RLG00000006336

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0018288
Physical Location & Seq
Reverse (-)
6333977 .. 6334409
433 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006336

Sequence Viewer

Length: 351 bp
ATGAAGAGCGCTCTCTCTTCTTCTCCTTCTTCTTCTTCGTCGTCTTCTTCTTCAAGAAAGCTTCTGGTGGCGTCAGCGTTGGCGACGGTGGTCCTCTTACAGCTCCTTCTGCCTACATGTGCTACCGGAGTCGGAGTCGAACCAAGCAACTCCGGGCAACAAACCCACCGCCATCACAGTTGCGACGCAATTTCACGGTCGAGCAACAAACTACGTTCTTTGTGCATTCATCTCCAGTTAACCCAACACCTTCCGACGCCGCCGCCGTCTCCGTCCGATTATCAGATTGATCCAAGATACGGTGTCGAGAAGAGAAGGGTCCCTTCCGGACCAAACCCTCTTCACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007267 GO:0008150 GO:0009987 GO:0023052 GO:0030154 GO:0032502 GO:0033612 GO:0045165 GO:0045168 GO:0048046 GO:0048869
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.35

Weight (kDa)

9.81

Isoelectric Point (pI)

87.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26600 AT1G26600 AT1G69320
fragaria_vesca FvH4_4g30410
prunus_persica Prupe.1G283100_v2.0.a1
pyrus_communis pycom13g05750
rosa_chinensis RchiOBHm_Chr4g0438701
rosa_laevigata RLG00000006336
rosa_rugosa Rorug04G0312700
rosa_wichuraiana Rw0G016720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 326
AciI CCGC 3 cut(s) 169, 260, 263
AclWI GGATC 1 cut(s) 284
AcyI GRCGYC 2 cut(s) 71, 257
AfeI AGCGCT 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 299
AflIII ACRYGT 1 cut(s) 116
AgsI TTSAA 1 cut(s) 54
AluBI AGCT 2 cut(s) 61, 103
AluI AGCT 2 cut(s) 61, 103
Alw26I GTCTC 1 cut(s) 273
AlwI GGATC 1 cut(s) 284
Aor13HI TCCGGA 1 cut(s) 326
Aor51HI AGCGCT 1 cut(s) 10
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 3 cut(s) 91, 319, 329
AsuC2I CCSGG 1 cut(s) 154
AvaII GGWCC 3 cut(s) 91, 319, 329
BbsI GAAGAC 1 cut(s) 36
BccI CCATC 1 cut(s) 180
BceAI ACGGC 1 cut(s) 250
BcnI CCSGG 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 273
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 2 cut(s) 260, 263
BlsI GCNGC 2 cut(s) 261, 264
Bme1390I CCNGG 1 cut(s) 154
Bme18I GGWCC 3 cut(s) 91, 319, 329
BmgT120I GGNCC 3 cut(s) 91, 319, 329
BmiI GGNNCC 2 cut(s) 320, 321
BmrFI CCNGG 1 cut(s) 154
BoxI GACNNNNGTC 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 36
BpmI CTGGAG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 154
BsaHI GRCGYC 2 cut(s) 71, 257
BsaWI WCCGGW 2 cut(s) 125, 326
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 1 cut(s) 299
Bse1I ACTGG 1 cut(s) 235
BseAI TCCGGA 1 cut(s) 326
BseLI CCNNNNNNNGG 1 cut(s) 299
BseNI ACTGG 1 cut(s) 235
Bsh1285I CGRYCG 1 cut(s) 200
BsiEI CGRYCG 1 cut(s) 200
BsiSI CCGG 3 cut(s) 126, 153, 327
BslFI GGGAC 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 299
BsmAI GTCTC 1 cut(s) 273
BsmBI CGTCTC 1 cut(s) 273
BsmFI GGGAC 1 cut(s) 305
BsmI GAATGC 1 cut(s) 225
Bsp13I TCCGGA 1 cut(s) 326
Bsp143I GATC 1 cut(s) 289
BspACI CCGC 3 cut(s) 169, 260, 263
BspEI TCCGGA 1 cut(s) 326
BspLI GGNNCC 2 cut(s) 320, 321
BspPI GGATC 1 cut(s) 284
BsrI ACTGG 1 cut(s) 235
BssMI GATC 1 cut(s) 289
BssNI GRCGYC 2 cut(s) 71, 257
Bst4CI ACNGT 4 cut(s) 88, 179, 198, 302
Bst6I CTCTTC 3 cut(s) 22, 305, 345
BstACI GRCGYC 2 cut(s) 71, 257
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 1 cut(s) 289
BstMCI CGRYCG 1 cut(s) 200
BstMWI GCNNNNNNNGC 1 cut(s) 109
BstNSI RCATGY 1 cut(s) 120
BstPAI GACNNNNGTC 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 152
BstV2I GAAGAC 1 cut(s) 36
CfoI GCGC 1 cut(s) 11
Cfr13I GGNCC 3 cut(s) 91, 319, 329
CseI GACGC 3 cut(s) 60, 194, 265
CviAII CATG 1 cut(s) 117
CviJI RGCY 2 cut(s) 61, 103
CviKI_1 RGCY 2 cut(s) 61, 103
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
Eam1104I CTCTTC 3 cut(s) 22, 305, 345
EarI CTCTTC 3 cut(s) 22, 305, 345
Eco47I GGWCC 3 cut(s) 91, 319, 329
Eco47III AGCGCT 1 cut(s) 10
EcoO109I RGGNCCY 1 cut(s) 319
Esp3I CGTCTC 1 cut(s) 273
FaeI CATG 1 cut(s) 120
FaiI YATR 1 cut(s) 118
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FaqI GGGAC 1 cut(s) 305
FatI CATG 1 cut(s) 116
Fnu4HI GCNGC 2 cut(s) 260, 263
Fsp4HI GCNGC 2 cut(s) 260, 263
GlaI GCGC 1 cut(s) 10
GluI GCNGC 2 cut(s) 260, 263
GsuI CTGGAG 1 cut(s) 218
HaeII RGCGCY 1 cut(s) 12
HapII CCGG 3 cut(s) 126, 153, 327
HgaI GACGC 3 cut(s) 60, 194, 265
HhaI GCGC 1 cut(s) 11
Hin1I GRCGYC 2 cut(s) 71, 257
Hin1II CATG 1 cut(s) 120
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HincII GTYRAC 1 cut(s) 240
HindII GTYRAC 1 cut(s) 240
HindIII AAGCTT 1 cut(s) 59
HinfI GANTC 2 cut(s) 129, 135
HpaI GTTAAC 1 cut(s) 240
HpaII CCGG 3 cut(s) 126, 153, 327
Hpy166II GTNNAC 1 cut(s) 240
Hpy188I TCNGA 4 cut(s) 134, 255, 277, 285
Hpy188III TCNNGA 3 cut(s) 54, 307, 327
Hpy8I GTNNAC 1 cut(s) 240
Hpy99I CGWCG 4 cut(s) 43, 88, 188, 259
HpyAV CCTTC 5 cut(s) 36, 116, 260, 309, 333
HpyCH4III ACNGT 4 cut(s) 88, 179, 198, 302
HpyCH4IV ACGT 1 cut(s) 214
HpyCH4V TGCA 1 cut(s) 225
HpyF10VI GCNNNNNNNGC 1 cut(s) 109
HpySE526I ACGT 1 cut(s) 214
Hsp92I GRCGYC 2 cut(s) 71, 257
Hsp92II CATG 1 cut(s) 120
HspAI GCGC 1 cut(s) 9
KflI GGGWCCC 1 cut(s) 319
Kpn2I TCCGGA 1 cut(s) 326
KspAI GTTAAC 1 cut(s) 240
Kzo9I GATC 1 cut(s) 289
LmnI GCTCC 1 cut(s) 108
LpnPI CCDG 5 cut(s) 50, 139, 166, 248, 340
MaeII ACGT 1 cut(s) 214
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MluCI AATT 1 cut(s) 189
MlyI GAGTC 2 cut(s) 138, 144
MmeI TCCRAC 2 cut(s) 112, 278
MnlI CCTC 2 cut(s) 104, 348
MroI TCCGGA 1 cut(s) 326
MseI TTAA 1 cut(s) 239
MspI CCGG 3 cut(s) 126, 153, 327
MspR9I CCNGG 1 cut(s) 154
Mva1269I GAATGC 1 cut(s) 225
MwoI GCNNNNNNNGC 1 cut(s) 109
NciI CCSGG 1 cut(s) 154
NdeII GATC 1 cut(s) 289
NlaIII CATG 1 cut(s) 120
NlaIV GGNNCC 2 cut(s) 320, 321
NspI RCATGY 1 cut(s) 120
PciI ACATGT 1 cut(s) 116
PcsI WCGNNNNNNNCGW 1 cut(s) 263
PctI GAATGC 1 cut(s) 225
PkrI GCNGC 2 cut(s) 261, 264
PleI GAGTC 2 cut(s) 137, 143
PpsI GAGTC 2 cut(s) 137, 143
PpuMI RGGWCCY 1 cut(s) 319
PscI ACATGT 1 cut(s) 116
PshAI GACNNNNGTC 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 319
PspN4I GGNNCC 2 cut(s) 320, 321
PspPI GGNCC 3 cut(s) 91, 319, 329
PspPPI RGGWCCY 1 cut(s) 319
SaqAI TTAA 1 cut(s) 239
SatI GCNGC 2 cut(s) 260, 263
Sau3AI GATC 1 cut(s) 289
Sau96I GGNCC 3 cut(s) 91, 319, 329
SchI GAGTC 2 cut(s) 138, 144
ScrFI CCNGG 1 cut(s) 154
SetI ASST 4 cut(s) 63, 105, 217, 252
SinI GGWCC 3 cut(s) 91, 319, 329
Sse9I AATT 1 cut(s) 189
SsiI CCGC 3 cut(s) 169, 260, 263
StyD4I CCNGG 1 cut(s) 152
TaaI ACNGT 4 cut(s) 88, 179, 198, 302
TaiI ACGT 1 cut(s) 217
TaqI TCGA 3 cut(s) 138, 200, 306
TasI AATT 1 cut(s) 189
TauI GCSGC 2 cut(s) 262, 265
Tru1I TTAA 1 cut(s) 239
Tru9I TTAA 1 cut(s) 239
TspDTI ATGAA 2 cut(s) 17, 218
TspGWI ACGGA 1 cut(s) 261
VpaK11BI GGWCC 3 cut(s) 91, 319, 329
XceI RCATGY 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.