Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0018288

Physical Location & Seq

Genomic Coordinates Forward (+)

9191503 .. 9192590

Gene Structure 1088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G26600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGACGATGACTCACCTGAATCGTCTGATCTTGATCTCTCTTCTCTTCGTCTCTTTACTTCTCAAATCCTCCACCGCTTCTTCAACCGTCGTCGACGAAGGAAACAGAACATCAAGAAACTTCCGTTACCGAACGCACCGATTCGTTCCGAGGTTTAACCACCACCCTTACCACGTGACTCCTCACCGTTCGTGTGATTCCTTCATTCGTCCTTACGCGCGTTCTATGTGCATTGAGCTTCAGAGAATCCACCGTAGCAGTCGGAAGCAGCCACTTCTTTCTCCTCCTCCTCCGGAGATTGATCCAAGGTACGGCGTCGACAAAAGACTCGTCCCCTCTGGTCCAAACCCGCTTCACAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007267 GO:0008150 GO:0009987 GO:0023052 GO:0030154 GO:0032502 GO:0033612 GO:0045165 GO:0045168 GO:0048046 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

13.97

Weight (kDa)

11.07

Isoelectric Point (pI)

61.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26600 AT1G26600 AT1G69320
fragaria_vesca	FvH4_4g30410
prunus_persica	Prupe.1G283100_v2.0.a1
pyrus_communis	pycom13g05750
rosa_chinensis	RchiOBHm_Chr4g0438701
rosa_laevigata	RLG00000006336
rosa_rugosa	Rorug04G0312700
rosa_wichuraiana	Rw0G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	93, 318
AccII	CGCG	2 cut(s)	218, 220
AccIII	TCCGGA	1 cut(s)	292
AciI	CCGC	2 cut(s)	75, 350
AclWI	GGATC	1 cut(s)	296
AcuI	CTGAAG	1 cut(s)	224
AcvI	CACGTG	1 cut(s)	175
AcyI	GRCGYC	1 cut(s)	315
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	1 cut(s)	311
AgsI	TTSAA	1 cut(s)	84
AluBI	AGCT	1 cut(s)	238
AluI	AGCT	1 cut(s)	238
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	1 cut(s)	296
Aor13HI	TCCGGA	1 cut(s)	292
ApeKI	GCWGC	1 cut(s)	268
ArsI	GACNNNNNNTTYG	2 cut(s)	315, 347
AspLEI	GCGC	1 cut(s)	220
AspS9I	GGNCC	1 cut(s)	341
AsuHPI	GGTGA	2 cut(s)	5, 176
AvaII	GGWCC	1 cut(s)	341
BbrPI	CACGTG	1 cut(s)	175
BbvI	GCAGC	1 cut(s)	280
BceAI	ACGGC	1 cut(s)	328
BcoDI	GTCTC	1 cut(s)	55
BisI	GCNGC	1 cut(s)	269
BlsI	GCNGC	1 cut(s)	270
Bme18I	GGWCC	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	341
BsaAI	YACGTR	1 cut(s)	175
BsaBI	GATNNNNATC	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	149, 305
BsaWI	WCCGGW	1 cut(s)	292
Bsc4I	CCNNNNNNNGG	1 cut(s)	311
Bse8I	GATNNNNATC	1 cut(s)	32
BseAI	TCCGGA	1 cut(s)	292
BseDI	CCNNGG	2 cut(s)	149, 305
BseJI	GATNNNNATC	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	311
BseRI	GAGGAG	4 cut(s)	171, 273, 276, 279
BseXI	GCAGC	1 cut(s)	280
Bsh1236I	CGCG	2 cut(s)	218, 220
BsiSI	CCGG	1 cut(s)	293
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	1 cut(s)	311
BsmAI	GTCTC	1 cut(s)	55
BsmBI	CGTCTC	1 cut(s)	55
BsmFI	GGGAC	1 cut(s)	317
Bsp13I	TCCGGA	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	27, 33, 301
BspACI	CCGC	2 cut(s)	75, 350
BspEI	TCCGGA	1 cut(s)	292
BspFNI	CGCG	2 cut(s)	218, 220
BspPI	GGATC	1 cut(s)	296
BssECI	CCNNGG	2 cut(s)	149, 305
BssMI	GATC	3 cut(s)	27, 33, 301
BssNI	GRCGYC	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	305
Bst4CI	ACNGT	3 cut(s)	88, 188, 254
Bst6I	CTCTTC	2 cut(s)	45, 50
BstACI	GRCGYC	1 cut(s)	315
BstBAI	YACGTR	1 cut(s)	175
BstFNI	CGCG	2 cut(s)	218, 220
BstHHI	GCGC	1 cut(s)	220
BstKTI	GATC	3 cut(s)	30, 36, 304
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	3 cut(s)	27, 33, 301
BstUI	CGCG	2 cut(s)	218, 220
BstV1I	GCAGC	1 cut(s)	280
CfoI	GCGC	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	341
CseI	GACGC	1 cut(s)	304
Csp6I	GTAC	1 cut(s)	310
CviJI	RGCY	2 cut(s)	238, 271
CviKI_1	RGCY	2 cut(s)	238, 271
CviQI	GTAC	1 cut(s)	310
DpnI	GATC	3 cut(s)	29, 35, 303
DpnII	GATC	3 cut(s)	27, 33, 301
Eam1104I	CTCTTC	2 cut(s)	45, 50
EarI	CTCTTC	2 cut(s)	45, 50
Eco130I	CCWWGG	1 cut(s)	305
Eco47I	GGWCC	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	224
Eco72I	CACGTG	1 cut(s)	175
EcoT14I	CCWWGG	1 cut(s)	305
ErhI	CCWWGG	1 cut(s)	305
Esp3I	CGTCTC	1 cut(s)	55
FaiI	YATR	1 cut(s)	227
FaqI	GGGAC	1 cut(s)	317
FauI	CCCGC	1 cut(s)	357
FblI	GTMKAC	2 cut(s)	93, 318
Fnu4HI	GCNGC	1 cut(s)	269
Fsp4HI	GCNGC	1 cut(s)	269
GlaI	GCGC	1 cut(s)	219
GluI	GCNGC	1 cut(s)	269
HapII	CCGG	1 cut(s)	293
HgaI	GACGC	1 cut(s)	304
HhaI	GCGC	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	315
Hin6I	GCGC	1 cut(s)	218
HinP1I	GCGC	1 cut(s)	218
HincII	GTYRAC	2 cut(s)	94, 319
HindII	GTYRAC	2 cut(s)	94, 319
HinfI	GANTC	7 cut(s)	10, 19, 141, 178, 197, 246, 327
HpaII	CCGG	1 cut(s)	293
HphI	GGTGA	2 cut(s)	5, 176
Hpy166II	GTNNAC	2 cut(s)	94, 319
Hpy188I	TCNGA	4 cut(s)	27, 150, 243, 264
Hpy188III	TCNNGA	3 cut(s)	31, 114, 293
Hpy8I	GTNNAC	2 cut(s)	94, 319
Hpy99I	CGWCG	4 cut(s)	92, 95, 98, 320
HpyAV	CCTTC	2 cut(s)	92, 211
HpyCH4III	ACNGT	3 cut(s)	88, 188, 254
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	315
HspAI	GCGC	1 cut(s)	218
Kpn2I	TCCGGA	1 cut(s)	292
Kzo9I	GATC	3 cut(s)	27, 33, 301
LpnPI	CCDG	3 cut(s)	29, 306, 324
Lsp1109I	GCAGC	1 cut(s)	280
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	125, 175
MalI	GATC	3 cut(s)	29, 35, 303
MboI	GATC	3 cut(s)	27, 33, 301
MboII	GAAGA	3 cut(s)	32, 37, 72
MlyI	GAGTC	3 cut(s)	4, 172, 321
MmeI	TCCRAC	1 cut(s)	242
MnlI	CCTC	7 cut(s)	79, 144, 192, 294, 297, 300, 346
MroI	TCCGGA	1 cut(s)	292
MseI	TTAA	1 cut(s)	156
MspI	CCGG	1 cut(s)	293
MvnI	CGCG	2 cut(s)	218, 220
NdeII	GATC	3 cut(s)	27, 33, 301
NmuCI	GTSAC	1 cut(s)	175
PfeI	GAWTC	4 cut(s)	19, 141, 197, 246
PkrI	GCNGC	1 cut(s)	270
PleI	GAGTC	3 cut(s)	4, 172, 321
PmaCI	CACGTG	1 cut(s)	175
PmlI	CACGTG	1 cut(s)	175
PpsI	GAGTC	3 cut(s)	4, 172, 321
Ppu21I	YACGTR	1 cut(s)	175
PspCI	CACGTG	1 cut(s)	175
PspPI	GGNCC	1 cut(s)	341
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SalI	GTCGAC	2 cut(s)	92, 317
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	1 cut(s)	269
Sau3AI	GATC	3 cut(s)	27, 33, 301
Sau96I	GGNCC	1 cut(s)	341
SchI	GAGTC	3 cut(s)	4, 172, 321
SetI	ASST	5 cut(s)	18, 155, 177, 240, 311
SgrDI	CGTCGACG	1 cut(s)	92
SinI	GGWCC	1 cut(s)	341
SsiI	CCGC	2 cut(s)	75, 350
StyI	CCWWGG	1 cut(s)	305
TaaI	ACNGT	3 cut(s)	88, 188, 254
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	2 cut(s)	93, 318
TfiI	GAWTC	4 cut(s)	19, 141, 197, 246
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	268
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	193
TspGWI	ACGGA	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	341
XmiI	GTMKAC	2 cut(s)	93, 318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.