoDI	GTCTC	3 cut(s)	286, 378, 568
BcuI	ACTAGT	1 cut(s)	559
BfaI	CTAG	1 cut(s)	560
BfmI	CTRYAG	1 cut(s)	483
BisI	GCNGC	1 cut(s)	152
BlsI	GCNGC	1 cut(s)	153
BmeT110I	CYCGRG	1 cut(s)	546
BmgT120I	GGNCC	1 cut(s)	331
BmiI	GGNNCC	1 cut(s)	259
BmrI	ACTGGG	1 cut(s)	338
BmsI	GCATC	3 cut(s)	421, 443, 484
BmuI	ACTGGG	1 cut(s)	338
BpiI	GAAGAC	2 cut(s)	28, 562
BpuEI	CTTGAG	2 cut(s)	210, 265
Bsa29I	ATCGAT	1 cut(s)	309
BsaAI	YACGTR	1 cut(s)	83
BsaI	GGTCTC	2 cut(s)	286, 378
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	387
Bse118I	RCCGGY	1 cut(s)	387
Bse1I	ACTGG	2 cut(s)	333, 463
Bse3DI	GCAATG	1 cut(s)	210
BseCI	ATCGAT	1 cut(s)	309
BseDI	CCNNGG	1 cut(s)	276
BseMI	GCAATG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	118
BseNI	ACTGG	2 cut(s)	333, 463
BseRI	GAGGAG	1 cut(s)	55
BseXI	GCAGC	1 cut(s)	138
Bsh1236I	CGCG	2 cut(s)	134, 278
BshFI	GGCC	2 cut(s)	333, 446
BshTI	ACCGGT	1 cut(s)	387
BshVI	ATCGAT	1 cut(s)	309
BsiHKAI	GWGCWC	2 cut(s)	376, 547
BsiHKCI	CYCGRG	1 cut(s)	546
BsiSI	CCGG	1 cut(s)	388
BsmAI	GTCTC	3 cut(s)	286, 378, 568
BsnI	GGCC	2 cut(s)	333, 446
Bso31I	GGTCTC	2 cut(s)	286, 378
BsoBI	CYCGRG	1 cut(s)	546
Bsp1286I	GDGCHC	2 cut(s)	376, 547
Bsp143I	GATC	3 cut(s)	48, 108, 139
Bsp68I	TCGCGA	1 cut(s)	134
BspACI	CCGC	2 cut(s)	276, 278
BspANI	GGCC	2 cut(s)	333, 446
BspCNI	CTCAG	1 cut(s)	117
BspDI	ATCGAT	1 cut(s)	309
BspFNI	CGCG	2 cut(s)	134, 278
BspLI	GGNNCC	1 cut(s)	259
BspPI	GGATC	3 cut(s)	56, 116, 147
BspTNI	GGTCTC	2 cut(s)	286, 378
BsrDI	GCAATG	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	387
BsrI	ACTGG	2 cut(s)	333, 463
BssAI	RCCGGY	1 cut(s)	387
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	3 cut(s)	48, 108, 139
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	2 cut(s)	15, 291
BstBAI	YACGTR	1 cut(s)	83
BstDEI	CTNAG	2 cut(s)	104, 423
BstDSI	CCRYGG	1 cut(s)	276
BstFNI	CGCG	2 cut(s)	134, 278
BstKTI	GATC	3 cut(s)	51, 111, 142
BstMAI	GTCTC	3 cut(s)	286, 378, 568
BstMBI	GATC	3 cut(s)	48, 108, 139
BstMWI	GCNNNNNNNGC	1 cut(s)	494
BstSFI	CTRYAG	1 cut(s)	483
BstUI	CGCG	2 cut(s)	134, 278
BstV1I	GCAGC	1 cut(s)	138
BstV2I	GAAGAC	2 cut(s)	28, 562
BstX2I	RGATCY	2 cut(s)	48, 139
BstYI	RGATCY	2 cut(s)	48, 139
Bsu15I	ATCGAT	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	333, 446
BsuTUI	ATCGAT	1 cut(s)	309
BtgI	CCRYGG	1 cut(s)	276
BtsIMutI	CAGTG	1 cut(s)	326
BtuMI	TCGCGA	1 cut(s)	134
Cfr10I	RCCGGY	1 cut(s)	387
Cfr13I	GGNCC	1 cut(s)	331
Cfr42I	CCGCGG	1 cut(s)	279
ClaI	ATCGAT	1 cut(s)	309
Csp6I	GTAC	3 cut(s)	80, 456, 536
CspAI	ACCGGT	1 cut(s)	387
CviAII	CATG	4 cut(s)	77, 212, 369, 539
CviQI	GTAC	3 cut(s)	80, 456, 536
DdeI	CTNAG	2 cut(s)	104, 423
DpnI	GATC	3 cut(s)	50, 110, 141
DpnII	GATC	3 cut(s)	48, 108, 139
EaeI	YGGCCR	1 cut(s)	444
Eam1104I	CTCTTC	2 cut(s)	15, 291
EarI	CTCTTC	2 cut(s)	15, 291
Ecl136II	GAGCTC	1 cut(s)	545
Eco24I	GRGCYC	1 cut(s)	547
Eco31I	GGTCTC	2 cut(s)	286, 378
Eco32I	GATATC	2 cut(s)	307, 342
Eco53kI	GAGCTC	1 cut(s)	545
Eco57I	CTGAAG	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	546
EcoICRI	GAGCTC	1 cut(s)	545
EcoRV	GATATC	2 cut(s)	307, 342
EcoT22I	ATGCAT	1 cut(s)	436
EcoT38I	GRGCYC	1 cut(s)	547
FaeI	CATG	4 cut(s)	80, 215, 372, 542
FaiI	YATR	7 cut(s)	78, 213, 264, 370, 485, 540, 569
FatI	CATG	4 cut(s)	76, 211, 368, 538
Fnu4HI	GCNGC	1 cut(s)	152
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	1 cut(s)	152
FspBI	CTAG	1 cut(s)	560
GluI	GCNGC	1 cut(s)	152
HaeIII	GGCC	2 cut(s)	333, 446
HapII	CCGG	1 cut(s)	388
Hin1II	CATG	4 cut(s)	80, 215, 372, 542
HinfI	GANTC	3 cut(s)	7, 208, 362
HpaII	CCGG	1 cut(s)	388
Hpy188I	TCNGA	2 cut(s)	346, 413
Hpy188III	TCNNGA	6 cut(s)	46, 106, 133, 227, 377, 529
Hpy99I	CGWCG	3 cut(s)	44, 47, 139
HpyAV	CCTTC	3 cut(s)	70, 200, 526
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	5 cut(s)	86, 146, 154, 203, 434
HpyF10VI	GCNNNNNNNGC	1 cut(s)	494
HpyF3I	CTNAG	2 cut(s)	104, 423
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	4 cut(s)	80, 215, 372, 542
KspI	CCGCGG	1 cut(s)	279
Kzo9I	GATC	3 cut(s)	48, 108, 139
LmnI	GCTCC	2 cut(s)	479, 542
LpnPI	CCDG	7 cut(s)	91, 314, 401, 444, 483, 514, 537
Lsp1109I	GCAGC	1 cut(s)	138
LweI	GCATC	3 cut(s)	421, 443, 484
MaeI	CTAG	1 cut(s)	560
MaeII	ACGT	1 cut(s)	82
MalI	GATC	3 cut(s)	50, 110, 141
MboI	GATC	3 cut(s)	48, 108, 139
MboII	GAAGA	8 cut(s)	20, 28, 43, 46, 185, 278, 415, 567
MflI	RGATCY	2 cut(s)	48, 139
MhlI	GDGCHC	2 cut(s)	376, 547
MluCI	AATT	1 cut(s)	162
MlyI	GAGTC	2 cut(s)	202, 371
MnlI	CCTC	5 cut(s)	76, 133, 328, 340, 376
Mph1103I	ATGCAT	1 cut(s)	436
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	1 cut(s)	388
MvnI	CGCG	2 cut(s)	134, 278
MwoI	GCNNNNNNNGC	1 cut(s)	494
NdeII	GATC	3 cut(s)	48, 108, 139
NlaIII	CATG	4 cut(s)	80, 215, 372, 542
NlaIV	GGNNCC	1 cut(s)	259
NmeAIII	GCCGAG	1 cut(s)	422
NruI	TCGCGA	1 cut(s)	134
NsiI	ATGCAT	1 cut(s)	436
PaeR7I	CTCGAG	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PinAI	ACCGGT	1 cut(s)	387
PkrI	GCNGC	1 cut(s)	153
PleI	GAGTC	2 cut(s)	202, 370
PpsI	GAGTC	2 cut(s)	202, 370
Ppu21I	YACGTR	1 cut(s)	83
Psp124BI	GAGCTC	1 cut(s)	547
PspN4I	GGNNCC	1 cut(s)	259
PspPI	GGNCC	1 cut(s)	331
PspXI	VCTCGAGB	1 cut(s)	546
PsuI	RGATCY	2 cut(s)	48, 139
RruI	TCGCGA	1 cut(s)	134
RsaI	GTAC	3 cut(s)	81, 457, 537
RsaNI	GTAC	3 cut(s)	80, 456, 536
RseI	CAYNNNNRTG	1 cut(s)	81
SacI	GAGCTC	1 cut(s)	547
SacII	CCGCGG	1 cut(s)	279
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	152
Sau3AI	GATC	3 cut(s)	48, 108, 139
Sau96I	GGNCC	1 cut(s)	331
SchI	GAGTC	2 cut(s)	202, 371
SduI	GDGCHC	2 cut(s)	376, 547
SfaNI	GCATC	3 cut(s)	421, 443, 484
SfcI	CTRYAG	1 cut(s)	483
Sfr274I	CTCGAG	1 cut(s)	546
Sfr303I	CCGCGG	1 cut(s)	279
SgrBI	CCGCGG	1 cut(s)	279
SlaI	CTCGAG	1 cut(s)	546
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	3 cut(s)	225, 244, 546
SmoI	CTYRAG	3 cut(s)	225, 244, 546
SpeI	ACTAGT	1 cut(s)	559
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	2 cut(s)	276, 278
SspMI	CTAG	1 cut(s)	560
SstI	GAGCTC	1 cut(s)	547
TaaI	ACNGT	1 cut(s)	505
TaiI	ACGT	1 cut(s)	85
TaqI	TCGA	5 cut(s)	111, 309, 320, 437, 547
TasI	AATT	1 cut(s)	162
TatI	WGTACW	1 cut(s)	455
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TscAI	CASTG	1 cut(s)	333
TseI	GCWGC	1 cut(s)	151
TspDTI	ATGAA	1 cut(s)	525
TspGWI	ACGGA	3 cut(s)	58, 152, 396
TspRI	CASTG	1 cut(s)	333
XhoI	CTCGAG	1 cut(s)	546
XspI	CTAG	1 cut(s)	560
Zsp2I	ATGCAT	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.