Prupe.1G283100_v2.0.a1

CLAVATA3 ESR (CLE)-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0018288
Physical Location & Seq
Reverse (-)
28535683 .. 28536852
1170 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G283100.1

Sequence Viewer

Length: 441 bp
ATGAAGAGCTCTCTCTCTTCTTGTTCAACCTCTACTTTCGGCCTCCGGCGGCTTTCGGTCTTGGCCTTGGTGGTGGTCTTCCTCTCGCTTCTTCTCACATCTGCCGCCACACCGGCGATCTCTAGCCCAACCAATATTGTACCAAGAAACCCTAGCACTAACCAAGAAGACAAGTTACTACACTACAAGGTCCAGGAGGCAAACCACCATCCTTTTCATCCTCAGCCGTGCGATCATCAGAGCTCAGTTTCGGAATCATCGAGTGCCCAATTACGTTCTTTGTGTCTTCAACTCCACCAACACAAAATCTTCCACGCCTACCAATCCATCCCACCGCCGCCGCCGCCACCCGTCGCTCTAGATCACCACGATGAGATTGACCCAAGATACGGCGTCGAGAAGAGACTCGTCCCCTCCGGCCCCAACCCTCTTCACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

147

Amino Acids

16.07

Weight (kDa)

7.87

Isoelectric Point (pI)

75.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26600 AT1G26600 AT1G69320
fragaria_vesca FvH4_4g30410
prunus_persica Prupe.1G283100_v2.0.a1
pyrus_communis pycom13g05750
rosa_chinensis RchiOBHm_Chr4g0438701
rosa_laevigata RLG00000006336
rosa_rugosa Rorug04G0312700
rosa_wichuraiana Rw0G016720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 6 cut(s) 49, 105, 335, 338, 341, 344
AcyI GRCGYC 1 cut(s) 393
AfaI GTAC 1 cut(s) 141
AfiI CCNNNNNNNGG 1 cut(s) 389
AgsI TTSAA 2 cut(s) 27, 290
AjnI CCWGG 1 cut(s) 192
AluBI AGCT 2 cut(s) 9, 243
AluI AGCT 2 cut(s) 9, 243
Alw21I GWGCWC 2 cut(s) 11, 245
Alw26I GTCTC 1 cut(s) 397
AoxI GGCC 3 cut(s) 40, 63, 418
AspS9I GGNCC 2 cut(s) 190, 419
AsuHPI GGTGA 1 cut(s) 356
AvaII GGWCC 1 cut(s) 190
BaeGI GKGCMC 1 cut(s) 268
BanII GRGCYC 2 cut(s) 11, 245
BarI GAAGNNNNNNTAC 2 cut(s) 159, 191
BbsI GAAGAC 3 cut(s) 70, 174, 278
Bbv12I GWGCWC 2 cut(s) 11, 245
BbvCI CCTCAGC 1 cut(s) 222
BccI CCATC 2 cut(s) 216, 335
BceAI ACGGC 2 cut(s) 211, 406
BciT130I CCWGG 1 cut(s) 194
BcoDI GTCTC 1 cut(s) 397
BfaI CTAG 3 cut(s) 123, 153, 359
BglI GCCNNNNNGGC 1 cut(s) 113
BisI GCNGC 5 cut(s) 50, 105, 338, 341, 344
BlsI GCNGC 5 cut(s) 51, 106, 339, 342, 345
Bme1390I CCNGG 1 cut(s) 194
Bme18I GGWCC 1 cut(s) 190
BmgT120I GGNCC 2 cut(s) 190, 419
BmiI GGNNCC 1 cut(s) 421
BmrFI CCNGG 1 cut(s) 194
BpiI GAAGAC 3 cut(s) 70, 174, 278
Bpu10I CCTNAGC 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 393
BsaJI CCNNGG 1 cut(s) 66
Bsc4I CCNNNNNNNGG 1 cut(s) 389
Bse118I RCCGGY 1 cut(s) 112
BseBI CCWGG 1 cut(s) 194
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 3 cut(s) 208, 217, 327
BseLI CCNNNNNNNGG 1 cut(s) 389
BseMII CTCAG 2 cut(s) 236, 258
BseSI GKGCMC 1 cut(s) 268
BshFI GGCC 3 cut(s) 42, 65, 420
BsiHKAI GWGCWC 2 cut(s) 11, 245
BsiSI CCGG 3 cut(s) 46, 113, 417
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 1 cut(s) 389
BsmAI GTCTC 1 cut(s) 397
BsmFI GGGAC 1 cut(s) 395
BsnI GGCC 3 cut(s) 42, 65, 420
Bsp1286I GDGCHC 3 cut(s) 11, 245, 268
Bsp143I GATC 3 cut(s) 117, 232, 361
BspACI CCGC 6 cut(s) 49, 105, 335, 338, 341, 344
BspANI GGCC 3 cut(s) 42, 65, 420
BspCNI CTCAG 2 cut(s) 235, 257
BspLI GGNNCC 1 cut(s) 421
BsrFI RCCGGY 1 cut(s) 112
BssAI RCCGGY 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 3 cut(s) 117, 232, 361
BssNI GRCGYC 1 cut(s) 393
BssT1I CCWWGG 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 194
Bst6I CTCTTC 3 cut(s) 22, 395, 435
BstACI GRCGYC 1 cut(s) 393
BstDEI CTNAG 2 cut(s) 222, 244
BstF5I GGATG 3 cut(s) 208, 217, 327
BstKTI GATC 3 cut(s) 120, 235, 364
BstMAI GTCTC 1 cut(s) 397
BstMBI GATC 3 cut(s) 117, 232, 361
BstMWI GCNNNNNNNGC 2 cut(s) 113, 343
BstNI CCWGG 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 192
BstSLI GKGCMC 1 cut(s) 268
BstV2I GAAGAC 3 cut(s) 70, 174, 278
BsuRI GGCC 3 cut(s) 42, 65, 420
BtsCI GGATG 3 cut(s) 208, 217, 327
Cfr10I RCCGGY 1 cut(s) 112
Cfr13I GGNCC 2 cut(s) 190, 419
CseI GACGC 1 cut(s) 382
Csp6I GTAC 1 cut(s) 140
CviJI RGCY 8 cut(s) 9, 42, 52, 65, 126, 226, 243, 420
CviKI_1 RGCY 8 cut(s) 9, 42, 52, 65, 126, 226, 243, 420
CviQI GTAC 1 cut(s) 140
DdeI CTNAG 2 cut(s) 222, 244
DpnI GATC 3 cut(s) 119, 234, 363
DpnII GATC 3 cut(s) 117, 232, 361
Eam1104I CTCTTC 3 cut(s) 22, 395, 435
EarI CTCTTC 3 cut(s) 22, 395, 435
Ecl136II GAGCTC 2 cut(s) 9, 243
Eco130I CCWWGG 1 cut(s) 66
Eco24I GRGCYC 2 cut(s) 11, 245
Eco47I GGWCC 1 cut(s) 190
Eco53kI GAGCTC 2 cut(s) 9, 243
EcoICRI GAGCTC 2 cut(s) 9, 243
EcoRII CCWGG 1 cut(s) 192
EcoT14I CCWWGG 1 cut(s) 66
EcoT38I GRGCYC 2 cut(s) 11, 245
ErhI CCWWGG 1 cut(s) 66
FaqI GGGAC 1 cut(s) 395
Fnu4HI GCNGC 5 cut(s) 50, 105, 338, 341, 344
FokI GGATG 3 cut(s) 195, 204, 314
FriOI GRGCYC 2 cut(s) 11, 245
Fsp4HI GCNGC 5 cut(s) 50, 105, 338, 341, 344
FspBI CTAG 3 cut(s) 123, 153, 359
GluI GCNGC 5 cut(s) 50, 105, 338, 341, 344
HaeIII GGCC 3 cut(s) 42, 65, 420
HapII CCGG 3 cut(s) 46, 113, 417
HgaI GACGC 1 cut(s) 382
Hin1I GRCGYC 1 cut(s) 393
HinfI GANTC 2 cut(s) 254, 405
HpaII CCGG 3 cut(s) 46, 113, 417
HphI GGTGA 1 cut(s) 356
Hpy188I TCNGA 2 cut(s) 240, 253
Hpy188III TCNNGA 2 cut(s) 359, 397
Hpy99I CGWCG 2 cut(s) 356, 398
HpyCH4IV ACGT 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 2 cut(s) 113, 343
HpyF3I CTNAG 2 cut(s) 222, 244
HpySE526I ACGT 1 cut(s) 274
Hsp92I GRCGYC 1 cut(s) 393
Kzo9I GATC 3 cut(s) 117, 232, 361
LpnPI CCDG 5 cut(s) 59, 126, 179, 206, 430
MaeI CTAG 3 cut(s) 123, 153, 359
MaeII ACGT 1 cut(s) 274
MaeIII GTNAC 1 cut(s) 174
MalI GATC 3 cut(s) 119, 234, 363
MboI GATC 3 cut(s) 117, 232, 361
MboII GAAGA 9 cut(s) 9, 16, 70, 83, 179, 278, 301, 412, 422
MfeI CAATTG 1 cut(s) 436
MhlI GDGCHC 3 cut(s) 11, 245, 268
MluCI AATT 2 cut(s) 269, 436
MlyI GAGTC 1 cut(s) 399
MnlI CCTC 7 cut(s) 40, 53, 92, 190, 231, 424, 438
MslI CAYNNNNRTG 1 cut(s) 369
MspI CCGG 3 cut(s) 46, 113, 417
MspR9I CCNGG 1 cut(s) 194
MunI CAATTG 1 cut(s) 436
MvaI CCWGG 1 cut(s) 194
MwoI GCNNNNNNNGC 2 cut(s) 113, 343
NdeII GATC 3 cut(s) 117, 232, 361
NlaIV GGNNCC 1 cut(s) 421
PcsI WCGNNNNNNNCGW 1 cut(s) 257
PfeI GAWTC 1 cut(s) 254
PfoI TCCNGGA 1 cut(s) 192
PkrI GCNGC 5 cut(s) 51, 106, 339, 342, 345
PleI GAGTC 1 cut(s) 399
PpsI GAGTC 1 cut(s) 399
Psp124BI GAGCTC 2 cut(s) 11, 245
Psp6I CCWGG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 192
PspN4I GGNNCC 1 cut(s) 421
PspPI GGNCC 2 cut(s) 190, 419
RsaI GTAC 1 cut(s) 141
RsaNI GTAC 1 cut(s) 140
RseI CAYNNNNRTG 1 cut(s) 369
SacI GAGCTC 2 cut(s) 11, 245
SatI GCNGC 5 cut(s) 50, 105, 338, 341, 344
Sau3AI GATC 3 cut(s) 117, 232, 361
Sau96I GGNCC 2 cut(s) 190, 419
SchI GAGTC 1 cut(s) 399
ScrFI CCNGG 1 cut(s) 194
SduI GDGCHC 3 cut(s) 11, 245, 268
SetI ASST 5 cut(s) 11, 32, 192, 245, 277
SgrAI CRCCGGYG 1 cut(s) 112
SinI GGWCC 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 369
Sse9I AATT 2 cut(s) 269, 436
SsiI CCGC 6 cut(s) 49, 105, 335, 338, 341, 344
SspI AATATT 1 cut(s) 136
SspMI CTAG 3 cut(s) 123, 153, 359
SstI GAGCTC 2 cut(s) 11, 245
StyD4I CCNGG 1 cut(s) 192
StyI CCWWGG 1 cut(s) 66
TaiI ACGT 1 cut(s) 277
TaqI TCGA 2 cut(s) 260, 396
TaqII GACCGA 1 cut(s) 46
TasI AATT 2 cut(s) 269, 436
TauI GCSGC 5 cut(s) 52, 107, 340, 343, 346
TfiI GAWTC 1 cut(s) 254
TspDTI ATGAA 2 cut(s) 17, 206
VpaK11BI GGWCC 1 cut(s) 190
XbaI TCTAGA 1 cut(s) 358
XspI CTAG 3 cut(s) 123, 153, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.