MD15G1417600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0014186
Physical Location & Seq
Forward (+)
51939633 .. 51942141
2509 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1417600.v1.1.491

Sequence Viewer

Length: 393 bp
ATGGGCGACCGCCGCAGTGAAGAAGAATATGGGTCCAACGGCTTTTTCGTAGTTCCATTGCCATTCATGGGCAGTTTGAAACCGTTAGTGTCTTCTATTAAATTTGGAAACCAACCAAACGAACAGAAGAAGTCCAGAACTAGATCACCGTTCAGTCGCAGCAAGCAAAGAAGGAGGAAGATGATGAAGATGAAGAACGTCGTCGTAGTGTTGGTTTTGTGCGTCATCTTCTCTGGTATGGAGAACGCCGTCGTAGACTCTGCTGCAGTTGACTGCTATGATGCTTGCAGCACTGGCTGTGTCCAAAGAGACACGAGACTTATGGCACGCTGTGATCGCAAGTGCCAGATTAGGTGCGGTCCAGATTCTCAAGTTGAGCAGAATGTCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.66

Weight (kDa)

9.5

Isoelectric Point (pI)

63.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014186)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G25275 AT1G25275 AT1G25275
fragaria_vesca FvH4_5g30240 FvH4_5g30240 FvH4_5g30240
malus_domestica MD15G1417600.v1.1
prunus_persica Prupe.1G561600_v2.0.a1 Prupe.4G249100_v2.0.a1
pyrus_communis pycom15g37070
rosa_chinensis RchiOBHm_Chr7g0224551
rosa_roxburghii Rroxscaffold_3G00234640
rosa_rugosa Rorug07G0223800
rosa_samantha Rh7AG378800 Rh7BG360000 Rh7CG398500 Rh7DG369700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 255
AciI CCGC 3 cut(s) 10, 13, 357
AcsI RAATTY 1 cut(s) 101
AdeI CACNNNGTG 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 68
AgsI TTSAA 1 cut(s) 79
AjuI GAANNNNNNNTTGG 2 cut(s) 29, 61
Alw26I GTCTC 2 cut(s) 303, 310
ApeKI GCWGC 3 cut(s) 159, 263, 288
ApoI RAATTY 1 cut(s) 101
AspS9I GGNCC 2 cut(s) 33, 359
AsuHPI GGTGA 1 cut(s) 138
AvaII GGWCC 2 cut(s) 33, 359
BauI CACGAG 1 cut(s) 313
BbsI GAAGAC 1 cut(s) 84
BbvI GCAGC 3 cut(s) 171, 250, 300
BceAI ACGGC 2 cut(s) 55, 233
BcoDI GTCTC 2 cut(s) 303, 310
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 264
BisI GCNGC 4 cut(s) 13, 160, 264, 289
BlsI GCNGC 4 cut(s) 14, 161, 265, 290
Bme18I GGWCC 2 cut(s) 33, 359
BmgT120I GGNCC 2 cut(s) 33, 359
BmiI GGNNCC 1 cut(s) 34
BmsI GCATC 1 cut(s) 271
BpiI GAAGAC 1 cut(s) 84
BpuEI CTTGAG 1 cut(s) 354
Bsc4I CCNNNNNNNGG 1 cut(s) 68
Bse1I ACTGG 1 cut(s) 298
Bse3DI GCAATG 1 cut(s) 56
BseLI CCNNNNNNNGG 1 cut(s) 68
BseMI GCAATG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 298
BseXI GCAGC 3 cut(s) 171, 250, 300
Bsh1285I CGRYCG 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 10
BslI CCNNNNNNNGG 1 cut(s) 68
BsmAI GTCTC 2 cut(s) 303, 310
Bsp143I GATC 2 cut(s) 143, 334
BspACI CCGC 3 cut(s) 10, 13, 357
BspLI GGNNCC 1 cut(s) 34
BspMAI CTGCAG 1 cut(s) 268
BsrDI GCAATG 1 cut(s) 56
BsrI ACTGG 1 cut(s) 298
BssMI GATC 2 cut(s) 143, 334
BssSI CACGAG 1 cut(s) 313
Bst2BI CACGAG 1 cut(s) 313
Bst4CI ACNGT 2 cut(s) 84, 150
BstC8I GCNNGC 3 cut(s) 164, 286, 328
BstKTI GATC 2 cut(s) 146, 337
BstMAI GTCTC 2 cut(s) 303, 310
BstMBI GATC 2 cut(s) 143, 334
BstMCI CGRYCG 1 cut(s) 10
BstMWI GCNNNNNNNGC 3 cut(s) 12, 294, 336
BstSFI CTRYAG 1 cut(s) 264
BstV1I GCAGC 3 cut(s) 171, 250, 300
BstV2I GAAGAC 1 cut(s) 84
BtsI GCAGTG 1 cut(s) 22
BtsIMutI CAGTG 2 cut(s) 22, 291
Cac8I GCNNGC 3 cut(s) 164, 286, 328
Cfr13I GGNCC 2 cut(s) 33, 359
CseI GACGC 1 cut(s) 211
CviAII CATG 1 cut(s) 67
CviJI RGCY 2 cut(s) 42, 297
CviKI_1 RGCY 2 cut(s) 42, 297
DpnI GATC 2 cut(s) 145, 336
DpnII GATC 2 cut(s) 143, 334
DraIII CACNNNGTG 1 cut(s) 332
Eco47I GGWCC 2 cut(s) 33, 359
FaeI CATG 1 cut(s) 70
FaiI YATR 5 cut(s) 30, 68, 239, 279, 323
FatI CATG 1 cut(s) 66
FblI GTMKAC 1 cut(s) 255
Fnu4HI GCNGC 4 cut(s) 13, 160, 264, 289
Fsp4HI GCNGC 4 cut(s) 13, 160, 264, 289
FspBI CTAG 1 cut(s) 141
GluI GCNGC 4 cut(s) 13, 160, 264, 289
HgaI GACGC 1 cut(s) 211
Hin1II CATG 1 cut(s) 70
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HinfI GANTC 2 cut(s) 257, 365
HphI GGTGA 1 cut(s) 138
Hpy166II GTNNAC 2 cut(s) 256, 271
Hpy188III TCNNGA 2 cut(s) 135, 362
Hpy8I GTNNAC 2 cut(s) 256, 271
Hpy99I CGWCG 3 cut(s) 203, 206, 254
HpyAV CCTTC 1 cut(s) 165
HpyCH4III ACNGT 2 cut(s) 84, 150
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 2 cut(s) 266, 288
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 294, 336
HpySE526I ACGT 1 cut(s) 198
Hsp92II CATG 1 cut(s) 70
Kzo9I GATC 2 cut(s) 143, 334
LpnPI CCDG 5 cut(s) 148, 219, 279, 359, 375
Lsp1109I GCAGC 3 cut(s) 171, 250, 300
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 141
MaeII ACGT 1 cut(s) 198
MalI GATC 2 cut(s) 145, 336
MboI GATC 2 cut(s) 143, 334
MboII GAAGA 8 cut(s) 32, 35, 84, 139, 190, 199, 205, 220
MluCI AATT 2 cut(s) 101, 388
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 1 cut(s) 168
MseI TTAA 2 cut(s) 99, 391
MwoI GCNNNNNNNGC 3 cut(s) 12, 294, 336
NdeII GATC 2 cut(s) 143, 334
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 34
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PfeI GAWTC 1 cut(s) 365
PkrI GCNGC 4 cut(s) 14, 161, 265, 290
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 34
PspPI GGNCC 2 cut(s) 33, 359
PstI CTGCAG 1 cut(s) 268
SaqAI TTAA 2 cut(s) 99, 391
SatI GCNGC 4 cut(s) 13, 160, 264, 289
Sau3AI GATC 2 cut(s) 143, 334
Sau96I GGNCC 2 cut(s) 33, 359
SchI GAGTC 1 cut(s) 251
SetI ASST 2 cut(s) 201, 356
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 264
SinI GGWCC 2 cut(s) 33, 359
SmlI CTYRAG 1 cut(s) 369
SmoI CTYRAG 1 cut(s) 369
Sse9I AATT 2 cut(s) 101, 388
SsiI CCGC 3 cut(s) 10, 13, 357
SspMI CTAG 1 cut(s) 141
TaaI ACNGT 2 cut(s) 84, 150
TaiI ACGT 1 cut(s) 201
TasI AATT 2 cut(s) 101, 388
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 1 cut(s) 365
Tru1I TTAA 2 cut(s) 99, 391
Tru9I TTAA 2 cut(s) 99, 391
TscAI CASTG 2 cut(s) 22, 298
TseI GCWGC 3 cut(s) 159, 263, 288
TspDTI ATGAA 3 cut(s) 55, 200, 206
TspRI CASTG 2 cut(s) 22, 298
VpaK11BI GGWCC 2 cut(s) 33, 359
XapI RAATTY 1 cut(s) 101
XmiI GTMKAC 1 cut(s) 255
XspI CTAG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.