Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0015114

Physical Location & Seq

Genomic Coordinates Forward (+)

48664018 .. 48664686

Gene Structure 669 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0311200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGCTACATCGAGAAGCGCTGCGCTTGTTCTTGTGATAGCAACACTATTCGTGTTGGTAACTTGGCCTGATGCAGCAGCACGCGCCAATGGTCAAGTAGACAAAGTCATGGTAGAATGTCTTGATGCCTGCACTGACAATGTCCTGATGGCATGCATAGATATTTGCGACCCCAGATTTGCAGCTGAATGTCGGAAGAAATGCAGAGACAAACAAGCCAAGTGCGCAAACCGCTGCATGAACAATGAACCAGCTCCAAGATCCATTGCTGCAGCATGTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2

Protein Analysis

94

Amino Acids

10.12

Weight (kDa)

8.1

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0015114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26500
fragaria_vesca	FvH4_4g30220
malus_domestica	MD09G1267500.v1.1
prunus_persica	Prupe.1G285700_v2.0.a1
pyrus_communis	pycom09g18040
rosa_chinensis	RchiOBHm_Chr4g0438541
rosa_laevigata	RLG00000006353
rosa_multiflora	Rmu_sc0002327.1_g000006
rosa_roxburghii	Rroxscaffold_5G00379540
rosa_rugosa	Rorug04G0311200
rosa_samantha	Rh4AG361700 Rh4BG373000 Rh4CG387000 Rh4DG367700
rosa_wichuraiana	Rw0G006630 Rw0G016580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	226
AccI	GTMKAC	1 cut(s)	99
AccII	CGCG	1 cut(s)	84
AciI	CCGC	1 cut(s)	232
AclWI	GGATC	1 cut(s)	255
AfeI	AGCGCT	1 cut(s)	19
AluBI	AGCT	2 cut(s)	185, 254
AluI	AGCT	2 cut(s)	185, 254
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	1 cut(s)	255
Aor51HI	AGCGCT	1 cut(s)	19
AoxI	GGCC	1 cut(s)	65
ApeKI	GCWGC	7 cut(s)	20, 74, 77, 182, 234, 269, 272
ArsI	GACNNNNNNTTYG	2 cut(s)	161, 193
AspLEI	GCGC	4 cut(s)	20, 25, 86, 227
BbvI	GCAGC	6 cut(s)	7, 86, 89, 194, 221, 256
BccI	CCATC	1 cut(s)	142
BcoDI	GTCTC	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	270
BfoI	RGCGCY	1 cut(s)	21
BisI	GCNGC	7 cut(s)	21, 75, 78, 183, 235, 270, 273
BlsI	GCNGC	7 cut(s)	22, 76, 79, 184, 236, 271, 274
BmsI	GCATC	2 cut(s)	61, 115
Bse3DI	GCAATG	1 cut(s)	264
BseMI	GCAATG	1 cut(s)	264
BseXI	GCAGC	6 cut(s)	7, 86, 89, 194, 221, 256
BsgI	GTGCAG	1 cut(s)	115
Bsh1236I	CGCG	1 cut(s)	84
BshFI	GGCC	1 cut(s)	67
BsmAI	GTCTC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	260
BspACI	CCGC	1 cut(s)	232
BspANI	GGCC	1 cut(s)	67
BspFNI	CGCG	1 cut(s)	84
BspMAI	CTGCAG	1 cut(s)	274
BspPI	GGATC	1 cut(s)	255
BsrDI	GCAATG	1 cut(s)	264
BssMI	GATC	1 cut(s)	260
BstC8I	GCNNGC	3 cut(s)	82, 130, 154
BstFNI	CGCG	1 cut(s)	84
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	4 cut(s)	20, 25, 86, 227
BstKTI	GATC	1 cut(s)	263
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	260
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 224, 231
BstNSI	RCATGY	2 cut(s)	156, 279
BstSFI	CTRYAG	1 cut(s)	270
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	6 cut(s)	7, 86, 89, 194, 221, 256
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	3 cut(s)	82, 130, 154
CfoI	GCGC	4 cut(s)	20, 25, 86, 227
CviAII	CATG	5 cut(s)	109, 153, 238, 276, 282
CviJI	RGCY	5 cut(s)	5, 67, 185, 218, 254
CviKI_1	RGCY	5 cut(s)	5, 67, 185, 218, 254
DpnI	GATC	1 cut(s)	262
DpnII	GATC	1 cut(s)	260
Eco47III	AGCGCT	1 cut(s)	19
EcoT22I	ATGCAT	1 cut(s)	158
FaeI	CATG	5 cut(s)	112, 156, 241, 279, 285
FaiI	YATR	6 cut(s)	110, 154, 158, 239, 277, 283
FatI	CATG	5 cut(s)	108, 152, 237, 275, 281
FblI	GTMKAC	1 cut(s)	99
Fnu4HI	GCNGC	7 cut(s)	21, 75, 78, 183, 235, 270, 273
Fsp4HI	GCNGC	7 cut(s)	21, 75, 78, 183, 235, 270, 273
FspI	TGCGCA	1 cut(s)	226
GlaI	GCGC	4 cut(s)	19, 24, 85, 226
GluI	GCNGC	7 cut(s)	21, 75, 78, 183, 235, 270, 273
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	67
HhaI	GCGC	4 cut(s)	20, 25, 86, 227
Hin1II	CATG	5 cut(s)	112, 156, 241, 279, 285
Hin6I	GCGC	4 cut(s)	18, 23, 84, 225
HinP1I	GCGC	4 cut(s)	18, 23, 84, 225
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	3 cut(s)	12, 122, 145
Hpy8I	GTNNAC	1 cut(s)	100
HpyCH4V	TGCA	7 cut(s)	74, 132, 156, 182, 204, 237, 272
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 224, 231
Hsp92II	CATG	5 cut(s)	112, 156, 241, 279, 285
HspAI	GCGC	4 cut(s)	18, 23, 84, 225
Kzo9I	GATC	1 cut(s)	260
LmnI	GCTCC	1 cut(s)	259
LpnPI	CCDG	5 cut(s)	81, 142, 158, 187, 264
Lsp1109I	GCAGC	6 cut(s)	7, 86, 89, 194, 221, 256
LweI	GCATC	2 cut(s)	61, 115
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	1 cut(s)	262
MboI	GATC	1 cut(s)	260
MboII	GAAGA	1 cut(s)	208
MflI	RGATCY	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	173
Mph1103I	ATGCAT	1 cut(s)	158
MslI	CAYNNNNRTG	1 cut(s)	280
MspA1I	CMGCKG	2 cut(s)	185, 234
MteI	GCGCNGCGC	1 cut(s)	21
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	3 cut(s)	83, 224, 231
NdeII	GATC	1 cut(s)	260
NlaIII	CATG	5 cut(s)	112, 156, 241, 279, 285
NsbI	TGCGCA	1 cut(s)	226
NsiI	ATGCAT	1 cut(s)	158
NspI	RCATGY	2 cut(s)	156, 279
PaeI	GCATGC	1 cut(s)	156
PflFI	GACNNNGTC	2 cut(s)	104, 140
PkrI	GCNGC	7 cut(s)	22, 76, 79, 184, 236, 271, 274
PstI	CTGCAG	1 cut(s)	274
PsuI	RGATCY	1 cut(s)	260
PsyI	GACNNNGTC	2 cut(s)	104, 140
PvuII	CAGCTG	1 cut(s)	185
RseI	CAYNNNNRTG	1 cut(s)	280
SatI	GCNGC	7 cut(s)	21, 75, 78, 183, 235, 270, 273
Sau3AI	GATC	1 cut(s)	260
SetI	ASST	2 cut(s)	187, 256
SfaNI	GCATC	2 cut(s)	61, 115
SfcI	CTRYAG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	280
SphI	GCATGC	1 cut(s)	156
SsiI	CCGC	1 cut(s)	232
TaqI	TCGA	1 cut(s)	11
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	7 cut(s)	20, 74, 77, 182, 234, 269, 272
TspDTI	ATGAA	2 cut(s)	254, 261
TspRI	CASTG	1 cut(s)	139
Tth111I	GACNNNGTC	2 cut(s)	104, 140
XceI	RCATGY	2 cut(s)	156, 279
XmiI	GTMKAC	1 cut(s)	99
Zsp2I	ATGCAT	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.