Prupe.1G285700_v2.0.a1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
28655506 .. 28657837
2332 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G285700.1

Sequence Viewer

Length: 1767 bp
ATGATCAGACAAAGAAGTAGTAGCCTCACAAAGCCCCTCATAAACCTCTTCCGCTTCATAACAACCGAGTCAACTCAGACCCAACTCGCCACCCCATCCCCAGTGAACCCAGCCCACCTCCTCCGAGTCTGCACCATCCTCTACCAGCAACAGAACTCGCCCGAGTCACGCCTCCACTCAAACCTCAACTCGTCCAACTTCCAACTCACCCATGAGTTCTTCCTCCAGGTATGCAACAGTTTCCCTCTTTCATGGCGGCCCGTCTATCTCTTCTTCCTCTACACCCAAACCCACCCCAATTTCACTCACACGACCGTCTCGTTCAACAAAATGGTTGACGTAATCGGCAAGGCCAGGAACATCCAGCTCCTCTGGGACATGCTCCATGAAATGGGACGACGCCGTTTGGTGAATGATAAGACTTTTCTTATTGCTTTAAAGACCTTGGCCAAGGCCAGGGAGTTGAACAAGTGTGTTGAATTTTTTCATGTCATGAATGGGTATGGGTTTGATTATAGTTTGGAGACTTTGAATAAGGTGGTTGAGAGTCTTTGTGGGTCTAAGCTTGTTGTTGAGGCCAAGTTCATAGTTTTTAAGTTGAAGGAGTCGATTGGGCCTAATGGGGTTACGTACAGGTGTTTGATTGAAGGGTTTTGTGATGTGGGTGATTTGATTGAGGCTTCAAAGATTTGGAATTTGATGGTGGATGAAGGGTTTGACCCGGATATTGGTGCCATTGAGAAAATGATGGAGACCCTTTTCAAGACGAATCGATACGGTGAGGCATTGAAGGTTTTTCAGATGATGAGGGTGAATAGGATGGATGATTTGGGTCTTTCAACTTATAGGCTTGTGATTGAGTGGATGTGTAAAAGTGGGAAGATTGAGGAAGCTCATGTGGTGTTCGAGGAAATGCAAAAGAGAAGGATCGAAGCAGATAATTCCACATTGGCTTCACTGGTTTACGGCCTTTTAGCTAGAGGTAGAGTTAGAGTGGCATATAAGATTGTGGAAGGGATTGAAAAACCGGATATTAACGTGTTCCATGGGATGATCAAGGGCCTTTTAAGGTTAAGAAAATTGCGTGAAGCAACAGAAGTGTTTAGGGAGATGATTAAAAAGGGGTGTGAGCCTAACATGCACACTTATATCATGTTATTGCAAGGACATTTGGGAAAGAGAGGAAGGAAGGGATCGGATCCTCTTGTGAATTTTGATACCATTTTTGTTGGTGGTCTGGTTAAGGCAGGGAAGTCACTAGAAGCCACCAAGTATGTGGAGAGAGTGATCAAAAGAGGACTTGAGGTGCCTAGATTTGATTATAATAAGTTTTTGCATTACTACTCAAATGAGGAAGGGGTGGGGATGTTCGAGGAGGTGGGGAAAAAACTGAGGGAAGTCGGGTTGGTTGATTTGGCGGATATTTTTCAGAGATACGGGGAGAAAATGGCCACGAGAGATAGAAGAAGAAATAGAGAAGTACTCGGTTATTCTTCTGCGAGCTTTTATGTGGCTGAAGGTTCATTTGAGGAGCCAATGGGGAGGGAGAGCCTTCAGAAACTATGGCAGAAGTACAAGGTTGATATTGCAGTATATGGTTATGTGCACAGTTATGAAAGGACGTGTCCCATTTTCCAGAATATTTGCACCAATAAGGAGAAGCACCATTATCATTTGGCATGGCTTTCAGTTCATCATCCTGTTCTGTTTCATTGGAACTACTTTGGGTGCTGGAATGTAGAGGTTCATTGGATGTTGTGTACATAA

Protein Analysis

589

Amino Acids

68.35

Weight (kDa)

9.06

Isoelectric Point (pI)

39.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015114)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26500
fragaria_vesca FvH4_4g30220
malus_domestica MD09G1267500.v1.1
prunus_persica Prupe.1G285700_v2.0.a1
pyrus_communis pycom09g18040
rosa_chinensis RchiOBHm_Chr4g0438541
rosa_laevigata RLG00000006353
rosa_multiflora Rmu_sc0002327.1_g000006
rosa_roxburghii Rroxscaffold_5G00379540
rosa_rugosa Rorug04G0311200
rosa_samantha Rh4AG361700 Rh4BG373000 Rh4CG387000 Rh4DG367700
rosa_wichuraiana Rw0G006630 Rw0G016580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1323
AccB1I GGYRCC 2 cut(s) 731, 1306
AccB7I CCANNNNNTGG 1 cut(s) 391
AciI CCGC 3 cut(s) 52, 256, 1418
AclWI GGATC 4 cut(s) 935, 1193, 1201, 1206
AcoI YGGCCR 2 cut(s) 447, 1449
AcsI RAATTY 3 cut(s) 479, 694, 1210
AcuI CTGAAG 2 cut(s) 1536, 1538
AcyI GRCGYC 1 cut(s) 400
AfaI GTAC 4 cut(s) 632, 1482, 1574, 1762
AfiI CCNNNNNNNGG 3 cut(s) 391, 456, 728
AflIII ACRYGT 2 cut(s) 1038, 1622
AjiI CACGTC 1 cut(s) 1623
AjnI CCWGG 3 cut(s) 225, 353, 455
AluBI AGCT 5 cut(s) 367, 565, 893, 977, 1503
AluI AGCT 5 cut(s) 367, 565, 893, 977, 1503
Alw21I GWGCWC 1 cut(s) 1608
Alw26I GTCTC 3 cut(s) 322, 518, 746
Alw44I GTGCAC 1 cut(s) 1604
AlwI GGATC 4 cut(s) 935, 1193, 1201, 1206
Ama87I CYCGRG 1 cut(s) 161
AoxI GGCC 9 cut(s) 257, 351, 447, 453, 576, 614, 967, 1060, 1449
ApaLI GTGCAC 1 cut(s) 1604
ApoI RAATTY 3 cut(s) 479, 694, 1210
Asp700I GAANNNNTTC 1 cut(s) 483
AspS9I GGNCC 3 cut(s) 258, 614, 1060
AsuC2I CCSGG 1 cut(s) 722
AsuHPI GGTGA 5 cut(s) 199, 421, 677, 791, 823
AvaI CYCGRG 1 cut(s) 161
BaeGI GKGCMC 1 cut(s) 1608
BalI TGGCCA 2 cut(s) 449, 1451
BamHI GGATCC 1 cut(s) 1198
BanI GGYRCC 2 cut(s) 731, 1306
BauI CACGAG 1 cut(s) 1453
Bbv12I GWGCWC 1 cut(s) 1608
BccI CCATC 5 cut(s) 103, 143, 694, 742, 814
BceAI ACGGC 2 cut(s) 387, 982
BciT130I CCWGG 3 cut(s) 227, 355, 457
BclI TGATCA 3 cut(s) 3, 1053, 1287
BcnI CCSGG 1 cut(s) 722
BcoDI GTCTC 3 cut(s) 322, 518, 746
BfaI CTAG 3 cut(s) 978, 1259, 1311
BisI GCNGC 1 cut(s) 257
BlsI GCNGC 1 cut(s) 258
BmcAI AGTACT 1 cut(s) 1482
Bme1390I CCNGG 4 cut(s) 227, 355, 457, 722
BmeT110I CYCGRG 1 cut(s) 161
BmgBI CACGTC 1 cut(s) 1623
BmgT120I GGNCC 3 cut(s) 258, 614, 1060
BmiI GGNNCC 4 cut(s) 733, 1200, 1308, 1533
BmrFI CCNGG 4 cut(s) 227, 355, 457, 722
BmrI ACTGGG 1 cut(s) 95
BmuI ACTGGG 1 cut(s) 95
BplI GAGNNNNNCTC 2 cut(s) 1467, 1499
BpmI CTGGAG 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 1322
BpuMI CCSGG 1 cut(s) 722
Bsa29I ATCGAT 1 cut(s) 772
BsaAI YACGTR 1 cut(s) 630
BsaHI GRCGYC 1 cut(s) 400
BsaI GGTCTC 1 cut(s) 746
BsaJI CCNNGG 4 cut(s) 444, 450, 456, 1045
BsaWI WCCGGW 1 cut(s) 1027
Bsc4I CCNNNNNNNGG 3 cut(s) 391, 456, 728
Bse1I ACTGG 2 cut(s) 101, 963
BseBI CCWGG 3 cut(s) 227, 355, 457
BseCI ATCGAT 1 cut(s) 772
BseDI CCNNGG 4 cut(s) 444, 450, 456, 1045
BseLI CCNNNNNNNGG 3 cut(s) 391, 456, 728
BseMII CTCAG 2 cut(s) 89, 1382
BseNI ACTGG 2 cut(s) 101, 963
BseRI GAGGAG 4 cut(s) 110, 359, 1388, 1544
BseSI GKGCMC 1 cut(s) 1608
BseYI CCCAGC 1 cut(s) 109
BsgI GTGCAG 1 cut(s) 115
Bsh1285I CGRYCG 1 cut(s) 315
BshFI GGCC 9 cut(s) 259, 353, 449, 455, 578, 616, 969, 1062, 1451
BshNI GGYRCC 2 cut(s) 731, 1306
BshVI ATCGAT 1 cut(s) 772
BsiEI CGRYCG 1 cut(s) 315
BsiHKAI GWGCWC 1 cut(s) 1608
BsiHKCI CYCGRG 1 cut(s) 161
BsiSI CCGG 2 cut(s) 722, 1028
BslFI GGGAC 3 cut(s) 389, 408, 1611
BslI CCNNNNNNNGG 3 cut(s) 391, 456, 728
BsmAI GTCTC 3 cut(s) 322, 518, 746
BsmBI CGTCTC 1 cut(s) 322
BsmFI GGGAC 3 cut(s) 389, 408, 1611
BsnI GGCC 9 cut(s) 259, 353, 449, 455, 578, 616, 969, 1062, 1451
Bso31I GGTCTC 1 cut(s) 746
BsoBI CYCGRG 1 cut(s) 161
Bsp1286I GDGCHC 1 cut(s) 1608
Bsp1407I TGTACA 1 cut(s) 1760
Bsp143I GATC 6 cut(s) 3, 927, 1053, 1193, 1198, 1287
Bsp19I CCATGG 1 cut(s) 1045
BspACI CCGC 3 cut(s) 52, 256, 1418
BspANI GGCC 9 cut(s) 259, 353, 449, 455, 578, 616, 969, 1062, 1451
BspCNI CTCAG 2 cut(s) 88, 1383
BspDI ATCGAT 1 cut(s) 772
BspHI TCATGA 1 cut(s) 492
BspLI GGNNCC 4 cut(s) 733, 1200, 1308, 1533
BspPI GGATC 4 cut(s) 935, 1193, 1201, 1206
BspT107I GGYRCC 2 cut(s) 731, 1306
BspTNI GGTCTC 1 cut(s) 746
BsrGI TGTACA 1 cut(s) 1760
BsrI ACTGG 2 cut(s) 101, 963
BssECI CCNNGG 4 cut(s) 444, 450, 456, 1045
BssMI GATC 6 cut(s) 3, 927, 1053, 1193, 1198, 1287
BssNI GRCGYC 1 cut(s) 400
BssSI CACGAG 1 cut(s) 1453
BssT1I CCWWGG 3 cut(s) 444, 450, 1045
Bst2BI CACGAG 1 cut(s) 1453
Bst2UI CCWGG 3 cut(s) 227, 355, 457
Bst4CI ACNGT 4 cut(s) 239, 316, 779, 1610
Bst6I CTCTTC 2 cut(s) 53, 275
BstACI GRCGYC 1 cut(s) 400
BstAUI TGTACA 1 cut(s) 1760
BstBAI YACGTR 1 cut(s) 630
BstC8I GCNNGC 1 cut(s) 1501
BstDEI CTNAG 3 cut(s) 75, 561, 1391
BstDSI CCRYGG 1 cut(s) 1045
BstKTI GATC 6 cut(s) 6, 930, 1056, 1196, 1201, 1290
BstMAI GTCTC 3 cut(s) 322, 518, 746
BstMBI GATC 6 cut(s) 3, 927, 1053, 1193, 1198, 1287
BstMCI CGRYCG 1 cut(s) 315
BstMWI GCNNNNNNNGC 1 cut(s) 1138
BstNI CCWGG 3 cut(s) 227, 355, 457
BstNSI RCATGY 2 cut(s) 382, 1141
BstSCI CCNGG 4 cut(s) 225, 353, 455, 720
BstSLI GKGCMC 1 cut(s) 1608
BstSNI TACGTA 1 cut(s) 630
BstX2I RGATCY 1 cut(s) 1198
BstXI CCANNNNNNTGG 1 cut(s) 1276
BstYI RGATCY 1 cut(s) 1198
Bsu15I ATCGAT 1 cut(s) 772
BsuRI GGCC 9 cut(s) 259, 353, 449, 455, 578, 616, 969, 1062, 1451
BsuTUI ATCGAT 1 cut(s) 772
BtgI CCRYGG 1 cut(s) 1045
BtrI CACGTC 1 cut(s) 1623
BtsIMutI CAGTG 2 cut(s) 108, 956
Cac8I GCNNGC 1 cut(s) 1501
CciI TCATGA 1 cut(s) 492
Cfr13I GGNCC 3 cut(s) 258, 614, 1060
ClaI ATCGAT 1 cut(s) 772
CseI GACGC 1 cut(s) 408
Csp6I GTAC 4 cut(s) 631, 1481, 1573, 1761
CviQI GTAC 4 cut(s) 631, 1481, 1573, 1761
DdeI CTNAG 3 cut(s) 75, 561, 1391
DpnI GATC 6 cut(s) 5, 929, 1055, 1195, 1200, 1289
DpnII GATC 6 cut(s) 3, 927, 1053, 1193, 1198, 1287
DraI TTTAAA 1 cut(s) 438
EaeI YGGCCR 2 cut(s) 447, 1449
Eam1104I CTCTTC 2 cut(s) 53, 275
EarI CTCTTC 2 cut(s) 53, 275
EciI GGCGGA 1 cut(s) 1433
Eco105I TACGTA 1 cut(s) 630
Eco130I CCWWGG 3 cut(s) 444, 450, 1045
Eco31I GGTCTC 1 cut(s) 746
Eco57I CTGAAG 2 cut(s) 1536, 1538
Eco88I CYCGRG 1 cut(s) 161
EcoO109I RGGNCCY 1 cut(s) 1060
EcoRII CCWGG 3 cut(s) 225, 353, 455
EcoT14I CCWWGG 3 cut(s) 444, 450, 1045
ErhI CCWWGG 3 cut(s) 444, 450, 1045
Esp3I CGTCTC 1 cut(s) 322
FaqI GGGAC 3 cut(s) 389, 408, 1611
FbaI TGATCA 3 cut(s) 3, 1053, 1287
Fnu4HI GCNGC 1 cut(s) 257
Fsp4HI GCNGC 1 cut(s) 257
FspBI CTAG 3 cut(s) 978, 1259, 1311
GluI GCNGC 1 cut(s) 257
GsaI CCCAGC 1 cut(s) 113
GsuI CTGGAG 1 cut(s) 209
HaeIII GGCC 9 cut(s) 259, 353, 449, 455, 578, 616, 969, 1062, 1451
HapII CCGG 2 cut(s) 722, 1028
HgaI GACGC 1 cut(s) 408
Hin1I GRCGYC 1 cut(s) 400
HincII GTYRAC 2 cut(s) 72, 337
HindII GTYRAC 2 cut(s) 72, 337
HindIII AAGCTT 1 cut(s) 563
HinfI GANTC 6 cut(s) 68, 126, 164, 547, 605, 769
HpaII CCGG 2 cut(s) 722, 1028
HphI GGTGA 5 cut(s) 199, 421, 677, 791, 823
Hpy166II GTNNAC 6 cut(s) 72, 106, 337, 964, 1606, 1761
Hpy188I TCNGA 7 cut(s) 8, 78, 125, 801, 1198, 1431, 1557
Hpy188III TCNNGA 3 cut(s) 493, 763, 1636
Hpy8I GTNNAC 6 cut(s) 72, 106, 337, 964, 1606, 1761
Hpy99I CGWCG 1 cut(s) 402
HpyCH4III ACNGT 4 cut(s) 239, 316, 779, 1610
HpyCH4IV ACGT 4 cut(s) 339, 629, 1038, 1622
HpyCH4V TGCA 9 cut(s) 132, 234, 916, 1141, 1162, 1336, 1589, 1606, 1647
HpyF10VI GCNNNNNNNGC 1 cut(s) 1138
HpyF3I CTNAG 3 cut(s) 75, 561, 1391
HpySE526I ACGT 4 cut(s) 339, 629, 1038, 1622
Hsp92I GRCGYC 1 cut(s) 400
Ksp22I TGATCA 3 cut(s) 3, 1053, 1287
Kzo9I GATC 6 cut(s) 3, 927, 1053, 1193, 1198, 1287
LmnI GCTCC 3 cut(s) 372, 387, 1531
MaeI CTAG 3 cut(s) 978, 1259, 1311
MaeII ACGT 4 cut(s) 339, 629, 1038, 1622
MaeIII GTNAC 3 cut(s) 165, 625, 1254
MalI GATC 6 cut(s) 5, 929, 1055, 1195, 1200, 1289
MboI GATC 6 cut(s) 3, 927, 1053, 1193, 1198, 1287
MboII GAAGA 8 cut(s) 40, 211, 262, 265, 892, 1476, 1479, 1485
MflI RGATCY 1 cut(s) 1198
MhlI GDGCHC 1 cut(s) 1608
MlsI TGGCCA 2 cut(s) 449, 1451
MluCI AATT 6 cut(s) 298, 479, 694, 940, 1079, 1210
MluNI TGGCCA 2 cut(s) 449, 1451
MlyI GAGTC 5 cut(s) 77, 135, 173, 556, 614
MmeI TCCRAC 2 cut(s) 219, 226
Mox20I TGGCCA 2 cut(s) 449, 1451
MroXI GAANNNNTTC 1 cut(s) 483
MscI TGGCCA 2 cut(s) 449, 1451
MseI TTAA 7 cut(s) 437, 594, 1035, 1067, 1073, 1116, 1242
MslI CAYNNNNRTG 1 cut(s) 1611
Msp20I TGGCCA 2 cut(s) 449, 1451
MspI CCGG 2 cut(s) 722, 1028
MspR9I CCNGG 4 cut(s) 227, 355, 457, 722
MvaI CCWGG 3 cut(s) 227, 355, 457
MwoI GCNNNNNNNGC 1 cut(s) 1138
NciI CCSGG 1 cut(s) 722
NcoI CCATGG 1 cut(s) 1045
NdeII GATC 6 cut(s) 3, 927, 1053, 1193, 1198, 1287
NlaIV GGNNCC 4 cut(s) 733, 1200, 1308, 1533
NmuCI GTSAC 2 cut(s) 165, 1254
NspI RCATGY 2 cut(s) 382, 1141
PagI TCATGA 1 cut(s) 492
PcsI WCGNNNNNNNCGW 1 cut(s) 317
PdmI GAANNNNTTC 1 cut(s) 483
PfeI GAWTC 1 cut(s) 769
PflMI CCANNNNNTGG 1 cut(s) 391
PkrI GCNGC 1 cut(s) 258
PleI GAGTC 5 cut(s) 76, 134, 172, 555, 613
PpsI GAGTC 5 cut(s) 76, 134, 172, 555, 613
Ppu21I YACGTR 1 cut(s) 630
PsiI TTATAA 1 cut(s) 1323
Psp6I CCWGG 3 cut(s) 225, 353, 455
PspFI CCCAGC 1 cut(s) 109
PspGI CCWGG 3 cut(s) 225, 353, 455
PspN4I GGNNCC 4 cut(s) 733, 1200, 1308, 1533
PspPI GGNCC 3 cut(s) 258, 614, 1060
PsuI RGATCY 1 cut(s) 1198
RsaI GTAC 4 cut(s) 632, 1482, 1574, 1762
RsaNI GTAC 4 cut(s) 631, 1481, 1573, 1761
RseI CAYNNNNRTG 1 cut(s) 1611
SaqAI TTAA 7 cut(s) 437, 594, 1035, 1067, 1073, 1116, 1242
SatI GCNGC 1 cut(s) 257
Sau3AI GATC 6 cut(s) 3, 927, 1053, 1193, 1198, 1287
Sau96I GGNCC 3 cut(s) 258, 614, 1060
ScaI AGTACT 1 cut(s) 1482
SchI GAGTC 5 cut(s) 77, 135, 173, 556, 614
ScrFI CCNGG 4 cut(s) 227, 355, 457, 722
SduI GDGCHC 1 cut(s) 1608
SmiMI CAYNNNNRTG 1 cut(s) 1611
SmlI CTYRAG 1 cut(s) 1301
SmoI CTYRAG 1 cut(s) 1301
SnaBI TACGTA 1 cut(s) 630
Sse9I AATT 6 cut(s) 298, 479, 694, 940, 1079, 1210
SsiI CCGC 3 cut(s) 52, 256, 1418
SspI AATATT 1 cut(s) 1642
SspMI CTAG 3 cut(s) 978, 1259, 1311
StyD4I CCNGG 4 cut(s) 225, 353, 455, 720
StyI CCWWGG 3 cut(s) 444, 450, 1045
TaaI ACNGT 4 cut(s) 239, 316, 779, 1610
TaiI ACGT 4 cut(s) 342, 632, 1041, 1625
TaqI TCGA 5 cut(s) 608, 772, 906, 930, 1371
TasI AATT 6 cut(s) 298, 479, 694, 940, 1079, 1210
TatI WGTACW 3 cut(s) 1480, 1572, 1760
TauI GCSGC 1 cut(s) 259
TfiI GAWTC 1 cut(s) 769
Tru1I TTAA 7 cut(s) 437, 594, 1035, 1067, 1073, 1116, 1242
Tru9I TTAA 7 cut(s) 437, 594, 1035, 1067, 1073, 1116, 1242
TscAI CASTG 2 cut(s) 108, 963
TseFI GTSAC 2 cut(s) 165, 1254
Tsp45I GTSAC 2 cut(s) 165, 1254
TspRI CASTG 2 cut(s) 108, 963
Van91I CCANNNNNTGG 1 cut(s) 391
VneI GTGCAC 1 cut(s) 1604
XapI RAATTY 3 cut(s) 479, 694, 1210
XceI RCATGY 2 cut(s) 382, 1141
XcmI CCANNNNNNNNNTGG 1 cut(s) 1273
XmnI GAANNNNTTC 1 cut(s) 483
XspI CTAG 3 cut(s) 978, 1259, 1311
ZrmI AGTACT 1 cut(s) 1482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.