AT1G26500

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015114
Physical Location & Seq
Forward (+)
9158380 .. 9159897
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G26500.1

Sequence Viewer

Length: 1518 bp
ATGGCTGTGGCCGTCGTGACTTCTCGGAGGATGATTAACATCGGAAACTCAATTCGGCGATGCTTCATTCTCAACCACCGCTTCTTCTCCACCGAGCTAACTCCAACCACAATCACACCGATAAACCAAGACCATCTTCTCCGAGTCTGTACAATTCTCTACCAGCAACAGAACTCACCTGATTCACGTCTCGTCTCTAAACTCTCCTCCACCAAATTTCAACTAACTCACGAGTTCTTCCTCCAAGTCTGCAACAATTTCCCACTCTCGTGGCGTCCTGTACACCGTTTCTTCCTCTATTCTCAAACTCACCACCCTGATTTCACCCACACTTCCACTACCTCTAATAAGATGCTAGCAATCATCGGGAACTCAAGAAACATGGATCTTTTCTGGGAATTAGCTCAAGAGATCGGAAAACGTGGATTGGTTAACGATAAGACATTTCGGATTGTGTTGAAAACACTTGCTTCTGCTAGAGAGTTGAAGAAATGTGTAAACTATTTCCATTTGATGAACGGTTTTGGGTATTTGTATAATGTGGAAACGATGAATAGAGGAGTGGAGACTCTGTGTAAGGAGAAGCTTGTTGAAGAAGCTAAGTTTGTTTTTATTAAGCTGAAGGAGTTTATTAAACCTGATGAGATTACTTATAGGACGATGATACAAGGGTTTTGTGATGTTGGTGATTTGATTGAAGCTGCTAAGCTTTGGAATTTGATGATGGATGAAGGATTTGATGTTGATATCGAAGCTGGTAAAAAGATTATGGAAACACTTCTGAAGAAGAATCAGTTTGATGAAGCTTCTAAGGTGTTTTATGTTATGGTTTCGAAAAGAGGTGGTGATTTGGATGGGGGTTTCTACAGGGTGATGATTGATTGGTTGTGTAAAAACGGTAGGATTGATATGGCACGTAAGGTGTTCGATGAAATGCGTGAGAGAGGTGTTTATGTGGATAACTTAACTTGGGCGTCGTTAATCTATGGACTGTTGGTTAAACGAAGAGTTGTAGAGGCTTATGGGTTGGTGGAAGGGGTTGAGAATCCGGATATTAGTATCTATCATGGGTTGATAAAAGGGTTGGTGAAGATTAAACGGGCAAGCGAAGCAACAGAGGTTTTCAGGAAGATGATACAGAGAGGGTGCGAGCCAATAATGCATACGTATCTTATGTTGTTGCAAGGACATTTGGGGAGAAGGGGAAGGAAAGGGCCGGACCCGTTAGTGAATTTCGATACGATATTCGTTGGAGGTATGATCAAGGCGGGGAAACGGTTGGAAACTACAAAGTATATTGAGAGAACGTTGAAGAGAGGGCTTGAAGTTCCTAGGTTTGATTATAGCAAGTTCTTGCATTATTATTCTAATGAGGAAGGTGTGGTTATGTTTGAAGAGATGGCTAAGAAACTTAGAGAAGTGAGTTTGTTTGATTTGGCTGATATATTCCAGAGGTATGGAGAGAAGATGACTACAAGAGAGAGAAGGAGAGATAGAGACCAATTATTGAAGACGTAG

Protein Analysis

505

Amino Acids

58.9

Weight (kDa)

9.36

Isoelectric Point (pI)

34.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 180 - 227 3.8e-06 PPR repeat family
PPR_1 PF12854 211 - 241 5.3e-08 PPR repeat
PPR_2 PF13041 213 - 249 7.2e-06 PPR repeat family
PPR_2 PF13041 289 - 331 4.3e-11 PPR repeat family
PPR PF01535 289 - 317 3.8e-08 PPR repeat
PPR_1 PF12854 289 - 313 1e-05 PPR repeat
PPR_2 PF13041 350 - 396 1.4e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015114)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26500
fragaria_vesca FvH4_4g30220
malus_domestica MD09G1267500.v1.1
prunus_persica Prupe.1G285700_v2.0.a1
pyrus_communis pycom09g18040
rosa_chinensis RchiOBHm_Chr4g0438541
rosa_laevigata RLG00000006353
rosa_multiflora Rmu_sc0002327.1_g000006
rosa_roxburghii Rroxscaffold_5G00379540
rosa_rugosa Rorug04G0311200
rosa_samantha Rh4AG361700 Rh4BG373000 Rh4CG387000 Rh4DG367700
rosa_wichuraiana Rw0G006630 Rw0G016580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 1048
AciI CCGC 2 cut(s) 79, 1268
AclI AACGTT 1 cut(s) 1307
AclWI GGATC 1 cut(s) 393
AcoI YGGCCR 1 cut(s) 9
AcsI RAATTY 3 cut(s) 215, 715, 1231
AcuI CTGAAG 2 cut(s) 641, 803
AcyI GRCGYC 2 cut(s) 274, 974
AfaI GTAC 2 cut(s) 151, 282
AgsI TTSAA 9 cut(s) 221, 460, 487, 593, 698, 1312, 1325, 1394, 1510
AjiI CACGTC 1 cut(s) 188
AjuI GAANNNNNNNTTGG 2 cut(s) 120, 152
AleI CACNNNNGTG 1 cut(s) 268
AluBI AGCT 9 cut(s) 97, 404, 586, 599, 619, 701, 709, 755, 806
AluI AGCT 9 cut(s) 97, 404, 586, 599, 619, 701, 709, 755, 806
Alw26I GTCTC 4 cut(s) 194, 199, 560, 1491
AlwI GGATC 1 cut(s) 393
Aor13HI TCCGGA 1 cut(s) 1048
AoxI GGCC 2 cut(s) 9, 1214
ApeKI GCWGC 1 cut(s) 701
ApoI RAATTY 3 cut(s) 215, 715, 1231
Asp700I GAANNNNTTC 1 cut(s) 777
AspA2I CCTAGG 1 cut(s) 1331
AspS9I GGNCC 2 cut(s) 1214, 1219
AsuHPI GGTGA 7 cut(s) 168, 302, 316, 698, 857, 883, 1099
AsuII TTCGAA 1 cut(s) 833
AsuNHI GCTAGC 1 cut(s) 355
AvaII GGWCC 1 cut(s) 1219
AvrII CCTAGG 1 cut(s) 1331
BaeI ACNNNNGTAYC 2 cut(s) 656, 689
BauI CACGAG 2 cut(s) 230, 268
BbvI GCAGC 1 cut(s) 688
BccI CCATC 4 cut(s) 141, 718, 848, 1393
BclI TGATCA 1 cut(s) 1260
BcoDI GTCTC 4 cut(s) 194, 199, 560, 1491
BfaI CTAG 3 cut(s) 356, 477, 1332
BfmI CTRYAG 1 cut(s) 865
BisI GCNGC 1 cut(s) 702
BlnI CCTAGG 1 cut(s) 1331
BlpI GCTNAGC 1 cut(s) 705
BlsI GCNGC 1 cut(s) 703
Bme18I GGWCC 1 cut(s) 1219
BmgBI CACGTC 1 cut(s) 188
BmgT120I GGNCC 2 cut(s) 1214, 1219
BmiI GGNNCC 1 cut(s) 1221
BmsI GCATC 2 cut(s) 50, 342
BmtI GCTAGC 1 cut(s) 359
Bpu1102I GCTNAGC 1 cut(s) 705
Bpu14I TTCGAA 1 cut(s) 833
BpuEI CTTGAG 2 cut(s) 358, 390
BsaAI YACGTR 2 cut(s) 917, 1167
BsaBI GATNNNNATC 1 cut(s) 38
BsaHI GRCGYC 2 cut(s) 274, 974
BsaI GGTCTC 1 cut(s) 1491
BsaJI CCNNGG 1 cut(s) 1331
BsaWI WCCGGW 1 cut(s) 1048
BsaXI ACNNNNNCTCC 2 cut(s) 557, 587
Bse8I GATNNNNATC 1 cut(s) 38
BseAI TCCGGA 1 cut(s) 1048
BseDI CCNNGG 1 cut(s) 1331
BseGI GGATG 3 cut(s) 36, 733, 859
BseJI GATNNNNATC 1 cut(s) 38
BseRI GAGGAG 2 cut(s) 196, 573
BseXI GCAGC 1 cut(s) 688
BshFI GGCC 2 cut(s) 11, 1216
BsiSI CCGG 2 cut(s) 1049, 1217
BsmAI GTCTC 4 cut(s) 194, 199, 560, 1491
BsmBI CGTCTC 2 cut(s) 194, 199
BsnI GGCC 2 cut(s) 11, 1216
Bso31I GGTCTC 1 cut(s) 1491
Bsp119I TTCGAA 1 cut(s) 833
Bsp13I TCCGGA 1 cut(s) 1048
Bsp1407I TGTACA 2 cut(s) 149, 280
Bsp143I GATC 3 cut(s) 385, 411, 1260
Bsp1720I GCTNAGC 1 cut(s) 705
BspACI CCGC 2 cut(s) 79, 1268
BspANI GGCC 2 cut(s) 11, 1216
BspEI TCCGGA 1 cut(s) 1048
BspLI GGNNCC 1 cut(s) 1221
BspOI GCTAGC 1 cut(s) 359
BspPI GGATC 1 cut(s) 393
BspT104I TTCGAA 1 cut(s) 833
BspTNI GGTCTC 1 cut(s) 1491
BsrGI TGTACA 2 cut(s) 149, 280
BssECI CCNNGG 1 cut(s) 1331
BssMI GATC 3 cut(s) 385, 411, 1260
BssNI GRCGYC 2 cut(s) 274, 974
BssSI CACGAG 2 cut(s) 230, 268
BssT1I CCWWGG 1 cut(s) 1331
Bst2BI CACGAG 2 cut(s) 230, 268
Bst4CI ACNGT 5 cut(s) 287, 521, 899, 993, 1278
Bst6I CTCTTC 3 cut(s) 1000, 1307, 1389
BstACI GRCGYC 2 cut(s) 274, 974
BstAUI TGTACA 2 cut(s) 149, 280
BstBAI YACGTR 2 cut(s) 917, 1167
BstBI TTCGAA 1 cut(s) 833
BstC8I GCNNGC 3 cut(s) 357, 1105, 1151
BstDEI CTNAG 5 cut(s) 600, 705, 810, 1404, 1412
BstF5I GGATG 3 cut(s) 36, 733, 859
BstKTI GATC 3 cut(s) 388, 414, 1263
BstMAI GTCTC 4 cut(s) 194, 199, 560, 1491
BstMBI GATC 3 cut(s) 385, 411, 1260
BstMWI GCNNNNNNNGC 2 cut(s) 1109, 1159
BstSFI CTRYAG 1 cut(s) 865
BstSNI TACGTA 1 cut(s) 1167
BstV1I GCAGC 1 cut(s) 688
BstX2I RGATCY 1 cut(s) 385
BstXI CCANNNNNNTGG 2 cut(s) 270, 1457
BstYI RGATCY 1 cut(s) 385
BsuRI GGCC 2 cut(s) 11, 1216
BtgZI GCGATG 1 cut(s) 73
BtrI CACGTC 1 cut(s) 188
BtsCI GGATG 3 cut(s) 36, 733, 859
Cac8I GCNNGC 3 cut(s) 357, 1105, 1151
Cfr13I GGNCC 2 cut(s) 1214, 1219
CseI GACGC 2 cut(s) 263, 963
Csp6I GTAC 2 cut(s) 150, 281
CviAII CATG 2 cut(s) 382, 1067
CviQI GTAC 2 cut(s) 150, 281
DdeI CTNAG 5 cut(s) 600, 705, 810, 1404, 1412
DpnI GATC 3 cut(s) 387, 413, 1262
DpnII GATC 3 cut(s) 385, 411, 1260
EaeI YGGCCR 1 cut(s) 9
Eam1104I CTCTTC 3 cut(s) 1000, 1307, 1389
EarI CTCTTC 3 cut(s) 1000, 1307, 1389
Eco105I TACGTA 1 cut(s) 1167
Eco130I CCWWGG 1 cut(s) 1331
Eco31I GGTCTC 1 cut(s) 1491
Eco32I GATATC 1 cut(s) 748
Eco47I GGWCC 1 cut(s) 1219
Eco57I CTGAAG 2 cut(s) 641, 803
EcoRV GATATC 1 cut(s) 748
EcoT14I CCWWGG 1 cut(s) 1331
EcoT22I ATGCAT 1 cut(s) 1164
ErhI CCWWGG 1 cut(s) 1331
Esp3I CGTCTC 2 cut(s) 194, 199
FaeI CATG 2 cut(s) 385, 1070
FalI AAGNNNNNCTT 2 cut(s) 120, 152
FatI CATG 2 cut(s) 381, 1066
FauI CCCGC 1 cut(s) 1261
FbaI TGATCA 1 cut(s) 1260
Fnu4HI GCNGC 1 cut(s) 702
FokI GGATG 3 cut(s) 43, 740, 866
Fsp4HI GCNGC 1 cut(s) 702
FspBI CTAG 3 cut(s) 356, 477, 1332
GluI GCNGC 1 cut(s) 702
HaeIII GGCC 2 cut(s) 11, 1216
HapII CCGG 2 cut(s) 1049, 1217
HgaI GACGC 2 cut(s) 263, 963
Hin1I GRCGYC 2 cut(s) 274, 974
Hin1II CATG 2 cut(s) 385, 1070
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HindIII AAGCTT 3 cut(s) 584, 707, 804
HinfI GANTC 5 cut(s) 144, 182, 568, 790, 1045
HpaI GTTAAC 1 cut(s) 433
HpaII CCGG 2 cut(s) 1049, 1217
HphI GGTGA 7 cut(s) 168, 302, 316, 698, 857, 883, 1099
Hpy166II GTNNAC 3 cut(s) 283, 433, 499
Hpy188I TCNGA 6 cut(s) 27, 44, 143, 416, 450, 783
Hpy188III TCNNGA 8 cut(s) 16, 230, 367, 375, 407, 1049, 1126, 1450
Hpy8I GTNNAC 3 cut(s) 283, 433, 499
Hpy99I CGWCG 2 cut(s) 17, 979
HpyAV CCTTC 7 cut(s) 616, 725, 1028, 1194, 1200, 1370, 1479
HpyCH4III ACNGT 5 cut(s) 287, 521, 899, 993, 1278
HpyCH4IV ACGT 6 cut(s) 187, 421, 916, 1166, 1307, 1514
HpyCH4V TGCA 4 cut(s) 252, 1162, 1183, 1357
HpyF10VI GCNNNNNNNGC 2 cut(s) 1109, 1159
HpyF3I CTNAG 5 cut(s) 600, 705, 810, 1404, 1412
HpySE526I ACGT 6 cut(s) 187, 421, 916, 1166, 1307, 1514
Hsp92I GRCGYC 2 cut(s) 274, 974
Hsp92II CATG 2 cut(s) 385, 1070
Kpn2I TCCGGA 1 cut(s) 1048
Ksp22I TGATCA 1 cut(s) 1260
KspAI GTTAAC 1 cut(s) 433
Kzo9I GATC 3 cut(s) 385, 411, 1260
Lsp1109I GCAGC 1 cut(s) 688
LweI GCATC 2 cut(s) 50, 342
MaeI CTAG 3 cut(s) 356, 477, 1332
MaeII ACGT 6 cut(s) 187, 421, 916, 1166, 1307, 1514
MaeIII GTNAC 1 cut(s) 16
MalI GATC 3 cut(s) 387, 413, 1262
MboI GATC 3 cut(s) 385, 411, 1260
MflI RGATCY 1 cut(s) 385
MluCI AATT 8 cut(s) 51, 153, 215, 256, 398, 715, 1231, 1502
MlyI GAGTC 2 cut(s) 153, 562
MmeI TCCRAC 3 cut(s) 128, 1231, 1260
Mph1103I ATGCAT 1 cut(s) 1164
MroI TCCGGA 1 cut(s) 1048
MroXI GAANNNNTTC 1 cut(s) 777
MseI TTAA 8 cut(s) 36, 432, 615, 633, 965, 980, 999, 1095
MslI CAYNNNNRTG 1 cut(s) 268
MspI CCGG 2 cut(s) 1049, 1217
MwoI GCNNNNNNNGC 2 cut(s) 1109, 1159
NdeII GATC 3 cut(s) 385, 411, 1260
NheI GCTAGC 1 cut(s) 355
NlaIII CATG 2 cut(s) 385, 1070
NlaIV GGNNCC 1 cut(s) 1221
NmuCI GTSAC 1 cut(s) 16
NsiI ATGCAT 1 cut(s) 1164
NspV TTCGAA 1 cut(s) 833
OliI CACNNNNGTG 1 cut(s) 268
PdmI GAANNNNTTC 1 cut(s) 777
PfeI GAWTC 3 cut(s) 182, 790, 1045
PkrI GCNGC 1 cut(s) 703
PleI GAGTC 2 cut(s) 152, 562
PpsI GAGTC 2 cut(s) 152, 562
Ppu21I YACGTR 2 cut(s) 917, 1167
Psp1406I AACGTT 1 cut(s) 1307
PspN4I GGNNCC 1 cut(s) 1221
PspPI GGNCC 2 cut(s) 1214, 1219
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 2 cut(s) 151, 282
RsaNI GTAC 2 cut(s) 150, 281
RseI CAYNNNNRTG 1 cut(s) 268
SaqAI TTAA 8 cut(s) 36, 432, 615, 633, 965, 980, 999, 1095
SatI GCNGC 1 cut(s) 702
Sau3AI GATC 3 cut(s) 385, 411, 1260
Sau96I GGNCC 2 cut(s) 1214, 1219
SchI GAGTC 2 cut(s) 153, 562
SfaNI GCATC 2 cut(s) 50, 342
SfcI CTRYAG 1 cut(s) 865
SfuI TTCGAA 1 cut(s) 833
SinI GGWCC 1 cut(s) 1219
SmiMI CAYNNNNRTG 1 cut(s) 268
SmlI CTYRAG 2 cut(s) 373, 405
SmoI CTYRAG 2 cut(s) 373, 405
SnaBI TACGTA 1 cut(s) 1167
Sse9I AATT 8 cut(s) 51, 153, 215, 256, 398, 715, 1231, 1502
SsiI CCGC 2 cut(s) 79, 1268
SspMI CTAG 3 cut(s) 356, 477, 1332
StyI CCWWGG 1 cut(s) 1331
TaaI ACNGT 5 cut(s) 287, 521, 899, 993, 1278
TaiI ACGT 6 cut(s) 190, 424, 919, 1169, 1310, 1517
TaqI TCGA 4 cut(s) 750, 833, 927, 1236
TasI AATT 8 cut(s) 51, 153, 215, 256, 398, 715, 1231, 1502
TatI WGTACW 2 cut(s) 149, 280
TfiI GAWTC 3 cut(s) 182, 790, 1045
Tru1I TTAA 8 cut(s) 36, 432, 615, 633, 965, 980, 999, 1095
Tru9I TTAA 8 cut(s) 36, 432, 615, 633, 965, 980, 999, 1095
TseFI GTSAC 1 cut(s) 16
TseI GCWGC 1 cut(s) 701
Tsp45I GTSAC 1 cut(s) 16
TspDTI ATGAA 6 cut(s) 55, 530, 566, 744, 816, 945
VpaK11BI GGWCC 1 cut(s) 1219
XapI RAATTY 3 cut(s) 215, 715, 1231
XmaJI CCTAGG 1 cut(s) 1331
XmnI GAANNNNTTC 1 cut(s) 777
XspI CTAG 3 cut(s) 356, 477, 1332
Zsp2I ATGCAT 1 cut(s) 1164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.