Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp05

Orthogroup ID

OG0015311

Physical Location & Seq

Genomic Coordinates Forward (+)

14964670 .. 14965969

Gene Structure 1300 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.5G176500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGCTCGTCGTTGTTTCGCTCTGTTCACCATTTTCGTCTTCGCAATCGTTCCTCATATTCAGGGTATCGCGACCAATGATCAACGTGCGCAGATCTCCGTACGCTCATCGCCATTTGAAACAGCCCTCGCAACCCTTCAGAAGCAAATTGGCTATAATTTCCAAAAACCTGGGCTCCTTCGCCGGTCAATGACCCATGCCTCCTTCTCTGAAGAGAATAACAGGGCTCTGAGCATTTTGGGCGCCAATGTCATAGAAACATCAGCCTCTCTACGACTGCTTGAAAAAGACCTTGATATTTCTGCAAAAGAATTGAACCGTCGTGTTTCAGAGATATCCAAAGTAGAATCTTCCTGTGCCGCTGACGGGTTGCGCTTGGGGTTGCATAAGGTGGTTAGAGTCTCTCCCAAGACTGATTCTTCCACCCCTTTGGTGGTTTGTGGGGCTTTCAGAGCAATCTTTGGCGCTATTGCTATTGATGTAGGGAAGTCCGATGATGCTGGAAGCTATTTCTGGGGTGTTCATGGCGGTCAAGTTGGCGGAGCTCTTGCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0030154 GO:0032296 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonucleas_3_3

Protein Analysis

186

Amino Acids

19.92

Weight (kDa)

9.36

Isoelectric Point (pI)

48.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24450
fragaria_vesca	FvH4_5g05090
malus_domestica	MD14G1183800.v1.1
prunus_persica	Prupe.5G176500_v2.0.a1
pyrus_communis	pycom14g15290
rosa_chinensis	RchiOBHm_Chr7g0193911
rosa_laevigata	RLG00000004234 RLG00000028758
rosa_multiflora	Rmu_sc0002389.1_g000010
rosa_roxburghii	Rroxscaffold_3G00261710
rosa_rugosa	Rorug07G0012800
rosa_samantha	Rh7AG139600 Rh7BG140100 Rh7CG143800 Rh7DG141000
rosa_wichuraiana	Rw7G011910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	90
AccB1I	GGYRCC	1 cut(s)	242
AccII	CGCG	1 cut(s)	71
AciI	CCGC	3 cut(s)	360, 528, 540
AcuI	CTGAAG	2 cut(s)	122, 231
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	2 cut(s)	366, 433
AgsI	TTSAA	3 cut(s)	119, 284, 316
AjnI	CCWGG	1 cut(s)	169
AluBI	AGCT	2 cut(s)	507, 545
AluI	AGCT	2 cut(s)	507, 545
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	1 cut(s)	406
AspLEI	GCGC	4 cut(s)	91, 245, 375, 467
AsuHPI	GGTGA	1 cut(s)	19
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	3 cut(s)	177, 229, 547
BbsI	GAAGAC	1 cut(s)	31
Bbv12I	GWGCWC	1 cut(s)	547
BciT130I	CCWGG	1 cut(s)	171
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	406
BfoI	RGCGCY	2 cut(s)	246, 468
BglII	AGATCT	1 cut(s)	93
BisI	GCNGC	1 cut(s)	360
BlsI	GCNGC	1 cut(s)	361
Bme1390I	CCNGG	1 cut(s)	171
BmiI	GGNNCC	2 cut(s)	176, 244
BmrFI	CCNGG	1 cut(s)	171
BmsI	GCATC	1 cut(s)	487
BpiI	GAAGAC	1 cut(s)	31
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	1 cut(s)	170
BsaXI	ACNNNNNCTCC	2 cut(s)	159, 189
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 433
Bse118I	RCCGGY	1 cut(s)	183
Bse3DI	GCAATG	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	170
BseLI	CCNNNNNNNGG	2 cut(s)	366, 433
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	1 cut(s)	221
Bsh1236I	CGCG	1 cut(s)	71
BshNI	GGYRCC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	547
BsiSI	CCGG	1 cut(s)	184
BsiWI	CGTACG	1 cut(s)	100
BslI	CCNNNNNNNGG	2 cut(s)	366, 433
BsmAI	GTCTC	1 cut(s)	406
Bsp1286I	GDGCHC	3 cut(s)	177, 229, 547
Bsp143I	GATC	2 cut(s)	79, 93
Bsp68I	TCGCGA	1 cut(s)	71
BspACI	CCGC	3 cut(s)	360, 528, 540
BspCNI	CTCAG	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	71
BspLI	GGNNCC	2 cut(s)	176, 244
BspT107I	GGYRCC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	558
BsrFI	RCCGGY	1 cut(s)	183
BssAI	RCCGGY	1 cut(s)	183
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	2 cut(s)	79, 93
BssNI	GRCGYC	1 cut(s)	243
Bst2UI	CCWGG	1 cut(s)	171
Bst4CI	ACNGT	1 cut(s)	320
Bst6I	CTCTTC	1 cut(s)	207
BstACI	GRCGYC	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	230
BstFNI	CGCG	1 cut(s)	71
BstH2I	RGCGCY	2 cut(s)	246, 468
BstHHI	GCGC	4 cut(s)	91, 245, 375, 467
BstKTI	GATC	2 cut(s)	82, 96
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	2 cut(s)	79, 93
BstMWI	GCNNNNNNNGC	2 cut(s)	240, 452
BstNI	CCWGG	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	169
BstUI	CGCG	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	93
BstXI	CCANNNNNNTGG	2 cut(s)	170, 430
BstYI	RGATCY	1 cut(s)	93
BtgZI	GCGATG	1 cut(s)	93
BtuMI	TCGCGA	1 cut(s)	71
CfoI	GCGC	4 cut(s)	91, 245, 375, 467
Cfr10I	RCCGGY	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	2 cut(s)	197, 524
CviJI	RGCY	9 cut(s)	5, 125, 153, 175, 227, 266, 446, 507, 545
CviKI_1	RGCY	9 cut(s)	5, 125, 153, 175, 227, 266, 446, 507, 545
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	1 cut(s)	230
DinI	GGCGCC	1 cut(s)	244
DpnI	GATC	2 cut(s)	81, 95
DpnII	GATC	2 cut(s)	79, 93
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
EciI	GGCGGA	1 cut(s)	555
Ecl136II	GAGCTC	1 cut(s)	545
Eco24I	GRGCYC	3 cut(s)	177, 229, 547
Eco32I	GATATC	1 cut(s)	336
Eco53kI	GAGCTC	1 cut(s)	545
Eco57I	CTGAAG	2 cut(s)	122, 231
EcoICRI	GAGCTC	1 cut(s)	545
EcoRII	CCWGG	1 cut(s)	169
EcoRV	GATATC	1 cut(s)	336
EcoT38I	GRGCYC	3 cut(s)	177, 229, 547
EgeI	GGCGCC	1 cut(s)	244
EheI	GGCGCC	1 cut(s)	244
FaeI	CATG	2 cut(s)	200, 527
FaiI	YATR	6 cut(s)	57, 156, 198, 254, 387, 525
FatI	CATG	2 cut(s)	196, 523
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	360
FriOI	GRGCYC	3 cut(s)	177, 229, 547
Fsp4HI	GCNGC	1 cut(s)	360
FspI	TGCGCA	1 cut(s)	90
GlaI	GCGC	4 cut(s)	90, 244, 374, 466
GluI	GCNGC	1 cut(s)	360
HaeII	RGCGCY	2 cut(s)	246, 468
HapII	CCGG	1 cut(s)	184
HhaI	GCGC	4 cut(s)	91, 245, 375, 467
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	2 cut(s)	200, 527
Hin6I	GCGC	4 cut(s)	89, 243, 373, 465
HinP1I	GCGC	4 cut(s)	89, 243, 373, 465
HinfI	GANTC	3 cut(s)	347, 399, 416
HpaII	CCGG	1 cut(s)	184
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	6 cut(s)	141, 211, 231, 331, 452, 493
Hpy188III	TCNNGA	1 cut(s)	70
Hpy8I	GTNNAC	1 cut(s)	27
Hpy99I	CGWCG	2 cut(s)	12, 324
HpyAV	CCTTC	3 cut(s)	146, 188, 214
HpyCH4III	ACNGT	1 cut(s)	320
HpyCH4IV	ACGT	1 cut(s)	85
HpyCH4V	TGCA	3 cut(s)	305, 385, 551
HpyF10VI	GCNNNNNNNGC	2 cut(s)	240, 452
HpyF3I	CTNAG	1 cut(s)	230
HpySE526I	ACGT	1 cut(s)	85
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	2 cut(s)	200, 527
HspAI	GCGC	4 cut(s)	89, 243, 373, 465
KasI	GGCGCC	1 cut(s)	242
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	79, 93
LmnI	GCTCC	2 cut(s)	180, 542
LpnPI	CCDG	8 cut(s)	47, 156, 183, 197, 208, 367, 486, 499
LweI	GCATC	1 cut(s)	487
MaeII	ACGT	1 cut(s)	85
MalI	GATC	2 cut(s)	81, 95
MboI	GATC	2 cut(s)	79, 93
MboII	GAAGA	4 cut(s)	31, 224, 342, 411
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	3 cut(s)	177, 229, 547
MluCI	AATT	3 cut(s)	147, 157, 311
Mly113I	GGCGCC	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	408
MnlI	CCTC	4 cut(s)	63, 137, 211, 277
MspA1I	CMGCKG	1 cut(s)	362
MspI	CCGG	1 cut(s)	184
MspR9I	CCNGG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	171
MvnI	CGCG	1 cut(s)	71
MwoI	GCNNNNNNNGC	2 cut(s)	240, 452
NarI	GGCGCC	1 cut(s)	243
NdeII	GATC	2 cut(s)	79, 93
NlaIII	CATG	2 cut(s)	200, 527
NlaIV	GGNNCC	2 cut(s)	176, 244
NruI	TCGCGA	1 cut(s)	71
NsbI	TGCGCA	1 cut(s)	90
PfeI	GAWTC	2 cut(s)	347, 416
Pfl23II	CGTACG	1 cut(s)	100
PkrI	GCNGC	1 cut(s)	361
PleI	GAGTC	1 cut(s)	407
PluTI	GGCGCC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	407
Psp124BI	GAGCTC	1 cut(s)	547
Psp6I	CCWGG	1 cut(s)	169
PspGI	CCWGG	1 cut(s)	169
PspLI	CGTACG	1 cut(s)	100
PspN4I	GGNNCC	2 cut(s)	176, 244
PsuI	RGATCY	1 cut(s)	93
RruI	TCGCGA	1 cut(s)	71
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
SacI	GAGCTC	1 cut(s)	547
SatI	GCNGC	1 cut(s)	360
Sau3AI	GATC	2 cut(s)	79, 93
SchI	GAGTC	1 cut(s)	408
ScrFI	CCNGG	1 cut(s)	171
SduI	GDGCHC	3 cut(s)	177, 229, 547
SetI	ASST	6 cut(s)	88, 172, 294, 393, 509, 547
SfaNI	GCATC	1 cut(s)	487
SfoI	GGCGCC	1 cut(s)	244
Sse9I	AATT	3 cut(s)	147, 157, 311
SsiI	CCGC	3 cut(s)	360, 528, 540
SspDI	GGCGCC	1 cut(s)	242
SstI	GAGCTC	1 cut(s)	547
StyD4I	CCNGG	1 cut(s)	169
TaaI	ACNGT	1 cut(s)	320
TaiI	ACGT	1 cut(s)	88
TasI	AATT	3 cut(s)	147, 157, 311
TauI	GCSGC	1 cut(s)	362
TfiI	GAWTC	2 cut(s)	347, 416
TspDTI	ATGAA	1 cut(s)	512
TspGWI	ACGGA	1 cut(s)	88
XcmI	CCANNNNNNNNNTGG	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.