Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0015311

Physical Location & Seq

Genomic Coordinates Forward (+)

27630691 .. 27632335

Gene Structure 1645 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1183800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGCCTCGTCGTCGTTTCGCCCTCGCCGCCGTTTTCGTCCTCGCAATCCTTCCTCATATTCAGGGTTTGGCGAACGATGAGCAGCACGATCAGATCTCCATACGATCATCGCCGTTCGAAACAGCCCTCGAAACCCTTCAGGTGCAAATTGGGTATAAGTACAAAAAAATTGGTCTCCTGCGCCGTGCCATGACCCATGCCTCCTTCTCCGAAGAGAACAACAAGGCACTGAGCATTTTGGGTGCCAATGTCATAGAAACATCGGTCTCTATGAGATCACTTGAAAGCAACCTTGAGATATCTGCAAAAGAGTTGAACCGCCGCATTTCTGATGTCTCGAAAGTAGAATCTTCCTGTGCTGCTGACGGGAAGCGATTGGGGTTGCATAAGGTGGTTAGAGTCTCTCCCAAGACGGATTCTTCAGCTCCCTTGGTGGTTTGTGGGGCTTTCAGAGCGGTCTTTGGTGCAATTGCTCTTGATACTGAGAAGGCTGATGATGCTGGAGAATATTTCTGGCGTGTTCATGGTGGCCAAGTTGGAGGAGCTCTTGCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0030154 GO:0032296 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonucleas_3_3

Protein Analysis

186

Amino Acids

20.11

Weight (kDa)

8.95

Isoelectric Point (pI)

57.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	59 - 161	2.1e-11	Ribonuclease-III-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24450
fragaria_vesca	FvH4_5g05090
malus_domestica	MD14G1183800.v1.1
prunus_persica	Prupe.5G176500_v2.0.a1
pyrus_communis	pycom14g15290
rosa_chinensis	RchiOBHm_Chr7g0193911
rosa_laevigata	RLG00000004234 RLG00000028758
rosa_multiflora	Rmu_sc0002389.1_g000010
rosa_roxburghii	Rroxscaffold_3G00261710
rosa_rugosa	Rorug07G0012800
rosa_samantha	Rh7AG139600 Rh7BG140100 Rh7CG143800 Rh7DG141000
rosa_wichuraiana	Rw7G011910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AccBSI	CCGCTC	1 cut(s)	455
AciI	CCGC	4 cut(s)	27, 319, 322, 455
AcoI	YGGCCR	1 cut(s)	529
AcuI	CTGAAG	2 cut(s)	122, 405
AfaI	GTAC	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	284, 316
AluBI	AGCT	2 cut(s)	425, 545
AluI	AGCT	2 cut(s)	425, 545
Alw21I	GWGCWC	1 cut(s)	547
Alw26I	GTCTC	4 cut(s)	179, 271, 340, 406
AoxI	GGCC	1 cut(s)	529
ApeKI	GCWGC	2 cut(s)	82, 359
Asp700I	GAANNNNTTC	1 cut(s)	135
AspLEI	GCGC	1 cut(s)	183
AsuII	TTCGAA	1 cut(s)	117
BalI	TGGCCA	1 cut(s)	531
BanI	GGYRCC	1 cut(s)	242
BanII	GRGCYC	1 cut(s)	547
Bbv12I	GWGCWC	1 cut(s)	547
BbvI	GCAGC	2 cut(s)	94, 346
BceAI	ACGGC	3 cut(s)	14, 97, 168
BcoDI	GTCTC	4 cut(s)	179, 271, 340, 406
BglII	AGATCT	1 cut(s)	93
BisI	GCNGC	4 cut(s)	27, 83, 322, 360
BlsI	GCNGC	4 cut(s)	28, 84, 323, 361
BmiI	GGNNCC	1 cut(s)	244
BmsI	GCATC	1 cut(s)	487
BpmI	CTGGAG	1 cut(s)	522
Bpu14I	TTCGAA	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	314
BsaI	GGTCTC	2 cut(s)	179, 271
BsaJI	CCNNGG	1 cut(s)	429
Bse3DI	GCAATG	1 cut(s)	558
BseDI	CCNNGG	1 cut(s)	429
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	2 cut(s)	221, 474
BseRI	GAGGAG	1 cut(s)	555
BseXI	GCAGC	2 cut(s)	94, 346
BshFI	GGCC	1 cut(s)	531
BshNI	GGYRCC	1 cut(s)	242
BsiHKAI	GWGCWC	1 cut(s)	547
BsmAI	GTCTC	4 cut(s)	179, 271, 340, 406
BsnI	GGCC	1 cut(s)	531
Bso31I	GGTCTC	2 cut(s)	179, 271
Bsp119I	TTCGAA	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp143I	GATC	4 cut(s)	88, 93, 104, 275
BspACI	CCGC	4 cut(s)	27, 319, 322, 455
BspANI	GGCC	1 cut(s)	531
BspCNI	CTCAG	2 cut(s)	222, 475
BspLI	GGNNCC	1 cut(s)	244
BspT104I	TTCGAA	1 cut(s)	117
BspT107I	GGYRCC	1 cut(s)	242
BspTNI	GGTCTC	2 cut(s)	179, 271
BsrBI	CCGCTC	1 cut(s)	455
BsrDI	GCAATG	1 cut(s)	558
BssECI	CCNNGG	1 cut(s)	429
BssMI	GATC	4 cut(s)	88, 93, 104, 275
BssT1I	CCWWGG	1 cut(s)	429
Bst6I	CTCTTC	1 cut(s)	207
BstBI	TTCGAA	1 cut(s)	117
BstDEI	CTNAG	2 cut(s)	230, 483
BstHHI	GCGC	1 cut(s)	183
BstKTI	GATC	4 cut(s)	91, 96, 107, 278
BstMAI	GTCTC	4 cut(s)	179, 271, 340, 406
BstMBI	GATC	4 cut(s)	88, 93, 104, 275
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 452, 497
BstV1I	GCAGC	2 cut(s)	94, 346
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuRI	GGCC	1 cut(s)	531
BtgZI	GCGATG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	227
CfoI	GCGC	1 cut(s)	183
Csp6I	GTAC	1 cut(s)	160
CviAII	CATG	3 cut(s)	190, 197, 524
CviJI	RGCY	6 cut(s)	125, 425, 446, 491, 531, 545
CviKI_1	RGCY	6 cut(s)	125, 425, 446, 491, 531, 545
CviQI	GTAC	1 cut(s)	160
DdeI	CTNAG	2 cut(s)	230, 483
DpnI	GATC	4 cut(s)	90, 95, 106, 277
DpnII	GATC	4 cut(s)	88, 93, 104, 275
EaeI	YGGCCR	1 cut(s)	529
Eam1104I	CTCTTC	1 cut(s)	207
EarI	CTCTTC	1 cut(s)	207
Ecl136II	GAGCTC	1 cut(s)	545
Eco130I	CCWWGG	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	547
Eco31I	GGTCTC	2 cut(s)	179, 271
Eco32I	GATATC	1 cut(s)	300
Eco53kI	GAGCTC	1 cut(s)	545
Eco57I	CTGAAG	2 cut(s)	122, 405
EcoICRI	GAGCTC	1 cut(s)	545
EcoRV	GATATC	1 cut(s)	300
EcoT14I	CCWWGG	1 cut(s)	429
EcoT38I	GRGCYC	1 cut(s)	547
ErhI	CCWWGG	1 cut(s)	429
FaeI	CATG	3 cut(s)	193, 200, 527
FaiI	YATR	9 cut(s)	57, 101, 156, 191, 198, 254, 272, 387, 525
FatI	CATG	3 cut(s)	189, 196, 523
Fnu4HI	GCNGC	4 cut(s)	27, 83, 322, 360
FriOI	GRGCYC	1 cut(s)	547
Fsp4HI	GCNGC	4 cut(s)	27, 83, 322, 360
GlaI	GCGC	1 cut(s)	182
GluI	GCNGC	4 cut(s)	27, 83, 322, 360
GsuI	CTGGAG	1 cut(s)	522
HaeIII	GGCC	1 cut(s)	531
HhaI	GCGC	1 cut(s)	183
Hin1II	CATG	3 cut(s)	193, 200, 527
Hin6I	GCGC	1 cut(s)	181
HinP1I	GCGC	1 cut(s)	181
HinfI	GANTC	3 cut(s)	347, 399, 416
Hpy188I	TCNGA	4 cut(s)	93, 211, 331, 452
Hpy188III	TCNNGA	2 cut(s)	337, 476
Hpy99I	CGWCG	2 cut(s)	12, 15
HpyAV	CCTTC	4 cut(s)	59, 146, 214, 481
HpyCH4V	TGCA	5 cut(s)	145, 305, 385, 467, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 452, 497
HpyF3I	CTNAG	2 cut(s)	230, 483
Hsp92II	CATG	3 cut(s)	193, 200, 527
HspAI	GCGC	1 cut(s)	181
Kzo9I	GATC	4 cut(s)	88, 93, 104, 275
LmnI	GCTCC	2 cut(s)	430, 542
LpnPI	CCDG	6 cut(s)	47, 125, 191, 367, 486, 499
Lsp1109I	GCAGC	2 cut(s)	94, 346
LweI	GCATC	1 cut(s)	487
MalI	GATC	4 cut(s)	90, 95, 106, 277
MbiI	CCGCTC	1 cut(s)	455
MboI	GATC	4 cut(s)	88, 93, 104, 275
MboII	GAAGA	3 cut(s)	224, 342, 411
MfeI	CAATTG	1 cut(s)	468
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	1 cut(s)	547
MlsI	TGGCCA	1 cut(s)	531
MluCI	AATT	3 cut(s)	147, 168, 468
MluNI	TGGCCA	1 cut(s)	531
MlyI	GAGTC	1 cut(s)	408
MmeI	TCCRAC	1 cut(s)	517
MnlI	CCTC	7 cut(s)	15, 32, 50, 63, 137, 211, 533
Mox20I	TGGCCA	1 cut(s)	531
MroXI	GAANNNNTTC	1 cut(s)	135
MscI	TGGCCA	1 cut(s)	531
Msp20I	TGGCCA	1 cut(s)	531
MunI	CAATTG	1 cut(s)	468
MwoI	GCNNNNNNNGC	3 cut(s)	26, 452, 497
NdeII	GATC	4 cut(s)	88, 93, 104, 275
NlaIII	CATG	3 cut(s)	193, 200, 527
NlaIV	GGNNCC	1 cut(s)	244
NspV	TTCGAA	1 cut(s)	117
PdmI	GAANNNNTTC	1 cut(s)	135
PfeI	GAWTC	2 cut(s)	347, 416
PkrI	GCNGC	4 cut(s)	28, 84, 323, 361
PleI	GAGTC	1 cut(s)	407
PpsI	GAGTC	1 cut(s)	407
Psp124BI	GAGCTC	1 cut(s)	547
PspN4I	GGNNCC	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	93
RsaI	GTAC	1 cut(s)	161
RsaNI	GTAC	1 cut(s)	160
SacI	GAGCTC	1 cut(s)	547
SatI	GCNGC	4 cut(s)	27, 83, 322, 360
Sau3AI	GATC	4 cut(s)	88, 93, 104, 275
SchI	GAGTC	1 cut(s)	408
SduI	GDGCHC	1 cut(s)	547
SetI	ASST	5 cut(s)	144, 294, 393, 427, 547
SfaNI	GCATC	1 cut(s)	487
SfuI	TTCGAA	1 cut(s)	117
SmlI	CTYRAG	1 cut(s)	293
SmoI	CTYRAG	1 cut(s)	293
Sse9I	AATT	3 cut(s)	147, 168, 468
SsiI	CCGC	4 cut(s)	27, 319, 322, 455
SspI	AATATT	1 cut(s)	509
SstI	GAGCTC	1 cut(s)	547
StyI	CCWWGG	1 cut(s)	429
TaqI	TCGA	3 cut(s)	117, 129, 338
TaqII	GACCGA	1 cut(s)	253
TasI	AATT	3 cut(s)	147, 168, 468
TatI	WGTACW	1 cut(s)	159
TauI	GCSGC	2 cut(s)	29, 324
TfiI	GAWTC	2 cut(s)	347, 416
TscAI	CASTG	1 cut(s)	234
TseI	GCWGC	2 cut(s)	82, 359
TspDTI	ATGAA	1 cut(s)	512
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	234
XmnI	GAANNNNTTC	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.