Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0015311

Physical Location & Seq

Genomic Coordinates Forward (+)

12111121 .. 12113011

Gene Structure 1891 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG141000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTGTACTAATGTGATAGTGCGACTGTTTGTAACATTGGATAAATGTACTCTCATGGTGCTAATTTTGATTTTGCTCAGCTATAATTTCCAAAAAATTAGTCTCCTTCGGCGTGCAATGACTCATGCCTCATTCTCTGAAGAGAACAACAAGGCACTGAGCATTTTGGGCGGCAATATCATAGACACTTCTGCCTCTCTACGACTACTTAAAAAAAATATTGAGATTTCTTCCAAAGAAATGAACCGTCGCATATCAGAGATCTCCAAGGTTGAATCTTCCTGTGCTGCTGATGGGTTGCGATTGGGGTTGCATAAGGTGGTTAGAGTCTCTCCCAAGACTAACTCTTCAGCTCCAGCGGTGGTTTGTGGGGCTTTCAGAGCAATCTTTGGTGCTATTGCTTTAGATGTTGGGAAGTCTGATGATGCTGGAAGCATTTTCTGGGCTGTTCATGGTGGTGAAGTTGGAGGAGTTATGGCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0030154 GO:0032296 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonucleas_3_3

Protein Analysis

161

Amino Acids

17.29

Weight (kDa)

9.39

Isoelectric Point (pI)

47.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	34 - 140	1.6e-11	Ribonuclease-III-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24450
fragaria_vesca	FvH4_5g05090
malus_domestica	MD14G1183800.v1.1
prunus_persica	Prupe.5G176500_v2.0.a1
pyrus_communis	pycom14g15290
rosa_chinensis	RchiOBHm_Chr7g0193911
rosa_laevigata	RLG00000004234 RLG00000028758
rosa_multiflora	Rmu_sc0002389.1_g000010
rosa_roxburghii	Rroxscaffold_3G00261710
rosa_rugosa	Rorug07G0012800
rosa_samantha	Rh7AG139600 Rh7BG140100 Rh7CG143800 Rh7DG141000
rosa_wichuraiana	Rw7G011910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	171, 359
AcuI	CTGAAG	2 cut(s)	159, 333
AfaI	GTAC	2 cut(s)	7, 49
AgsI	TTSAA	1 cut(s)	275
AluBI	AGCT	2 cut(s)	81, 353
AluI	AGCT	2 cut(s)	81, 353
Alw26I	GTCTC	2 cut(s)	107, 334
ApeKI	GCWGC	1 cut(s)	287
ArsI	GACNNNNNNTTYG	2 cut(s)	85, 117
AsuHPI	GGTGA	1 cut(s)	470
BbvI	GCAGC	1 cut(s)	274
BccI	CCATC	1 cut(s)	287
BcoDI	GTCTC	2 cut(s)	107, 334
BglII	AGATCT	1 cut(s)	261
BisI	GCNGC	2 cut(s)	172, 288
BlpI	GCTNAGC	1 cut(s)	77
BlsI	GCNGC	2 cut(s)	173, 289
BmsI	GCATC	1 cut(s)	415
BpmI	CTGGAG	1 cut(s)	339
Bpu1102I	GCTNAGC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	267
Bse3DI	GCAATG	1 cut(s)	123
BseDI	CCNNGG	1 cut(s)	267
BseMI	GCAATG	1 cut(s)	123
BseMII	CTCAG	2 cut(s)	91, 149
BseRI	GAGGAG	1 cut(s)	483
BseXI	GCAGC	1 cut(s)	274
BsmAI	GTCTC	2 cut(s)	107, 334
Bsp143I	GATC	1 cut(s)	261
Bsp1720I	GCTNAGC	1 cut(s)	77
BspACI	CCGC	2 cut(s)	171, 359
BspCNI	CTCAG	2 cut(s)	90, 150
BsrDI	GCAATG	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	1 cut(s)	261
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	27, 248
Bst6I	CTCTTC	2 cut(s)	135, 352
BstC8I	GCNNGC	1 cut(s)	114
BstDEI	CTNAG	2 cut(s)	77, 158
BstKTI	GATC	1 cut(s)	264
BstMAI	GTCTC	2 cut(s)	107, 334
BstMBI	GATC	1 cut(s)	261
BstMWI	GCNNNNNNNGC	2 cut(s)	168, 380
BstV1I	GCAGC	1 cut(s)	274
BstX2I	RGATCY	1 cut(s)	261
BstYI	RGATCY	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	155
Cac8I	GCNNGC	1 cut(s)	114
Csp6I	GTAC	2 cut(s)	6, 48
CviAII	CATG	3 cut(s)	55, 125, 452
CviJI	RGCY	4 cut(s)	81, 353, 374, 446
CviKI_1	RGCY	4 cut(s)	81, 353, 374, 446
CviQI	GTAC	2 cut(s)	6, 48
DdeI	CTNAG	2 cut(s)	77, 158
DpnI	GATC	1 cut(s)	263
DpnII	GATC	1 cut(s)	261
Eam1104I	CTCTTC	2 cut(s)	135, 352
EarI	CTCTTC	2 cut(s)	135, 352
Eco130I	CCWWGG	1 cut(s)	267
Eco57I	CTGAAG	2 cut(s)	159, 333
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	3 cut(s)	58, 128, 455
FaiI	YATR	8 cut(s)	56, 84, 126, 182, 254, 315, 453, 476
FatI	CATG	3 cut(s)	54, 124, 451
Fnu4HI	GCNGC	2 cut(s)	172, 288
Fsp4HI	GCNGC	2 cut(s)	172, 288
GluI	GCNGC	2 cut(s)	172, 288
GsuI	CTGGAG	1 cut(s)	339
Hin1II	CATG	3 cut(s)	58, 128, 455
HinfI	GANTC	3 cut(s)	121, 275, 327
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	4 cut(s)	139, 259, 380, 421
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	1 cut(s)	252
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	2 cut(s)	27, 248
HpyCH4V	TGCA	2 cut(s)	116, 313
HpyF10VI	GCNNNNNNNGC	2 cut(s)	168, 380
HpyF3I	CTNAG	2 cut(s)	77, 158
Hsp92II	CATG	3 cut(s)	58, 128, 455
Kzo9I	GATC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	358
LpnPI	CCDG	4 cut(s)	295, 369, 414, 427
Lsp1109I	GCAGC	1 cut(s)	274
LweI	GCATC	1 cut(s)	415
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	1 cut(s)	263
MboI	GATC	1 cut(s)	261
MboII	GAAGA	4 cut(s)	152, 222, 270, 339
MflI	RGATCY	1 cut(s)	261
MluCI	AATT	4 cut(s)	63, 85, 96, 480
MlyI	GAGTC	2 cut(s)	115, 336
MmeI	TCCRAC	1 cut(s)	445
MnlI	CCTC	3 cut(s)	139, 205, 461
MseI	TTAA	2 cut(s)	210, 484
MslI	CAYNNNNRTG	1 cut(s)	456
MspA1I	CMGCKG	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	168, 380
NdeII	GATC	1 cut(s)	261
NlaIII	CATG	3 cut(s)	58, 128, 455
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	2 cut(s)	173, 289
PleI	GAGTC	2 cut(s)	115, 335
PpsI	GAGTC	2 cut(s)	115, 335
PsuI	RGATCY	1 cut(s)	261
RsaI	GTAC	2 cut(s)	7, 49
RsaNI	GTAC	2 cut(s)	6, 48
RseI	CAYNNNNRTG	1 cut(s)	456
SaqAI	TTAA	2 cut(s)	210, 484
SatI	GCNGC	2 cut(s)	172, 288
Sau3AI	GATC	1 cut(s)	261
SchI	GAGTC	2 cut(s)	115, 336
SetI	ASST	4 cut(s)	83, 273, 321, 355
SfaNI	GCATC	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	456
Sse9I	AATT	4 cut(s)	63, 85, 96, 480
SsiI	CCGC	2 cut(s)	171, 359
SspI	AATATT	1 cut(s)	220
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	2 cut(s)	27, 248
TasI	AATT	4 cut(s)	63, 85, 96, 480
TatI	WGTACW	2 cut(s)	5, 47
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	2 cut(s)	210, 484
Tru9I	TTAA	2 cut(s)	210, 484
TscAI	CASTG	1 cut(s)	162
TseI	GCWGC	1 cut(s)	287
TspDTI	ATGAA	2 cut(s)	257, 440
TspRI	CASTG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.