Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0015311

Physical Location & Seq

Genomic Coordinates Forward (+)

11725332 .. 11726699

Gene Structure 1368 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG143800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGAGACTCGTGCTTTAAGTCAAAGAGTCAATTGGCATTTTCCTGGGGTTTCAATTCACAGAAGCCTAGTTCTCACATCAAGGAAGGAAGAAAAAAAAAACCAAGAACAGTAAAAATGGTTCCTCGTGGTTTCACTGTGATCACCATCTTCGTCTTCGCAATCGTTCCTCATATTCAGGGTTTCGCAATCAATGAACAAGATGGGAAAATCTCCATGCGATCATCGCCGTTTGAAACCGCCCTCGTAACCCTTCAGGGGCAAATTGGCTATAATTTCCAAAAAATTAGTCTCCTTCGGCGTGCAATGACTCATGCCTCATTCTCTGAAGAGAACAACAAGGCACTGAGCATTTTGGGCGGCAATATCATAGACACTTCGGCCTCTCTACGACTACTTAAAAAAAATATTGAGATTTCTTCCAAAGAAATGAACCGTCGCATATCAGAGATCTCCAAGGTTGAATCTTCCTGTGCTGCTGATGGATTGCGATTGGGGTTGCATAAGGTGGTTAGAGTCTCTCCCAAGACTAACTCTTCAGCTCCAGCGGTGGTTTGTGGGGCTTTCAGAGCAATCTTTGGTGCTATTGCTTTAGATGTTGGGAAGTCTGATGATGCTGGAAACATTTTCTGGGTTGTTCATGGTGGTGAAGTTGGAGGAGTTATGGCAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000741 GO:0003674 GO:0003676 GO:0003723 GO:0003725 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0006997 GO:0007275 GO:0008150 GO:0008152 GO:0009553 GO:0009559 GO:0009561 GO:0009987 GO:0010197 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0030154 GO:0032296 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048229 GO:0048284 GO:0048856 GO:0048869 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ribonucleas_3_3

Protein Analysis

234

Amino Acids

25.64

Weight (kDa)

10.32

Isoelectric Point (pI)

51.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribonucleas_3_3	PF14622	107 - 213	4.7e-11	Ribonuclease-III-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015311)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G24450
fragaria_vesca	FvH4_5g05090
malus_domestica	MD14G1183800.v1.1
prunus_persica	Prupe.5G176500_v2.0.a1
pyrus_communis	pycom14g15290
rosa_chinensis	RchiOBHm_Chr7g0193911
rosa_laevigata	RLG00000004234 RLG00000028758
rosa_multiflora	Rmu_sc0002389.1_g000010
rosa_roxburghii	Rroxscaffold_3G00261710
rosa_rugosa	Rorug07G0012800
rosa_samantha	Rh7AG139600 Rh7BG140100 Rh7CG143800 Rh7DG141000
rosa_wichuraiana	Rw7G011910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	270, 390, 578
AcuI	CTGAAG	3 cut(s)	269, 378, 552
AfiI	CCNNNNNNNGG	1 cut(s)	288
AgsI	TTSAA	3 cut(s)	85, 266, 494
AjnI	CCWGG	1 cut(s)	74
AluBI	AGCT	1 cut(s)	572
AluI	AGCT	1 cut(s)	572
Alw26I	GTCTC	3 cut(s)	30, 326, 553
AoxI	GGCC	1 cut(s)	411
ApeKI	GCWGC	1 cut(s)	506
ArsI	GACNNNNNNTTYG	2 cut(s)	304, 336
AsuHPI	GGTGA	2 cut(s)	166, 689
BauI	CACGAG	2 cut(s)	40, 156
BbsI	GAAGAC	1 cut(s)	178
BbvI	GCAGC	1 cut(s)	493
BccI	CCATC	3 cut(s)	185, 227, 506
BceAI	ACGGC	1 cut(s)	244
BciT130I	CCWGG	1 cut(s)	76
BclI	TGATCA	1 cut(s)	171
BcoDI	GTCTC	3 cut(s)	30, 326, 553
BfaI	CTAG	1 cut(s)	99
BglII	AGATCT	1 cut(s)	480
BisI	GCNGC	2 cut(s)	391, 507
BlsI	GCNGC	2 cut(s)	392, 508
Bme1390I	CCNGG	1 cut(s)	76
BmiI	GGNNCC	1 cut(s)	153
BmrFI	CCNGG	1 cut(s)	76
BmsI	GCATC	1 cut(s)	634
BpiI	GAAGAC	1 cut(s)	178
BpmI	CTGGAG	1 cut(s)	558
BsaBI	GATNNNNATC	1 cut(s)	176
BsaJI	CCNNGG	2 cut(s)	75, 486
Bsc4I	CCNNNNNNNGG	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	342
Bse8I	GATNNNNATC	1 cut(s)	176
BseBI	CCWGG	1 cut(s)	76
BseDI	CCNNGG	2 cut(s)	75, 486
BseJI	GATNNNNATC	1 cut(s)	176
BseLI	CCNNNNNNNGG	1 cut(s)	288
BseMI	GCAATG	1 cut(s)	342
BseMII	CTCAG	1 cut(s)	368
BseRI	GAGGAG	1 cut(s)	702
BseXI	GCAGC	1 cut(s)	493
BshFI	GGCC	1 cut(s)	413
BslI	CCNNNNNNNGG	1 cut(s)	288
BsmAI	GTCTC	3 cut(s)	30, 326, 553
BsnI	GGCC	1 cut(s)	413
Bsp143I	GATC	3 cut(s)	171, 251, 480
BspACI	CCGC	3 cut(s)	270, 390, 578
BspANI	GGCC	1 cut(s)	413
BspCNI	CTCAG	1 cut(s)	369
BspLI	GGNNCC	1 cut(s)	153
BsrDI	GCAATG	1 cut(s)	342
BssECI	CCNNGG	2 cut(s)	75, 486
BssMI	GATC	3 cut(s)	171, 251, 480
BssSI	CACGAG	2 cut(s)	40, 156
BssT1I	CCWWGG	1 cut(s)	486
Bst2BI	CACGAG	2 cut(s)	40, 156
Bst2UI	CCWGG	1 cut(s)	76
Bst4CI	ACNGT	3 cut(s)	142, 169, 467
Bst6I	CTCTTC	2 cut(s)	354, 571
BstC8I	GCNNGC	1 cut(s)	333
BstDEI	CTNAG	1 cut(s)	377
BstKTI	GATC	3 cut(s)	174, 254, 483
BstMAI	GTCTC	3 cut(s)	30, 326, 553
BstMBI	GATC	3 cut(s)	171, 251, 480
BstMWI	GCNNNNNNNGC	3 cut(s)	256, 387, 599
BstNI	CCWGG	1 cut(s)	76
BstSCI	CCNGG	1 cut(s)	74
BstV1I	GCAGC	1 cut(s)	493
BstV2I	GAAGAC	1 cut(s)	178
BstX2I	RGATCY	1 cut(s)	480
BstYI	RGATCY	1 cut(s)	480
BsuRI	GGCC	1 cut(s)	413
BtgZI	GCGATG	1 cut(s)	240
BtsIMutI	CAGTG	2 cut(s)	165, 374
Cac8I	GCNNGC	1 cut(s)	333
CviAII	CATG	3 cut(s)	247, 344, 671
CviJI	RGCY	5 cut(s)	97, 300, 413, 572, 593
CviKI_1	RGCY	5 cut(s)	97, 300, 413, 572, 593
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	3 cut(s)	173, 253, 482
DpnII	GATC	3 cut(s)	171, 251, 480
Eam1104I	CTCTTC	2 cut(s)	354, 571
EarI	CTCTTC	2 cut(s)	354, 571
Eco130I	CCWWGG	1 cut(s)	486
Eco57I	CTGAAG	3 cut(s)	269, 378, 552
EcoRII	CCWGG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	486
ErhI	CCWWGG	1 cut(s)	486
FaeI	CATG	3 cut(s)	250, 347, 674
FaiI	YATR	9 cut(s)	204, 248, 303, 345, 401, 473, 534, 672, 695
FatI	CATG	3 cut(s)	246, 343, 670
FbaI	TGATCA	1 cut(s)	171
Fnu4HI	GCNGC	2 cut(s)	391, 507
Fsp4HI	GCNGC	2 cut(s)	391, 507
FspBI	CTAG	1 cut(s)	99
GluI	GCNGC	2 cut(s)	391, 507
GsuI	CTGGAG	1 cut(s)	558
HaeIII	GGCC	1 cut(s)	413
Hin1II	CATG	3 cut(s)	250, 347, 674
HinfI	GANTC	5 cut(s)	38, 58, 340, 494, 546
HphI	GGTGA	2 cut(s)	166, 689
Hpy188I	TCNGA	4 cut(s)	358, 478, 599, 640
Hpy99I	CGWCG	1 cut(s)	471
HpyAV	CCTTC	3 cut(s)	110, 293, 335
HpyCH4III	ACNGT	3 cut(s)	142, 169, 467
HpyCH4V	TGCA	2 cut(s)	335, 532
HpyF10VI	GCNNNNNNNGC	3 cut(s)	256, 387, 599
HpyF3I	CTNAG	1 cut(s)	377
Hsp92II	CATG	3 cut(s)	250, 347, 674
Ksp22I	TGATCA	1 cut(s)	171
Kzo9I	GATC	3 cut(s)	171, 251, 480
LmnI	GCTCC	1 cut(s)	577
LpnPI	CCDG	8 cut(s)	61, 88, 194, 272, 514, 588, 633, 646
Lsp1109I	GCAGC	1 cut(s)	493
LweI	GCATC	1 cut(s)	634
MaeI	CTAG	1 cut(s)	99
MaeIII	GTNAC	1 cut(s)	277
MalI	GATC	3 cut(s)	173, 253, 482
MboI	GATC	3 cut(s)	171, 251, 480
MboII	GAAGA	7 cut(s)	132, 172, 178, 371, 441, 489, 558
MfeI	CAATTG	1 cut(s)	62
MflI	RGATCY	1 cut(s)	480
MluCI	AATT	6 cut(s)	62, 85, 294, 304, 315, 699
MlyI	GAGTC	4 cut(s)	32, 67, 334, 555
MmeI	TCCRAC	1 cut(s)	664
MnlI	CCTC	6 cut(s)	165, 210, 284, 358, 424, 680
MseI	TTAA	4 cut(s)	5, 48, 429, 703
MslI	CAYNNNNRTG	1 cut(s)	675
MspA1I	CMGCKG	1 cut(s)	578
MspR9I	CCNGG	1 cut(s)	76
MunI	CAATTG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	76
MwoI	GCNNNNNNNGC	3 cut(s)	256, 387, 599
NdeII	GATC	3 cut(s)	171, 251, 480
NlaIII	CATG	3 cut(s)	250, 347, 674
NlaIV	GGNNCC	1 cut(s)	153
PfeI	GAWTC	1 cut(s)	494
PkrI	GCNGC	2 cut(s)	392, 508
PleI	GAGTC	4 cut(s)	32, 66, 334, 554
PpsI	GAGTC	4 cut(s)	32, 66, 334, 554
Psp6I	CCWGG	1 cut(s)	74
PspGI	CCWGG	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	153
PsrI	GAACNNNNNNTAC	2 cut(s)	135, 167
PsuI	RGATCY	1 cut(s)	480
RseI	CAYNNNNRTG	1 cut(s)	675
SaqAI	TTAA	4 cut(s)	5, 48, 429, 703
SatI	GCNGC	2 cut(s)	391, 507
Sau3AI	GATC	3 cut(s)	171, 251, 480
SchI	GAGTC	4 cut(s)	32, 67, 334, 555
ScrFI	CCNGG	1 cut(s)	76
SetI	ASST	3 cut(s)	492, 540, 574
SfaNI	GCATC	1 cut(s)	634
SmiMI	CAYNNNNRTG	1 cut(s)	675
Sse9I	AATT	6 cut(s)	62, 85, 294, 304, 315, 699
SsiI	CCGC	3 cut(s)	270, 390, 578
SspI	AATATT	1 cut(s)	439
SspMI	CTAG	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	74
StyI	CCWWGG	1 cut(s)	486
TaaI	ACNGT	3 cut(s)	142, 169, 467
TasI	AATT	6 cut(s)	62, 85, 294, 304, 315, 699
TauI	GCSGC	1 cut(s)	393
TfiI	GAWTC	1 cut(s)	494
Tru1I	TTAA	4 cut(s)	5, 48, 429, 703
Tru9I	TTAA	4 cut(s)	5, 48, 429, 703
TscAI	CASTG	2 cut(s)	172, 381
TseI	GCWGC	1 cut(s)	506
TspDTI	ATGAA	3 cut(s)	240, 476, 659
TspRI	CASTG	2 cut(s)	172, 381
XspI	CTAG	1 cut(s)	99

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.