Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0015311

Physical Location & Seq

Genomic Coordinates Reverse (-)

2976830 .. 2978466

Gene Structure 1637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGTTCCTCGTACTCTCGCTGTGTTCACCGTCGTTGTCTTCGCGATCGTTTCATCTATTCAGGGTTATGTGATTAACGAACAAGATGGGCAAATCTCAATGCGATCATCGCCGTTTGAAACCGCACTCCTAACCCTTCAGAAGCAAATTGGCTATAATTTCCAAAACATTGGTCTGCTTCGGCGTGCAATGACCCACGCCTCATTCTCCGAAGAGAACAACAAGGCACTGAGCATTTTGGGTGCCAATATCATAGACACATCTGCCTCTTTACGACTACTTGGAAAGAACATTGAGATTTCTGCAAAAGAAATGAACCGTCACATATCAGAGATCTCCAAGGTTGAATCTTCCTGTGCTGCTGATGGGCTGCGATTGGGGTTGCATAAGGTTGTTAGAGTCTCTCCCAAGACTGACTCTTCATCTCCAGCGGTGGTTTGTGGGGCTTTCAGAGCAGTCTTTGGTGCTATCGCTTTAGATGTCGGCAAGTCTGATGATGCTGGAAGCATTTTTTGGGCTGTTCATGGTGGTGAAGCTGGAGGAGTCACTTCAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0030154 GO:0032296 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonucleas_3_3

Protein Analysis

186

Amino Acids

19.64

Weight (kDa)

7.82

Isoelectric Point (pI)

56.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	58 - 164	1.1e-10	Ribonuclease-III-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0015311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24450
fragaria_vesca	FvH4_5g05090
malus_domestica	MD14G1183800.v1.1
prunus_persica	Prupe.5G176500_v2.0.a1
pyrus_communis	pycom14g15290
rosa_chinensis	RchiOBHm_Chr7g0193911
rosa_laevigata	RLG00000004234 RLG00000028758
rosa_multiflora	Rmu_sc0002389.1_g000010
rosa_roxburghii	Rroxscaffold_3G00261710
rosa_rugosa	Rorug07G0012800
rosa_samantha	Rh7AG139600 Rh7BG140100 Rh7CG143800 Rh7DG141000
rosa_wichuraiana	Rw7G011910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	242
AccII	CGCG	1 cut(s)	44
AciI	CCGC	2 cut(s)	123, 431
AcuI	CTGAAG	1 cut(s)	122
AfaI	GTAC	1 cut(s)	13
AgsI	TTSAA	3 cut(s)	119, 347, 552
AjuI	GAANNNNNNNTTGG	2 cut(s)	496, 528
AluBI	AGCT	1 cut(s)	536
AluI	AGCT	1 cut(s)	536
Alw26I	GTCTC	1 cut(s)	406
ApeKI	GCWGC	2 cut(s)	359, 370
ArsI	GACNNNNNNTTYG	2 cut(s)	157, 189
AsuHPI	GGTGA	2 cut(s)	19, 542
BanI	GGYRCC	1 cut(s)	242
BbsI	GAAGAC	1 cut(s)	31
BbvI	GCAGC	2 cut(s)	346, 357
BccI	CCATC	2 cut(s)	80, 359
BceAI	ACGGC	1 cut(s)	97
BcoDI	GTCTC	1 cut(s)	406
BglII	AGATCT	1 cut(s)	333
BisI	GCNGC	2 cut(s)	360, 371
BlsI	GCNGC	2 cut(s)	361, 372
BmiI	GGNNCC	2 cut(s)	6, 244
BmsI	GCATC	1 cut(s)	487
BpiI	GAAGAC	1 cut(s)	31
BpmI	CTGGAG	2 cut(s)	411, 558
BsaJI	CCNNGG	1 cut(s)	339
Bse3DI	GCAATG	1 cut(s)	195
BseDI	CCNNGG	1 cut(s)	339
BseMI	GCAATG	1 cut(s)	195
BseMII	CTCAG	1 cut(s)	221
BseRI	GAGGAG	1 cut(s)	555
BseXI	GCAGC	2 cut(s)	346, 357
Bsh1236I	CGCG	1 cut(s)	44
Bsh1285I	CGRYCG	1 cut(s)	48
BshNI	GGYRCC	1 cut(s)	242
BsiEI	CGRYCG	1 cut(s)	48
BsmAI	GTCTC	1 cut(s)	406
Bsp143I	GATC	3 cut(s)	45, 104, 333
Bsp68I	TCGCGA	1 cut(s)	44
BspACI	CCGC	2 cut(s)	123, 431
BspCNI	CTCAG	1 cut(s)	222
BspFNI	CGCG	1 cut(s)	44
BspLI	GGNNCC	2 cut(s)	6, 244
BspT107I	GGYRCC	1 cut(s)	242
BsrDI	GCAATG	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	339
BssMI	GATC	3 cut(s)	45, 104, 333
BssT1I	CCWWGG	1 cut(s)	339
Bst4CI	ACNGT	2 cut(s)	31, 320
Bst6I	CTCTTC	2 cut(s)	207, 424
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	1 cut(s)	230
BstFNI	CGCG	1 cut(s)	44
BstKTI	GATC	3 cut(s)	48, 107, 336
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	3 cut(s)	45, 104, 333
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	2 cut(s)	109, 452
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	2 cut(s)	346, 357
BstV2I	GAAGAC	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	333
BstXI	CCANNNNNNTGG	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	333
BtgZI	GCGATG	1 cut(s)	93
BtsIMutI	CAGTG	1 cut(s)	227
BtuMI	TCGCGA	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	186
Csp6I	GTAC	1 cut(s)	12
CviAII	CATG	1 cut(s)	524
CviJI	RGCY	5 cut(s)	153, 370, 446, 518, 536
CviKI_1	RGCY	5 cut(s)	153, 370, 446, 518, 536
CviQI	GTAC	1 cut(s)	12
DdeI	CTNAG	1 cut(s)	230
DpnI	GATC	3 cut(s)	47, 106, 335
DpnII	GATC	3 cut(s)	45, 104, 333
Eam1104I	CTCTTC	2 cut(s)	207, 424
EarI	CTCTTC	2 cut(s)	207, 424
Eco130I	CCWWGG	1 cut(s)	339
Eco57I	CTGAAG	1 cut(s)	122
EcoT14I	CCWWGG	1 cut(s)	339
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	1 cut(s)	527
FaiI	YATR	6 cut(s)	69, 156, 254, 326, 387, 525
FatI	CATG	1 cut(s)	523
Fnu4HI	GCNGC	2 cut(s)	360, 371
Fsp4HI	GCNGC	2 cut(s)	360, 371
GluI	GCNGC	2 cut(s)	360, 371
GsuI	CTGGAG	2 cut(s)	411, 558
Hin1II	CATG	1 cut(s)	527
HinfI	GANTC	4 cut(s)	347, 399, 416, 543
HphI	GGTGA	2 cut(s)	19, 542
Hpy166II	GTNNAC	1 cut(s)	27
Hpy188I	TCNGA	5 cut(s)	141, 211, 331, 452, 493
Hpy188III	TCNNGA	1 cut(s)	43
Hpy8I	GTNNAC	1 cut(s)	27
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	2 cut(s)	31, 320
HpyCH4V	TGCA	3 cut(s)	188, 305, 385
HpyF10VI	GCNNNNNNNGC	2 cut(s)	109, 452
HpyF3I	CTNAG	1 cut(s)	230
Hsp92II	CATG	1 cut(s)	527
Kzo9I	GATC	3 cut(s)	45, 104, 333
LpnPI	CCDG	5 cut(s)	47, 367, 441, 486, 522
Lsp1109I	GCAGC	2 cut(s)	346, 357
LweI	GCATC	1 cut(s)	487
MaeIII	GTNAC	2 cut(s)	320, 544
MalI	GATC	3 cut(s)	47, 106, 335
MboI	GATC	3 cut(s)	45, 104, 333
MboII	GAAGA	4 cut(s)	31, 224, 342, 411
MflI	RGATCY	1 cut(s)	333
MluCI	AATT	3 cut(s)	147, 157, 552
MlyI	GAGTC	3 cut(s)	408, 410, 552
MnlI	CCTC	4 cut(s)	18, 211, 277, 533
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	1 cut(s)	528
MspA1I	CMGCKG	1 cut(s)	431
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	2 cut(s)	109, 452
NdeII	GATC	3 cut(s)	45, 104, 333
NlaIII	CATG	1 cut(s)	527
NlaIV	GGNNCC	2 cut(s)	6, 244
NmuCI	GTSAC	2 cut(s)	320, 544
NruI	TCGCGA	1 cut(s)	44
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	2 cut(s)	361, 372
Ple19I	CGATCG	1 cut(s)	48
PleI	GAGTC	3 cut(s)	407, 410, 551
PpsI	GAGTC	3 cut(s)	407, 410, 551
PspN4I	GGNNCC	2 cut(s)	6, 244
PsuI	RGATCY	1 cut(s)	333
PvuI	CGATCG	1 cut(s)	48
RruI	TCGCGA	1 cut(s)	44
RsaI	GTAC	1 cut(s)	13
RsaNI	GTAC	1 cut(s)	12
RseI	CAYNNNNRTG	1 cut(s)	528
SaqAI	TTAA	1 cut(s)	75
SatI	GCNGC	2 cut(s)	360, 371
Sau3AI	GATC	3 cut(s)	45, 104, 333
SchI	GAGTC	3 cut(s)	408, 410, 552
SetI	ASST	3 cut(s)	345, 393, 538
SfaNI	GCATC	1 cut(s)	487
SmiMI	CAYNNNNRTG	1 cut(s)	528
Sse9I	AATT	3 cut(s)	147, 157, 552
SsiI	CCGC	2 cut(s)	123, 431
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	2 cut(s)	31, 320
TasI	AATT	3 cut(s)	147, 157, 552
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75
TscAI	CASTG	1 cut(s)	234
TseFI	GTSAC	2 cut(s)	320, 544
TseI	GCWGC	2 cut(s)	359, 370
Tsp45I	GTSAC	2 cut(s)	320, 544
TspDTI	ATGAA	4 cut(s)	42, 329, 411, 512
TspRI	CASTG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.