AT1G25275

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0014186
Physical Location & Seq
Forward (+)
8860527 .. 8861522
996 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G25275.2

Sequence Viewer

Length: 225 bp
ATGATGAAGAAGCAAGTGACGATAGTGGCGGCTCTTCTGATTATGATGGCTTTATGTTCCAGCTTGAATATGGTGGCCGAGGCTCAATTAGGCCCCGGAGACTGCTACGACGGTTGCTCCACCGCCTGCGTCCAACGTGACCCGAGAAAGACGTCCCGATGCGATCGCAAGTGTTCCATTCGTTGTGGTCCAGATGCTGCCAGGGCAAGTGGGAGTGGTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

7.8

Weight (kDa)

8.8

Isoelectric Point (pI)

23.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25275 AT1G25275 AT1G25275
fragaria_vesca FvH4_5g30240 FvH4_5g30240 FvH4_5g30240
malus_domestica MD15G1417600.v1.1
prunus_persica Prupe.1G561600_v2.0.a1 Prupe.4G249100_v2.0.a1
pyrus_communis pycom15g37070
rosa_chinensis RchiOBHm_Chr7g0224551
rosa_roxburghii Rroxscaffold_3G00234640
rosa_rugosa Rorug07G0223800
rosa_samantha Rh7AG378800 Rh7BG360000 Rh7CG398500 Rh7DG369700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 155
AciI CCGC 2 cut(s) 29, 123
AcoI YGGCCR 1 cut(s) 75
AcyI GRCGYC 1 cut(s) 152
AgsI TTSAA 1 cut(s) 67
AjnI CCWGG 1 cut(s) 200
AluBI AGCT 1 cut(s) 63
AluI AGCT 1 cut(s) 63
Alw26I GTCTC 1 cut(s) 93
AlwNI CAGNNNCTG 1 cut(s) 197
Ama87I CYCGRG 1 cut(s) 142
AoxI GGCC 2 cut(s) 75, 91
ApeKI GCWGC 1 cut(s) 197
AsiSI GCGATCGC 1 cut(s) 166
AspS9I GGNCC 2 cut(s) 92, 188
AsuC2I CCSGG 1 cut(s) 96
AvaI CYCGRG 1 cut(s) 142
AvaII GGWCC 1 cut(s) 188
BbvI GCAGC 1 cut(s) 184
BccI CCATC 1 cut(s) 40
BciT130I CCWGG 1 cut(s) 202
BcnI CCSGG 1 cut(s) 96
BcoDI GTCTC 1 cut(s) 93
BisI GCNGC 2 cut(s) 30, 198
BlsI GCNGC 2 cut(s) 31, 199
Bme1390I CCNGG 2 cut(s) 96, 202
Bme18I GGWCC 1 cut(s) 188
BmeT110I CYCGRG 1 cut(s) 142
BmgT120I GGNCC 2 cut(s) 92, 188
BmiI GGNNCC 1 cut(s) 94
BmrFI CCNGG 2 cut(s) 96, 202
BmsI GCATC 2 cut(s) 149, 184
BpuMI CCSGG 1 cut(s) 96
BsaHI GRCGYC 1 cut(s) 152
BsaJI CCNNGG 3 cut(s) 78, 94, 201
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
BseBI CCWGG 1 cut(s) 202
BseDI CCNNGG 3 cut(s) 78, 94, 201
BseXI GCAGC 1 cut(s) 184
Bsh1285I CGRYCG 1 cut(s) 166
BshFI GGCC 2 cut(s) 77, 93
BsiEI CGRYCG 1 cut(s) 166
BsiHKCI CYCGRG 1 cut(s) 142
BsiSI CCGG 1 cut(s) 96
BslFI GGGAC 1 cut(s) 139
BsmAI GTCTC 1 cut(s) 93
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 2 cut(s) 77, 93
BsoBI CYCGRG 1 cut(s) 142
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 2 cut(s) 29, 123
BspANI GGCC 2 cut(s) 77, 93
BspLI GGNNCC 1 cut(s) 94
BspQI GCTCTTC 1 cut(s) 39
BssECI CCNNGG 3 cut(s) 78, 94, 201
BssMI GATC 1 cut(s) 163
BssNI GRCGYC 1 cut(s) 152
Bst2UI CCWGG 1 cut(s) 202
Bst4CI ACNGT 1 cut(s) 113
Bst6I CTCTTC 1 cut(s) 39
BstACI GRCGYC 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 127
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 1 cut(s) 163
BstMCI CGRYCG 1 cut(s) 166
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 202
BstSCI CCNGG 2 cut(s) 94, 200
BstV1I GCAGC 1 cut(s) 184
BsuRI GGCC 2 cut(s) 77, 93
Cac8I GCNNGC 1 cut(s) 127
CaiI CAGNNNCTG 1 cut(s) 197
Cfr13I GGNCC 2 cut(s) 92, 188
CseI GACGC 1 cut(s) 118
CviJI RGCY 6 cut(s) 32, 50, 63, 77, 83, 93
CviKI_1 RGCY 6 cut(s) 32, 50, 63, 77, 83, 93
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
EaeI YGGCCR 1 cut(s) 75
Eam1104I CTCTTC 1 cut(s) 39
EarI CTCTTC 1 cut(s) 39
Eco47I GGWCC 1 cut(s) 188
Eco88I CYCGRG 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 200
FaiI YATR 3 cut(s) 44, 55, 71
FaqI GGGAC 1 cut(s) 139
Fnu4HI GCNGC 2 cut(s) 30, 198
Fsp4HI GCNGC 2 cut(s) 30, 198
GluI GCNGC 2 cut(s) 30, 198
HaeIII GGCC 2 cut(s) 77, 93
HapII CCGG 1 cut(s) 96
HgaI GACGC 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 152
HpaII CCGG 1 cut(s) 96
Hpy188I TCNGA 1 cut(s) 39
Hpy188III TCNNGA 2 cut(s) 156, 191
Hpy99I CGWCG 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 113
HpyCH4IV ACGT 2 cut(s) 136, 152
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpySE526I ACGT 2 cut(s) 136, 152
Hsp92I GRCGYC 1 cut(s) 152
Kzo9I GATC 1 cut(s) 163
LguI GCTCTTC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 122
LpnPI CCDG 6 cut(s) 73, 109, 139, 187, 204, 214
Lsp1109I GCAGC 1 cut(s) 184
LweI GCATC 2 cut(s) 149, 184
MaeII ACGT 2 cut(s) 136, 152
MaeIII GTNAC 2 cut(s) 16, 137
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 2 cut(s) 19, 26
MluCI AATT 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 1 cut(s) 73
MseI TTAA 1 cut(s) 223
MspI CCGG 1 cut(s) 96
MspR9I CCNGG 2 cut(s) 96, 202
MvaI CCWGG 1 cut(s) 202
MwoI GCNNNNNNNGC 1 cut(s) 203
NciI CCSGG 1 cut(s) 96
NdeII GATC 1 cut(s) 163
NlaIV GGNNCC 1 cut(s) 94
NmeAIII GCCGAG 1 cut(s) 103
NmuCI GTSAC 2 cut(s) 16, 137
PciSI GCTCTTC 1 cut(s) 39
PkrI GCNGC 2 cut(s) 31, 199
Ple19I CGATCG 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 200
PspGI CCWGG 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 94
PspPI GGNCC 2 cut(s) 92, 188
PstNI CAGNNNCTG 1 cut(s) 197
PvuI CGATCG 1 cut(s) 166
RgaI GCGATCGC 1 cut(s) 166
SapI GCTCTTC 1 cut(s) 39
SaqAI TTAA 1 cut(s) 223
SatI GCNGC 2 cut(s) 30, 198
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 2 cut(s) 92, 188
ScrFI CCNGG 2 cut(s) 96, 202
SetI ASST 3 cut(s) 65, 139, 155
SfaAI GCGATCGC 1 cut(s) 166
SfaNI GCATC 2 cut(s) 149, 184
SgfI GCGATCGC 1 cut(s) 166
SinI GGWCC 1 cut(s) 188
Sse9I AATT 1 cut(s) 86
SsiI CCGC 2 cut(s) 29, 123
StyD4I CCNGG 2 cut(s) 94, 200
TaaI ACNGT 1 cut(s) 113
TaiI ACGT 2 cut(s) 139, 155
TasI AATT 1 cut(s) 86
TauI GCSGC 1 cut(s) 32
Tru1I TTAA 1 cut(s) 223
Tru9I TTAA 1 cut(s) 223
TseFI GTSAC 2 cut(s) 16, 137
TseI GCWGC 1 cut(s) 197
Tsp45I GTSAC 2 cut(s) 16, 137
TspDTI ATGAA 1 cut(s) 20
VpaK11BI GGWCC 1 cut(s) 188
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
ZraI GACGTC 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.