Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0015311

Physical Location & Seq

Genomic Coordinates Forward (+)

10421596 .. 10422828

Gene Structure 1233 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG140100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGTTCCTCGTGGTTTCACTGTGATCACCATCTTCGTCTTCGCAATCGTTCCTCATATTCAGGGTTTCGCAATCAGTGAACAAGATGGGAAAATCTCCATGCGATCATCGCCGTTTGAAACCGCCCTCATAACCCTTCAGGGGCAAATTGGCTATAAATTCCAAAAAATTAGTCTCCTTCGGCGCGCAATGACTCATGCCTCATTCTCTGAAGAGAACAACAAGGCACTGAGCATTTTGGGCGGCAATATCATAGACACATCGGTCTCTCTACGACTACTTAAGAAAAATATTGAGATTTCTTCAAAAGAAATGAACCATCGCATTTCAGAGATCTCCAAGGTTGAATCTTCCTGTGCTGCTGATGGGTTGCGATTGGGGTTGCATAAGGTGGTTAGAGTCTCTCCCAAGACTGACTCTTCAGCTCCAGCGGTGGTTTGTGGGGCTTTCAGAGCAATCTTTGGTGCTATTGCTTTAGATGTTGGGAAGTCTGATGATGCTGGAAGCATTTTCTGGGTTGTTCATGGTGGTGAAGTTGGAGGAGTTATGGCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0030154 GO:0032296 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonucleas_3_3

Protein Analysis

185

Amino Acids

19.83

Weight (kDa)

9.23

Isoelectric Point (pI)

52.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	58 - 164	1.3e-11	Ribonuclease-III-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24450
fragaria_vesca	FvH4_5g05090
malus_domestica	MD14G1183800.v1.1
prunus_persica	Prupe.5G176500_v2.0.a1
pyrus_communis	pycom14g15290
rosa_chinensis	RchiOBHm_Chr7g0193911
rosa_laevigata	RLG00000004234 RLG00000028758
rosa_multiflora	Rmu_sc0002389.1_g000010
rosa_roxburghii	Rroxscaffold_3G00261710
rosa_rugosa	Rorug07G0012800
rosa_samantha	Rh7AG139600 Rh7BG140100 Rh7CG143800 Rh7DG141000
rosa_wichuraiana	Rw7G011910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	263
AccII	CGCG	1 cut(s)	186
AciI	CCGC	3 cut(s)	123, 243, 431
AcsI	RAATTY	1 cut(s)	158
AcuI	CTGAAG	3 cut(s)	122, 231, 405
AfiI	CCNNNNNNNGG	1 cut(s)	141
AflII	CTTAAG	1 cut(s)	281
AgsI	TTSAA	3 cut(s)	119, 306, 347
AluBI	AGCT	1 cut(s)	425
AluI	AGCT	1 cut(s)	425
Alw26I	GTCTC	3 cut(s)	179, 271, 406
ApeKI	GCWGC	1 cut(s)	359
ApoI	RAATTY	1 cut(s)	158
ArsI	GACNNNNNNTTYG	2 cut(s)	157, 189
AspLEI	GCGC	2 cut(s)	186, 188
AsuHPI	GGTGA	2 cut(s)	19, 542
BauI	CACGAG	1 cut(s)	9
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	1 cut(s)	346
BccI	CCATC	4 cut(s)	38, 80, 327, 359
BceAI	ACGGC	1 cut(s)	97
BclI	TGATCA	1 cut(s)	24
BcoDI	GTCTC	3 cut(s)	179, 271, 406
BfrI	CTTAAG	1 cut(s)	281
BglII	AGATCT	1 cut(s)	333
BisI	GCNGC	2 cut(s)	244, 360
BlsI	GCNGC	2 cut(s)	245, 361
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	487
BpiI	GAAGAC	1 cut(s)	31
BpmI	CTGGAG	1 cut(s)	411
BsaBI	GATNNNNATC	1 cut(s)	29
BsaI	GGTCTC	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	339
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse3DI	GCAATG	1 cut(s)	195
Bse8I	GATNNNNATC	1 cut(s)	29
BseDI	CCNNGG	1 cut(s)	339
BseJI	GATNNNNATC	1 cut(s)	29
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	221
BsePI	GCGCGC	1 cut(s)	184
BseRI	GAGGAG	1 cut(s)	555
BseXI	GCAGC	1 cut(s)	346
Bsh1236I	CGCG	1 cut(s)	186
BslI	CCNNNNNNNGG	1 cut(s)	141
BsmAI	GTCTC	3 cut(s)	179, 271, 406
Bso31I	GGTCTC	1 cut(s)	271
Bsp143I	GATC	3 cut(s)	24, 104, 333
BspACI	CCGC	3 cut(s)	123, 243, 431
BspCNI	CTCAG	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	6
BspTI	CTTAAG	1 cut(s)	281
BspTNI	GGTCTC	1 cut(s)	271
BsrDI	GCAATG	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	339
BssHII	GCGCGC	1 cut(s)	184
BssMI	GATC	3 cut(s)	24, 104, 333
BssSI	CACGAG	1 cut(s)	9
BssT1I	CCWWGG	1 cut(s)	339
Bst2BI	CACGAG	1 cut(s)	9
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	2 cut(s)	207, 424
BstAFI	CTTAAG	1 cut(s)	281
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	230
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	2 cut(s)	186, 188
BstKTI	GATC	3 cut(s)	27, 107, 336
BstMAI	GTCTC	3 cut(s)	179, 271, 406
BstMBI	GATC	3 cut(s)	24, 104, 333
BstMWI	GCNNNNNNNGC	3 cut(s)	109, 240, 452
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	346
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	333
BstYI	RGATCY	1 cut(s)	333
BtgZI	GCGATG	2 cut(s)	93, 305
BtsIMutI	CAGTG	3 cut(s)	18, 82, 227
Cac8I	GCNNGC	1 cut(s)	186
CfoI	GCGC	2 cut(s)	186, 188
CviAII	CATG	3 cut(s)	100, 197, 524
CviJI	RGCY	3 cut(s)	153, 425, 446
CviKI_1	RGCY	3 cut(s)	153, 425, 446
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	3 cut(s)	26, 106, 335
DpnII	GATC	3 cut(s)	24, 104, 333
DrdI	GACNNNNNNGTC	1 cut(s)	263
DseDI	GACNNNNNNGTC	1 cut(s)	263
Eam1104I	CTCTTC	2 cut(s)	207, 424
EarI	CTCTTC	2 cut(s)	207, 424
Eco130I	CCWWGG	1 cut(s)	339
Eco31I	GGTCTC	1 cut(s)	271
Eco57I	CTGAAG	3 cut(s)	122, 231, 405
EcoT14I	CCWWGG	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	3 cut(s)	103, 200, 527
FaiI	YATR	9 cut(s)	57, 101, 131, 156, 198, 254, 387, 525, 548
FatI	CATG	3 cut(s)	99, 196, 523
FbaI	TGATCA	1 cut(s)	24
Fnu4HI	GCNGC	2 cut(s)	244, 360
Fsp4HI	GCNGC	2 cut(s)	244, 360
GlaI	GCGC	2 cut(s)	185, 187
GluI	GCNGC	2 cut(s)	244, 360
GsuI	CTGGAG	1 cut(s)	411
HhaI	GCGC	2 cut(s)	186, 188
Hin1II	CATG	3 cut(s)	103, 200, 527
Hin6I	GCGC	2 cut(s)	184, 186
HinP1I	GCGC	2 cut(s)	184, 186
HinfI	GANTC	4 cut(s)	193, 347, 399, 416
HphI	GGTGA	2 cut(s)	19, 542
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	4 cut(s)	211, 331, 452, 493
Hpy8I	GTNNAC	1 cut(s)	80
HpyAV	CCTTC	2 cut(s)	146, 188
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	1 cut(s)	385
HpyF10VI	GCNNNNNNNGC	3 cut(s)	109, 240, 452
HpyF3I	CTNAG	1 cut(s)	230
Hsp92II	CATG	3 cut(s)	103, 200, 527
HspAI	GCGC	2 cut(s)	184, 186
Ksp22I	TGATCA	1 cut(s)	24
Kzo9I	GATC	3 cut(s)	24, 104, 333
LmnI	GCTCC	1 cut(s)	430
LpnPI	CCDG	6 cut(s)	47, 125, 367, 441, 486, 499
Lsp1109I	GCAGC	1 cut(s)	346
LweI	GCATC	1 cut(s)	487
MalI	GATC	3 cut(s)	26, 106, 335
MboI	GATC	3 cut(s)	24, 104, 333
MboII	GAAGA	6 cut(s)	25, 31, 224, 294, 342, 411
MflI	RGATCY	1 cut(s)	333
MluCI	AATT	4 cut(s)	147, 158, 168, 552
MlyI	GAGTC	3 cut(s)	187, 408, 410
MmeI	TCCRAC	1 cut(s)	517
MnlI	CCTC	5 cut(s)	18, 63, 137, 211, 533
MseI	TTAA	2 cut(s)	282, 556
MslI	CAYNNNNRTG	1 cut(s)	528
MspA1I	CMGCKG	1 cut(s)	431
MspCI	CTTAAG	1 cut(s)	281
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	3 cut(s)	109, 240, 452
NdeII	GATC	3 cut(s)	24, 104, 333
NlaIII	CATG	3 cut(s)	103, 200, 527
NlaIV	GGNNCC	1 cut(s)	6
PauI	GCGCGC	1 cut(s)	184
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	245, 361
PleI	GAGTC	3 cut(s)	187, 407, 410
PpsI	GAGTC	3 cut(s)	187, 407, 410
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	333
PteI	GCGCGC	1 cut(s)	184
RseI	CAYNNNNRTG	1 cut(s)	528
SaqAI	TTAA	2 cut(s)	282, 556
SatI	GCNGC	2 cut(s)	244, 360
Sau3AI	GATC	3 cut(s)	24, 104, 333
SchI	GAGTC	3 cut(s)	187, 408, 410
SetI	ASST	3 cut(s)	345, 393, 427
SfaNI	GCATC	1 cut(s)	487
SmiMI	CAYNNNNRTG	1 cut(s)	528
SmlI	CTYRAG	1 cut(s)	281
SmoI	CTYRAG	1 cut(s)	281
Sse9I	AATT	4 cut(s)	147, 158, 168, 552
SsiI	CCGC	3 cut(s)	123, 243, 431
SspI	AATATT	1 cut(s)	292
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	1 cut(s)	22
TaqII	GACCGA	1 cut(s)	253
TasI	AATT	4 cut(s)	147, 158, 168, 552
TauI	GCSGC	1 cut(s)	246
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	2 cut(s)	282, 556
Tru9I	TTAA	2 cut(s)	282, 556
TscAI	CASTG	3 cut(s)	25, 82, 234
TseI	GCWGC	1 cut(s)	359
TspDTI	ATGAA	2 cut(s)	329, 512
TspRI	CASTG	3 cut(s)	25, 82, 234
Vha464I	CTTAAG	1 cut(s)	281
XapI	RAATTY	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.