Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G26500 |
| fragaria_vesca | FvH4_4g30220 |
| malus_domestica | MD09G1267500.v1.1 |
| prunus_persica | Prupe.1G285700_v2.0.a1 |
| pyrus_communis | pycom09g18040 |
| rosa_chinensis | RchiOBHm_Chr4g0438541 |
| rosa_laevigata | RLG00000006353 |
| rosa_multiflora | Rmu_sc0002327.1_g000006 |
| rosa_roxburghii | Rroxscaffold_5G00379540 |
| rosa_rugosa | Rorug04G0311200 |
| rosa_samantha | Rh4AG361700 Rh4BG373000 Rh4CG387000 Rh4DG367700 |
| rosa_wichuraiana | Rw0G006630 Rw0G016580 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1323 |
| AccB1I | GGYRCC | 2 cut(s) | 731, 1306 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 391 |
| AciI | CCGC | 3 cut(s) | 52, 256, 1418 |
| AclWI | GGATC | 4 cut(s) | 935, 1193, 1201, 1206 |
| AcoI | YGGCCR | 2 cut(s) | 447, 1449 |
| AcsI | RAATTY | 3 cut(s) | 479, 694, 1210 |
| AcuI | CTGAAG | 2 cut(s) | 1536, 1538 |
| AcyI | GRCGYC | 1 cut(s) | 400 |
| AfaI | GTAC | 4 cut(s) | 632, 1482, 1574, 1762 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 391, 456, 728 |
| AflIII | ACRYGT | 2 cut(s) | 1038, 1622 |
| AjiI | CACGTC | 1 cut(s) | 1623 |
| AjnI | CCWGG | 3 cut(s) | 225, 353, 455 |
| AluBI | AGCT | 5 cut(s) | 367, 565, 893, 977, 1503 |
| AluI | AGCT | 5 cut(s) | 367, 565, 893, 977, 1503 |
| Alw21I | GWGCWC | 1 cut(s) | 1608 |
| Alw26I | GTCTC | 3 cut(s) | 322, 518, 746 |
| Alw44I | GTGCAC | 1 cut(s) | 1604 |
| AlwI | GGATC | 4 cut(s) | 935, 1193, 1201, 1206 |
| Ama87I | CYCGRG | 1 cut(s) | 161 |
| AoxI | GGCC | 9 cut(s) | 257, 351, 447, 453, 576, 614, 967, 1060, 1449 |
| ApaLI | GTGCAC | 1 cut(s) | 1604 |
| ApoI | RAATTY | 3 cut(s) | 479, 694, 1210 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 483 |
| AspS9I | GGNCC | 3 cut(s) | 258, 614, 1060 |
| AsuC2I | CCSGG | 1 cut(s) | 722 |
| AsuHPI | GGTGA | 5 cut(s) | 199, 421, 677, 791, 823 |
| AvaI | CYCGRG | 1 cut(s) | 161 |
| BaeGI | GKGCMC | 1 cut(s) | 1608 |
| BalI | TGGCCA | 2 cut(s) | 449, 1451 |
| BamHI | GGATCC | 1 cut(s) | 1198 |
| BanI | GGYRCC | 2 cut(s) | 731, 1306 |
| BauI | CACGAG | 1 cut(s) | 1453 |
| Bbv12I | GWGCWC | 1 cut(s) | 1608 |
| BccI | CCATC | 5 cut(s) | 103, 143, 694, 742, 814 |
| BceAI | ACGGC | 2 cut(s) | 387, 982 |
| BciT130I | CCWGG | 3 cut(s) | 227, 355, 457 |
| BclI | TGATCA | 3 cut(s) | 3, 1053, 1287 |
| BcnI | CCSGG | 1 cut(s) | 722 |
| BcoDI | GTCTC | 3 cut(s) | 322, 518, 746 |
| BfaI | CTAG | 3 cut(s) | 978, 1259, 1311 |
| BisI | GCNGC | 1 cut(s) | 257 |
| BlsI | GCNGC | 1 cut(s) | 258 |
| BmcAI | AGTACT | 1 cut(s) | 1482 |
| Bme1390I | CCNGG | 4 cut(s) | 227, 355, 457, 722 |
| BmeT110I | CYCGRG | 1 cut(s) | 161 |
| BmgBI | CACGTC | 1 cut(s) | 1623 |
| BmgT120I | GGNCC | 3 cut(s) | 258, 614, 1060 |
| BmiI | GGNNCC | 4 cut(s) | 733, 1200, 1308, 1533 |
| BmrFI | CCNGG | 4 cut(s) | 227, 355, 457, 722 |
| BmrI | ACTGGG | 1 cut(s) | 95 |
| BmuI | ACTGGG | 1 cut(s) | 95 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1467, 1499 |
| BpmI | CTGGAG | 1 cut(s) | 209 |
| BpuEI | CTTGAG | 1 cut(s) | 1322 |
| BpuMI | CCSGG | 1 cut(s) | 722 |
| Bsa29I | ATCGAT | 1 cut(s) | 772 |
| BsaAI | YACGTR | 1 cut(s) | 630 |
| BsaHI | GRCGYC | 1 cut(s) | 400 |
| BsaI | GGTCTC | 1 cut(s) | 746 |
| BsaJI | CCNNGG | 4 cut(s) | 444, 450, 456, 1045 |
| BsaWI | WCCGGW | 1 cut(s) | 1027 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 391, 456, 728 |
| Bse1I | ACTGG | 2 cut(s) | 101, 963 |
| BseBI | CCWGG | 3 cut(s) | 227, 355, 457 |
| BseCI | ATCGAT | 1 cut(s) | 772 |
| BseDI | CCNNGG | 4 cut(s) | 444, 450, 456, 1045 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 391, 456, 728 |
| BseMII | CTCAG | 2 cut(s) | 89, 1382 |
| BseNI | ACTGG | 2 cut(s) | 101, 963 |
| BseRI | GAGGAG | 4 cut(s) | 110, 359, 1388, 1544 |
| BseSI | GKGCMC | 1 cut(s) | 1608 |
| BseYI | CCCAGC | 1 cut(s) | 109 |
| BsgI | GTGCAG | 1 cut(s) | 115 |
| Bsh1285I | CGRYCG | 1 cut(s) | 315 |
| BshFI | GGCC | 9 cut(s) | 259, 353, 449, 455, 578, 616, 969, 1062, 1451 |
| BshNI | GGYRCC | 2 cut(s) | 731, 1306 |
| BshVI | ATCGAT | 1 cut(s) | 772 |
| BsiEI | CGRYCG | 1 cut(s) | 315 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1608 |
| BsiHKCI | CYCGRG | 1 cut(s) | 161 |
| BsiSI | CCGG | 2 cut(s) | 722, 1028 |
| BslFI | GGGAC | 3 cut(s) | 389, 408, 1611 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 391, 456, 728 |
| BsmAI | GTCTC | 3 cut(s) | 322, 518, 746 |
| BsmBI | CGTCTC | 1 cut(s) | 322 |
| BsmFI | GGGAC | 3 cut(s) | 389, 408, 1611 |
| BsnI | GGCC | 9 cut(s) | 259, 353, 449, 455, 578, 616, 969, 1062, 1451 |
| Bso31I | GGTCTC | 1 cut(s) | 746 |
| BsoBI | CYCGRG | 1 cut(s) | 161 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1608 |
| Bsp1407I | TGTACA | 1 cut(s) | 1760 |
| Bsp143I | GATC | 6 cut(s) | 3, 927, 1053, 1193, 1198, 1287 |
| Bsp19I | CCATGG | 1 cut(s) | 1045 |
| BspACI | CCGC | 3 cut(s) | 52, 256, 1418 |
| BspANI | GGCC | 9 cut(s) | 259, 353, 449, 455, 578, 616, 969, 1062, 1451 |
| BspCNI | CTCAG | 2 cut(s) | 88, 1383 |
| BspDI | ATCGAT | 1 cut(s) | 772 |
| BspHI | TCATGA | 1 cut(s) | 492 |
| BspLI | GGNNCC | 4 cut(s) | 733, 1200, 1308, 1533 |
| BspPI | GGATC | 4 cut(s) | 935, 1193, 1201, 1206 |
| BspT107I | GGYRCC | 2 cut(s) | 731, 1306 |
| BspTNI | GGTCTC | 1 cut(s) | 746 |
| BsrGI | TGTACA | 1 cut(s) | 1760 |
| BsrI | ACTGG | 2 cut(s) | 101, 963 |
| BssECI | CCNNGG | 4 cut(s) | 444, 450, 456, 1045 |
| BssMI | GATC | 6 cut(s) | 3, 927, 1053, 1193, 1198, 1287 |
| BssNI | GRCGYC | 1 cut(s) | 400 |
| BssSI | CACGAG | 1 cut(s) | 1453 |
| BssT1I | CCWWGG | 3 cut(s) | 444, 450, 1045 |
| Bst2BI | CACGAG | 1 cut(s) | 1453 |
| Bst2UI | CCWGG | 3 cut(s) | 227, 355, 457 |
| Bst4CI | ACNGT | 4 cut(s) | 239, 316, 779, 1610 |
| Bst6I | CTCTTC | 2 cut(s) | 53, 275 |
| BstACI | GRCGYC | 1 cut(s) | 400 |
| BstAUI | TGTACA | 1 cut(s) | 1760 |
| BstBAI | YACGTR | 1 cut(s) | 630 |
| BstC8I | GCNNGC | 1 cut(s) | 1501 |
| BstDEI | CTNAG | 3 cut(s) | 75, 561, 1391 |
| BstDSI | CCRYGG | 1 cut(s) | 1045 |
| BstKTI | GATC | 6 cut(s) | 6, 930, 1056, 1196, 1201, 1290 |
| BstMAI | GTCTC | 3 cut(s) | 322, 518, 746 |
| BstMBI | GATC | 6 cut(s) | 3, 927, 1053, 1193, 1198, 1287 |
| BstMCI | CGRYCG | 1 cut(s) | 315 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 1138 |
| BstNI | CCWGG | 3 cut(s) | 227, 355, 457 |
| BstNSI | RCATGY | 2 cut(s) | 382, 1141 |
| BstSCI | CCNGG | 4 cut(s) | 225, 353, 455, 720 |
| BstSLI | GKGCMC | 1 cut(s) | 1608 |
| BstSNI | TACGTA | 1 cut(s) | 630 |
| BstX2I | RGATCY | 1 cut(s) | 1198 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1276 |
| BstYI | RGATCY | 1 cut(s) | 1198 |
| Bsu15I | ATCGAT | 1 cut(s) | 772 |
| BsuRI | GGCC | 9 cut(s) | 259, 353, 449, 455, 578, 616, 969, 1062, 1451 |
| BsuTUI | ATCGAT | 1 cut(s) | 772 |
| BtgI | CCRYGG | 1 cut(s) | 1045 |
| BtrI | CACGTC | 1 cut(s) | 1623 |
| BtsIMutI | CAGTG | 2 cut(s) | 108, 956 |
| Cac8I | GCNNGC | 1 cut(s) | 1501 |
| CciI | TCATGA | 1 cut(s) | 492 |
| Cfr13I | GGNCC | 3 cut(s) | 258, 614, 1060 |
| ClaI | ATCGAT | 1 cut(s) | 772 |
| CseI | GACGC | 1 cut(s) | 408 |
| Csp6I | GTAC | 4 cut(s) | 631, 1481, 1573, 1761 |
| CviQI | GTAC | 4 cut(s) | 631, 1481, 1573, 1761 |
| DdeI | CTNAG | 3 cut(s) | 75, 561, 1391 |
| DpnI | GATC | 6 cut(s) | 5, 929, 1055, 1195, 1200, 1289 |
| DpnII | GATC | 6 cut(s) | 3, 927, 1053, 1193, 1198, 1287 |
| DraI | TTTAAA | 1 cut(s) | 438 |
| EaeI | YGGCCR | 2 cut(s) | 447, 1449 |
| Eam1104I | CTCTTC | 2 cut(s) | 53, 275 |
| EarI | CTCTTC | 2 cut(s) | 53, 275 |
| EciI | GGCGGA | 1 cut(s) | 1433 |
| Eco105I | TACGTA | 1 cut(s) | 630 |
| Eco130I | CCWWGG | 3 cut(s) | 444, 450, 1045 |
| Eco31I | GGTCTC | 1 cut(s) | 746 |
| Eco57I | CTGAAG | 2 cut(s) | 1536, 1538 |
| Eco88I | CYCGRG | 1 cut(s) | 161 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1060 |
| EcoRII | CCWGG | 3 cut(s) | 225, 353, 455 |
| EcoT14I | CCWWGG | 3 cut(s) | 444, 450, 1045 |
| ErhI | CCWWGG | 3 cut(s) | 444, 450, 1045 |
| Esp3I | CGTCTC | 1 cut(s) | 322 |
| FaqI | GGGAC | 3 cut(s) | 389, 408, 1611 |
| FbaI | TGATCA | 3 cut(s) | 3, 1053, 1287 |
| Fnu4HI | GCNGC | 1 cut(s) | 257 |
| Fsp4HI | GCNGC | 1 cut(s) | 257 |
| FspBI | CTAG | 3 cut(s) | 978, 1259, 1311 |
| GluI | GCNGC | 1 cut(s) | 257 |
| GsaI | CCCAGC | 1 cut(s) | 113 |
| GsuI | CTGGAG | 1 cut(s) | 209 |
| HaeIII | GGCC | 9 cut(s) | 259, 353, 449, 455, 578, 616, 969, 1062, 1451 |
| HapII | CCGG | 2 cut(s) | 722, 1028 |
| HgaI | GACGC | 1 cut(s) | 408 |
| Hin1I | GRCGYC | 1 cut(s) | 400 |
| HincII | GTYRAC | 2 cut(s) | 72, 337 |
| HindII | GTYRAC | 2 cut(s) | 72, 337 |
| HindIII | AAGCTT | 1 cut(s) | 563 |
| HinfI | GANTC | 6 cut(s) | 68, 126, 164, 547, 605, 769 |
| HpaII | CCGG | 2 cut(s) | 722, 1028 |
| HphI | GGTGA | 5 cut(s) | 199, 421, 677, 791, 823 |
| Hpy166II | GTNNAC | 6 cut(s) | 72, 106, 337, 964, 1606, 1761 |
| Hpy188I | TCNGA | 7 cut(s) | 8, 78, 125, 801, 1198, 1431, 1557 |
| Hpy188III | TCNNGA | 3 cut(s) | 493, 763, 1636 |
| Hpy8I | GTNNAC | 6 cut(s) | 72, 106, 337, 964, 1606, 1761 |
| Hpy99I | CGWCG | 1 cut(s) | 402 |
| HpyCH4III | ACNGT | 4 cut(s) | 239, 316, 779, 1610 |
| HpyCH4IV | ACGT | 4 cut(s) | 339, 629, 1038, 1622 |
| HpyCH4V | TGCA | 9 cut(s) | 132, 234, 916, 1141, 1162, 1336, 1589, 1606, 1647 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 1138 |
| HpyF3I | CTNAG | 3 cut(s) | 75, 561, 1391 |
| HpySE526I | ACGT | 4 cut(s) | 339, 629, 1038, 1622 |
| Hsp92I | GRCGYC | 1 cut(s) | 400 |
| Ksp22I | TGATCA | 3 cut(s) | 3, 1053, 1287 |
| Kzo9I | GATC | 6 cut(s) | 3, 927, 1053, 1193, 1198, 1287 |
| LmnI | GCTCC | 3 cut(s) | 372, 387, 1531 |
| MaeI | CTAG | 3 cut(s) | 978, 1259, 1311 |
| MaeII | ACGT | 4 cut(s) | 339, 629, 1038, 1622 |
| MaeIII | GTNAC | 3 cut(s) | 165, 625, 1254 |
| MalI | GATC | 6 cut(s) | 5, 929, 1055, 1195, 1200, 1289 |
| MboI | GATC | 6 cut(s) | 3, 927, 1053, 1193, 1198, 1287 |
| MboII | GAAGA | 8 cut(s) | 40, 211, 262, 265, 892, 1476, 1479, 1485 |
| MflI | RGATCY | 1 cut(s) | 1198 |
| MhlI | GDGCHC | 1 cut(s) | 1608 |
| MlsI | TGGCCA | 2 cut(s) | 449, 1451 |
| MluCI | AATT | 6 cut(s) | 298, 479, 694, 940, 1079, 1210 |
| MluNI | TGGCCA | 2 cut(s) | 449, 1451 |
| MlyI | GAGTC | 5 cut(s) | 77, 135, 173, 556, 614 |
| MmeI | TCCRAC | 2 cut(s) | 219, 226 |
| Mox20I | TGGCCA | 2 cut(s) | 449, 1451 |
| MroXI | GAANNNNTTC | 1 cut(s) | 483 |
| MscI | TGGCCA | 2 cut(s) | 449, 1451 |
| MseI | TTAA | 7 cut(s) | 437, 594, 1035, 1067, 1073, 1116, 1242 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1611 |
| Msp20I | TGGCCA | 2 cut(s) | 449, 1451 |
| MspI | CCGG | 2 cut(s) | 722, 1028 |
| MspR9I | CCNGG | 4 cut(s) | 227, 355, 457, 722 |
| MvaI | CCWGG | 3 cut(s) | 227, 355, 457 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 1138 |
| NciI | CCSGG | 1 cut(s) | 722 |
| NcoI | CCATGG | 1 cut(s) | 1045 |
| NdeII | GATC | 6 cut(s) | 3, 927, 1053, 1193, 1198, 1287 |
| NlaIV | GGNNCC | 4 cut(s) | 733, 1200, 1308, 1533 |
| NmuCI | GTSAC | 2 cut(s) | 165, 1254 |
| NspI | RCATGY | 2 cut(s) | 382, 1141 |
| PagI | TCATGA | 1 cut(s) | 492 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 317 |
| PdmI | GAANNNNTTC | 1 cut(s) | 483 |
| PfeI | GAWTC | 1 cut(s) | 769 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 391 |
| PkrI | GCNGC | 1 cut(s) | 258 |
| PleI | GAGTC | 5 cut(s) | 76, 134, 172, 555, 613 |
| PpsI | GAGTC | 5 cut(s) | 76, 134, 172, 555, 613 |
| Ppu21I | YACGTR | 1 cut(s) | 630 |
| PsiI | TTATAA | 1 cut(s) | 1323 |
| Psp6I | CCWGG | 3 cut(s) | 225, 353, 455 |
| PspFI | CCCAGC | 1 cut(s) | 109 |
| PspGI | CCWGG | 3 cut(s) | 225, 353, 455 |
| PspN4I | GGNNCC | 4 cut(s) | 733, 1200, 1308, 1533 |
| PspPI | GGNCC | 3 cut(s) | 258, 614, 1060 |
| PsuI | RGATCY | 1 cut(s) | 1198 |
| RsaI | GTAC | 4 cut(s) | 632, 1482, 1574, 1762 |
| RsaNI | GTAC | 4 cut(s) | 631, 1481, 1573, 1761 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1611 |
| SaqAI | TTAA | 7 cut(s) | 437, 594, 1035, 1067, 1073, 1116, 1242 |
| SatI | GCNGC | 1 cut(s) | 257 |
| Sau3AI | GATC | 6 cut(s) | 3, 927, 1053, 1193, 1198, 1287 |
| Sau96I | GGNCC | 3 cut(s) | 258, 614, 1060 |
| ScaI | AGTACT | 1 cut(s) | 1482 |
| SchI | GAGTC | 5 cut(s) | 77, 135, 173, 556, 614 |
| ScrFI | CCNGG | 4 cut(s) | 227, 355, 457, 722 |
| SduI | GDGCHC | 1 cut(s) | 1608 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1611 |
| SmlI | CTYRAG | 1 cut(s) | 1301 |
| SmoI | CTYRAG | 1 cut(s) | 1301 |
| SnaBI | TACGTA | 1 cut(s) | 630 |
| Sse9I | AATT | 6 cut(s) | 298, 479, 694, 940, 1079, 1210 |
| SsiI | CCGC | 3 cut(s) | 52, 256, 1418 |
| SspI | AATATT | 1 cut(s) | 1642 |
| SspMI | CTAG | 3 cut(s) | 978, 1259, 1311 |
| StyD4I | CCNGG | 4 cut(s) | 225, 353, 455, 720 |
| StyI | CCWWGG | 3 cut(s) | 444, 450, 1045 |
| TaaI | ACNGT | 4 cut(s) | 239, 316, 779, 1610 |
| TaiI | ACGT | 4 cut(s) | 342, 632, 1041, 1625 |
| TaqI | TCGA | 5 cut(s) | 608, 772, 906, 930, 1371 |
| TasI | AATT | 6 cut(s) | 298, 479, 694, 940, 1079, 1210 |
| TatI | WGTACW | 3 cut(s) | 1480, 1572, 1760 |
| TauI | GCSGC | 1 cut(s) | 259 |
| TfiI | GAWTC | 1 cut(s) | 769 |
| Tru1I | TTAA | 7 cut(s) | 437, 594, 1035, 1067, 1073, 1116, 1242 |
| Tru9I | TTAA | 7 cut(s) | 437, 594, 1035, 1067, 1073, 1116, 1242 |
| TscAI | CASTG | 2 cut(s) | 108, 963 |
| TseFI | GTSAC | 2 cut(s) | 165, 1254 |
| Tsp45I | GTSAC | 2 cut(s) | 165, 1254 |
| TspRI | CASTG | 2 cut(s) | 108, 963 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 391 |
| VneI | GTGCAC | 1 cut(s) | 1604 |
| XapI | RAATTY | 3 cut(s) | 479, 694, 1210 |
| XceI | RCATGY | 2 cut(s) | 382, 1141 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1273 |
| XmnI | GAANNNNTTC | 1 cut(s) | 483 |
| XspI | CTAG | 3 cut(s) | 978, 1259, 1311 |
| ZrmI | AGTACT | 1 cut(s) | 1482 |