RchiOBHm_Chr4g0438701

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0018288
Physical Location & Seq
Forward (+)
61330822 .. 61331916
1095 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40682

Sequence Viewer

Length: 345 bp
ATGAAGAGCGCTCTCTCTTCTTCTTCTTCTTCTTCTTCTTCTCCTTCAAGAAAGATTCTGGTGGCGTCAGCGTTGGCGACGGTGGTCCTCTTACAGCTCCTTCTGCCTACATGTGCTACCGGAGTCGGCGTCGTAACAAGCAACTCCGGGCAACAAACCCACCGCCATCACAGTTGCGACGCAATTTCACGGTCGAGCCCCAAACTACGTTCTTTGTGCATTCATTTCCAGTCAACCCAACACCTTCCGACGCCGCCGCCGTCTCCGTCCGATTATCAGATTGATCCAAGATACGGTGTCGAGAAGAGACGGGTCCCTTCCGGACCAAACCCTCTTCACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007267 GO:0008150 GO:0009987 GO:0023052 GO:0030154 GO:0032502 GO:0033612 GO:0045165 GO:0045168 GO:0048046 GO:0048869
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.14

Weight (kDa)

10.05

Isoelectric Point (pI)

84.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26600 AT1G26600 AT1G69320
fragaria_vesca FvH4_4g30410
prunus_persica Prupe.1G283100_v2.0.a1
pyrus_communis pycom13g05750
rosa_chinensis RchiOBHm_Chr4g0438701
rosa_laevigata RLG00000006336
rosa_rugosa Rorug04G0312700
rosa_wichuraiana Rw0G016720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 320
AciI CCGC 3 cut(s) 163, 254, 257
AclWI GGATC 1 cut(s) 278
AcyI GRCGYC 3 cut(s) 65, 129, 251
AfeI AGCGCT 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 293
AflIII ACRYGT 1 cut(s) 110
AgsI TTSAA 1 cut(s) 48
AluBI AGCT 1 cut(s) 97
AluI AGCT 1 cut(s) 97
Alw26I GTCTC 2 cut(s) 267, 301
AlwI GGATC 1 cut(s) 278
Aor13HI TCCGGA 1 cut(s) 320
Aor51HI AGCGCT 1 cut(s) 10
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 3 cut(s) 85, 313, 323
AsuC2I CCSGG 1 cut(s) 148
AvaII GGWCC 3 cut(s) 85, 313, 323
BanII GRGCYC 1 cut(s) 200
BccI CCATC 1 cut(s) 174
BceAI ACGGC 1 cut(s) 244
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 267, 301
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 2 cut(s) 254, 257
BlsI GCNGC 2 cut(s) 255, 258
Bme1390I CCNGG 1 cut(s) 148
Bme18I GGWCC 3 cut(s) 85, 313, 323
BmgT120I GGNCC 3 cut(s) 85, 313, 323
BmiI GGNNCC 2 cut(s) 314, 315
BmrFI CCNGG 1 cut(s) 148
BoxI GACNNNNGTC 1 cut(s) 83
BpuMI CCSGG 1 cut(s) 148
BsaHI GRCGYC 3 cut(s) 65, 129, 251
BsaWI WCCGGW 2 cut(s) 119, 320
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 229
BseAI TCCGGA 1 cut(s) 320
BseLI CCNNNNNNNGG 1 cut(s) 293
BseNI ACTGG 1 cut(s) 229
Bsh1285I CGRYCG 1 cut(s) 194
BsiEI CGRYCG 1 cut(s) 194
BsiSI CCGG 3 cut(s) 120, 147, 321
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 2 cut(s) 267, 301
BsmBI CGTCTC 2 cut(s) 267, 301
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 200
Bsp13I TCCGGA 1 cut(s) 320
Bsp143I GATC 1 cut(s) 283
BspACI CCGC 3 cut(s) 163, 254, 257
BspEI TCCGGA 1 cut(s) 320
BspLI GGNNCC 2 cut(s) 314, 315
BspPI GGATC 1 cut(s) 278
BsrI ACTGG 1 cut(s) 229
BssMI GATC 1 cut(s) 283
BssNI GRCGYC 3 cut(s) 65, 129, 251
Bst4CI ACNGT 4 cut(s) 82, 173, 192, 296
Bst6I CTCTTC 3 cut(s) 22, 299, 339
BstACI GRCGYC 3 cut(s) 65, 129, 251
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 1 cut(s) 286
BstMAI GTCTC 2 cut(s) 267, 301
BstMBI GATC 1 cut(s) 283
BstMCI CGRYCG 1 cut(s) 194
BstMWI GCNNNNNNNGC 1 cut(s) 103
BstNSI RCATGY 1 cut(s) 114
BstPAI GACNNNNGTC 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 146
CfoI GCGC 1 cut(s) 11
Cfr13I GGNCC 3 cut(s) 85, 313, 323
CseI GACGC 4 cut(s) 54, 118, 188, 259
CviAII CATG 1 cut(s) 111
CviJI RGCY 2 cut(s) 97, 198
CviKI_1 RGCY 2 cut(s) 97, 198
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
Eam1104I CTCTTC 3 cut(s) 22, 299, 339
EarI CTCTTC 3 cut(s) 22, 299, 339
Eco24I GRGCYC 1 cut(s) 200
Eco47I GGWCC 3 cut(s) 85, 313, 323
Eco47III AGCGCT 1 cut(s) 10
EcoO109I RGGNCCY 1 cut(s) 313
EcoT38I GRGCYC 1 cut(s) 200
Esp3I CGTCTC 2 cut(s) 267, 301
FaeI CATG 1 cut(s) 114
FaiI YATR 1 cut(s) 112
FaqI GGGAC 1 cut(s) 299
FatI CATG 1 cut(s) 110
Fnu4HI GCNGC 2 cut(s) 254, 257
FriOI GRGCYC 1 cut(s) 200
Fsp4HI GCNGC 2 cut(s) 254, 257
GlaI GCGC 1 cut(s) 10
GluI GCNGC 2 cut(s) 254, 257
HaeII RGCGCY 1 cut(s) 12
HapII CCGG 3 cut(s) 120, 147, 321
HgaI GACGC 4 cut(s) 54, 118, 188, 259
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 3 cut(s) 65, 129, 251
Hin1II CATG 1 cut(s) 114
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HinfI GANTC 2 cut(s) 55, 123
HpaII CCGG 3 cut(s) 120, 147, 321
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 3 cut(s) 249, 271, 279
Hpy188III TCNNGA 3 cut(s) 48, 301, 321
Hpy8I GTNNAC 1 cut(s) 234
Hpy99I CGWCG 4 cut(s) 82, 134, 182, 253
HpyAV CCTTC 4 cut(s) 54, 110, 254, 327
HpyCH4III ACNGT 4 cut(s) 82, 173, 192, 296
HpyCH4IV ACGT 1 cut(s) 208
HpyCH4V TGCA 1 cut(s) 219
HpyF10VI GCNNNNNNNGC 1 cut(s) 103
HpySE526I ACGT 1 cut(s) 208
Hsp92I GRCGYC 3 cut(s) 65, 129, 251
Hsp92II CATG 1 cut(s) 114
HspAI GCGC 1 cut(s) 9
KflI GGGWCCC 1 cut(s) 313
Kpn2I TCCGGA 1 cut(s) 320
Kzo9I GATC 1 cut(s) 283
LmnI GCTCC 1 cut(s) 102
LpnPI CCDG 5 cut(s) 44, 133, 160, 242, 334
MaeII ACGT 1 cut(s) 208
MaeIII GTNAC 1 cut(s) 133
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MhlI GDGCHC 1 cut(s) 200
MluCI AATT 1 cut(s) 183
MlyI GAGTC 1 cut(s) 132
MmeI TCCRAC 1 cut(s) 272
MnlI CCTC 2 cut(s) 98, 342
MroI TCCGGA 1 cut(s) 320
MspI CCGG 3 cut(s) 120, 147, 321
MspR9I CCNGG 1 cut(s) 148
Mva1269I GAATGC 1 cut(s) 219
MwoI GCNNNNNNNGC 1 cut(s) 103
NciI CCSGG 1 cut(s) 148
NdeII GATC 1 cut(s) 283
NlaIII CATG 1 cut(s) 114
NlaIV GGNNCC 2 cut(s) 314, 315
NspI RCATGY 1 cut(s) 114
PciI ACATGT 1 cut(s) 110
PcsI WCGNNNNNNNCGW 1 cut(s) 257
PctI GAATGC 1 cut(s) 219
PfeI GAWTC 1 cut(s) 55
PkrI GCNGC 2 cut(s) 255, 258
PleI GAGTC 1 cut(s) 131
PpsI GAGTC 1 cut(s) 131
PpuMI RGGWCCY 1 cut(s) 313
PscI ACATGT 1 cut(s) 110
PshAI GACNNNNGTC 1 cut(s) 83
Psp5II RGGWCCY 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 314, 315
PspPI GGNCC 3 cut(s) 85, 313, 323
PspPPI RGGWCCY 1 cut(s) 313
SatI GCNGC 2 cut(s) 254, 257
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 3 cut(s) 85, 313, 323
SchI GAGTC 1 cut(s) 132
ScrFI CCNGG 1 cut(s) 148
SduI GDGCHC 1 cut(s) 200
SetI ASST 3 cut(s) 99, 211, 246
SinI GGWCC 3 cut(s) 85, 313, 323
Sse9I AATT 1 cut(s) 183
SsiI CCGC 3 cut(s) 163, 254, 257
StyD4I CCNGG 1 cut(s) 146
TaaI ACNGT 4 cut(s) 82, 173, 192, 296
TaiI ACGT 1 cut(s) 211
TaqI TCGA 2 cut(s) 194, 300
TasI AATT 1 cut(s) 183
TauI GCSGC 2 cut(s) 256, 259
TfiI GAWTC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 17, 212
TspGWI ACGGA 1 cut(s) 255
VpaK11BI GGWCC 3 cut(s) 85, 313, 323
XceI RCATGY 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.