Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00751

Orthogroup ID

OG0018288

Physical Location & Seq

Genomic Coordinates Forward (+)

482790 .. 483125

Gene Structure 336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G016720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGAAGAGCGCTCTCTCTTCTTCTTCTTCTTCTTCTTCAAGAAAGATTCTGGTGGCGTCAGCGTTGGCGACGGTGGTCCTCTTACAGCTCCTTCTGCCTACATGTGCTACCGGAGTCGGCGTCGTAACAAGCAACTCCGGGCAACAAACCCACCGCCATCACAGTTGCGACGCAATTTCACGGTCGAGCCACAAACTACGTTCTTTGTGCATTCATTTCCAGTCAACCCAACACCTTCCGACGCCGCCGCCGTCTCCGTCCGATTATCAGATTGATCCAAGATACGGTGTCGAGAAGAGACGGGTCCCTTCCGGACCAAACCCTCTTCACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0007154 GO:0007267 GO:0008150 GO:0009987 GO:0023052 GO:0030154 GO:0032502 GO:0033612 GO:0045165 GO:0045168 GO:0048046 GO:0048869

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

111

Amino Acids

11.91

Weight (kDa)

10.05

Isoelectric Point (pI)

77.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018288)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26600 AT1G26600 AT1G69320
fragaria_vesca	FvH4_4g30410
prunus_persica	Prupe.1G283100_v2.0.a1
pyrus_communis	pycom13g05750
rosa_chinensis	RchiOBHm_Chr4g0438701
rosa_laevigata	RLG00000006336
rosa_rugosa	Rorug04G0312700
rosa_wichuraiana	Rw0G016720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	311
AciI	CCGC	3 cut(s)	154, 245, 248
AclWI	GGATC	1 cut(s)	269
AcyI	GRCGYC	3 cut(s)	56, 120, 242
AfeI	AGCGCT	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	284
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	1 cut(s)	39
AluBI	AGCT	1 cut(s)	88
AluI	AGCT	1 cut(s)	88
Alw26I	GTCTC	2 cut(s)	258, 292
AlwI	GGATC	1 cut(s)	269
Aor13HI	TCCGGA	1 cut(s)	311
Aor51HI	AGCGCT	1 cut(s)	10
AspLEI	GCGC	1 cut(s)	11
AspS9I	GGNCC	3 cut(s)	76, 304, 314
AsuC2I	CCSGG	1 cut(s)	139
AvaII	GGWCC	3 cut(s)	76, 304, 314
BccI	CCATC	1 cut(s)	165
BceAI	ACGGC	1 cut(s)	235
BcnI	CCSGG	1 cut(s)	139
BcoDI	GTCTC	2 cut(s)	258, 292
BfoI	RGCGCY	1 cut(s)	12
BisI	GCNGC	2 cut(s)	245, 248
BlsI	GCNGC	2 cut(s)	246, 249
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	3 cut(s)	76, 304, 314
BmgT120I	GGNCC	3 cut(s)	76, 304, 314
BmiI	GGNNCC	2 cut(s)	305, 306
BmrFI	CCNGG	1 cut(s)	139
BoxI	GACNNNNGTC	1 cut(s)	74
BpuMI	CCSGG	1 cut(s)	139
BsaHI	GRCGYC	3 cut(s)	56, 120, 242
BsaWI	WCCGGW	2 cut(s)	110, 311
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	284
Bse1I	ACTGG	1 cut(s)	220
BseAI	TCCGGA	1 cut(s)	311
BseLI	CCNNNNNNNGG	1 cut(s)	284
BseNI	ACTGG	1 cut(s)	220
Bsh1285I	CGRYCG	1 cut(s)	185
BsiEI	CGRYCG	1 cut(s)	185
BsiSI	CCGG	3 cut(s)	111, 138, 312
BslFI	GGGAC	1 cut(s)	290
BslI	CCNNNNNNNGG	1 cut(s)	284
BsmAI	GTCTC	2 cut(s)	258, 292
BsmBI	CGTCTC	2 cut(s)	258, 292
BsmFI	GGGAC	1 cut(s)	290
BsmI	GAATGC	1 cut(s)	210
Bsp13I	TCCGGA	1 cut(s)	311
Bsp143I	GATC	1 cut(s)	274
BspACI	CCGC	3 cut(s)	154, 245, 248
BspEI	TCCGGA	1 cut(s)	311
BspLI	GGNNCC	2 cut(s)	305, 306
BspPI	GGATC	1 cut(s)	269
BsrI	ACTGG	1 cut(s)	220
BssMI	GATC	1 cut(s)	274
BssNI	GRCGYC	3 cut(s)	56, 120, 242
Bst4CI	ACNGT	4 cut(s)	73, 164, 183, 287
Bst6I	CTCTTC	3 cut(s)	22, 290, 330
BstACI	GRCGYC	3 cut(s)	56, 120, 242
BstH2I	RGCGCY	1 cut(s)	12
BstHHI	GCGC	1 cut(s)	11
BstKTI	GATC	1 cut(s)	277
BstMAI	GTCTC	2 cut(s)	258, 292
BstMBI	GATC	1 cut(s)	274
BstMCI	CGRYCG	1 cut(s)	185
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNSI	RCATGY	1 cut(s)	105
BstPAI	GACNNNNGTC	1 cut(s)	74
BstSCI	CCNGG	1 cut(s)	137
CfoI	GCGC	1 cut(s)	11
Cfr13I	GGNCC	3 cut(s)	76, 304, 314
CseI	GACGC	4 cut(s)	45, 109, 179, 250
CviAII	CATG	1 cut(s)	102
CviJI	RGCY	2 cut(s)	88, 189
CviKI_1	RGCY	2 cut(s)	88, 189
DpnI	GATC	1 cut(s)	276
DpnII	GATC	1 cut(s)	274
Eam1104I	CTCTTC	3 cut(s)	22, 290, 330
EarI	CTCTTC	3 cut(s)	22, 290, 330
Eco47I	GGWCC	3 cut(s)	76, 304, 314
Eco47III	AGCGCT	1 cut(s)	10
EcoO109I	RGGNCCY	1 cut(s)	304
Esp3I	CGTCTC	2 cut(s)	258, 292
FaeI	CATG	1 cut(s)	105
FaiI	YATR	1 cut(s)	103
FaqI	GGGAC	1 cut(s)	290
FatI	CATG	1 cut(s)	101
Fnu4HI	GCNGC	2 cut(s)	245, 248
Fsp4HI	GCNGC	2 cut(s)	245, 248
GlaI	GCGC	1 cut(s)	10
GluI	GCNGC	2 cut(s)	245, 248
HaeII	RGCGCY	1 cut(s)	12
HapII	CCGG	3 cut(s)	111, 138, 312
HgaI	GACGC	4 cut(s)	45, 109, 179, 250
HhaI	GCGC	1 cut(s)	11
Hin1I	GRCGYC	3 cut(s)	56, 120, 242
Hin1II	CATG	1 cut(s)	105
Hin6I	GCGC	1 cut(s)	9
HinP1I	GCGC	1 cut(s)	9
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	2 cut(s)	46, 114
HpaII	CCGG	3 cut(s)	111, 138, 312
Hpy166II	GTNNAC	1 cut(s)	225
Hpy188I	TCNGA	3 cut(s)	240, 262, 270
Hpy188III	TCNNGA	3 cut(s)	39, 292, 312
Hpy8I	GTNNAC	1 cut(s)	225
Hpy99I	CGWCG	4 cut(s)	73, 125, 173, 244
HpyAV	CCTTC	3 cut(s)	101, 245, 318
HpyCH4III	ACNGT	4 cut(s)	73, 164, 183, 287
HpyCH4IV	ACGT	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpySE526I	ACGT	1 cut(s)	199
Hsp92I	GRCGYC	3 cut(s)	56, 120, 242
Hsp92II	CATG	1 cut(s)	105
HspAI	GCGC	1 cut(s)	9
KflI	GGGWCCC	1 cut(s)	304
Kpn2I	TCCGGA	1 cut(s)	311
Kzo9I	GATC	1 cut(s)	274
LmnI	GCTCC	1 cut(s)	93
LpnPI	CCDG	5 cut(s)	35, 124, 151, 233, 325
MaeII	ACGT	1 cut(s)	199
MaeIII	GTNAC	1 cut(s)	124
MalI	GATC	1 cut(s)	276
MboI	GATC	1 cut(s)	274
MluCI	AATT	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	263
MnlI	CCTC	2 cut(s)	89, 333
MroI	TCCGGA	1 cut(s)	311
MspI	CCGG	3 cut(s)	111, 138, 312
MspR9I	CCNGG	1 cut(s)	139
Mva1269I	GAATGC	1 cut(s)	210
MwoI	GCNNNNNNNGC	1 cut(s)	94
NciI	CCSGG	1 cut(s)	139
NdeII	GATC	1 cut(s)	274
NlaIII	CATG	1 cut(s)	105
NlaIV	GGNNCC	2 cut(s)	305, 306
NspI	RCATGY	1 cut(s)	105
PciI	ACATGT	1 cut(s)	101
PcsI	WCGNNNNNNNCGW	1 cut(s)	248
PctI	GAATGC	1 cut(s)	210
PfeI	GAWTC	1 cut(s)	46
PkrI	GCNGC	2 cut(s)	246, 249
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PpuMI	RGGWCCY	1 cut(s)	304
PscI	ACATGT	1 cut(s)	101
PshAI	GACNNNNGTC	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	304
PspN4I	GGNNCC	2 cut(s)	305, 306
PspPI	GGNCC	3 cut(s)	76, 304, 314
PspPPI	RGGWCCY	1 cut(s)	304
SatI	GCNGC	2 cut(s)	245, 248
Sau3AI	GATC	1 cut(s)	274
Sau96I	GGNCC	3 cut(s)	76, 304, 314
SchI	GAGTC	1 cut(s)	123
ScrFI	CCNGG	1 cut(s)	139
SetI	ASST	3 cut(s)	90, 202, 237
SinI	GGWCC	3 cut(s)	76, 304, 314
Sse9I	AATT	1 cut(s)	174
SsiI	CCGC	3 cut(s)	154, 245, 248
StyD4I	CCNGG	1 cut(s)	137
TaaI	ACNGT	4 cut(s)	73, 164, 183, 287
TaiI	ACGT	1 cut(s)	202
TaqI	TCGA	2 cut(s)	185, 291
TasI	AATT	1 cut(s)	174
TauI	GCSGC	2 cut(s)	247, 250
TfiI	GAWTC	1 cut(s)	46
TspDTI	ATGAA	2 cut(s)	17, 203
TspGWI	ACGGA	1 cut(s)	246
VpaK11BI	GGWCC	3 cut(s)	76, 304, 314
XceI	RCATGY	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.