FvH4_4g30410

CLAVATA3 ESR (CLE)-related protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Forward (+)
30052657 .. 30053440
784 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g30410.t1

Sequence Viewer

Length: 327 bp
ATGAAGAGCGCTCTCTCTTCTTCTTCTTCATCTTCAAGAAAGCTTCTAATGGCGTTGGCGTTGGCGACGGTTGTTCTCCTACAGCTCTTTCTGCCTGTATCTGCTACCGTGGAACCAAGAAACACGGCCGCGAAAGAAACACACCGCCGGCACAGTTGCGACGCGATTTCAAGGTCGAGCCAGAAGCTACGTTCTTTGTGCATTCAGCTCCAGAGAGCACCGCACGTTCCGTCGCCGCCGCCGTCGCCGGAGGACTATCAGATTGATCCGAGATTCGGTGTCGAGAAGAGAAGGGTTCCTTCCGGGCCAAACCCTCTTCACAACTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

109

Amino Acids

11.85

Weight (kDa)

10.56

Isoelectric Point (pI)

95.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26600 AT1G26600 AT1G69320
fragaria_vesca FvH4_4g30410
prunus_persica Prupe.1G283100_v2.0.a1
pyrus_communis pycom13g05750
rosa_chinensis RchiOBHm_Chr4g0438701
rosa_laevigata RLG00000006336
rosa_rugosa Rorug04G0312700
rosa_wichuraiana Rw0G016720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 131, 164
AciI CCGC 5 cut(s) 129, 145, 221, 236, 239
AclWI GGATC 1 cut(s) 260
AcoI YGGCCR 1 cut(s) 126
AfeI AGCGCT 1 cut(s) 10
AfiI CCNNNNNNNGG 1 cut(s) 275
AgsI TTSAA 2 cut(s) 36, 171
AluBI AGCT 4 cut(s) 43, 85, 187, 208
AluI AGCT 4 cut(s) 43, 85, 187, 208
Alw21I GWGCWC 1 cut(s) 220
AlwI GGATC 1 cut(s) 260
Aor51HI AGCGCT 1 cut(s) 10
AoxI GGCC 2 cut(s) 126, 305
AspLEI GCGC 1 cut(s) 11
AspS9I GGNCC 1 cut(s) 305
AsuC2I CCSGG 1 cut(s) 304
Bbv12I GWGCWC 1 cut(s) 220
BceAI ACGGC 2 cut(s) 141, 226
BcnI CCSGG 1 cut(s) 304
BfmI CTRYAG 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 12
BisI GCNGC 3 cut(s) 129, 236, 239
BlsI GCNGC 3 cut(s) 130, 237, 240
Bme1390I CCNGG 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 2 cut(s) 114, 297
BmrFI CCNGG 1 cut(s) 304
BpmI CTGGAG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 304
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 275
Bse118I RCCGGY 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 275
BseX3I CGGCCG 1 cut(s) 126
Bsh1236I CGCG 2 cut(s) 131, 164
Bsh1285I CGRYCG 1 cut(s) 129
BshFI GGCC 2 cut(s) 128, 307
BsiEI CGRYCG 1 cut(s) 129
BsiHKAI GWGCWC 1 cut(s) 220
BsiSI CCGG 3 cut(s) 148, 248, 303
BslI CCNNNNNNNGG 1 cut(s) 275
BsmI GAATGC 1 cut(s) 201
BsnI GGCC 2 cut(s) 128, 307
Bsp1286I GDGCHC 1 cut(s) 220
Bsp143I GATC 1 cut(s) 265
BspACI CCGC 5 cut(s) 129, 145, 221, 236, 239
BspANI GGCC 2 cut(s) 128, 307
BspFNI CGCG 2 cut(s) 131, 164
BspLI GGNNCC 2 cut(s) 114, 297
BspPI GGATC 1 cut(s) 260
BsrFI RCCGGY 1 cut(s) 147
BssAI RCCGGY 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 108
BssMI GATC 1 cut(s) 265
Bst4CI ACNGT 3 cut(s) 70, 109, 155
Bst6I CTCTTC 3 cut(s) 22, 281, 321
BstC8I GCNNGC 1 cut(s) 149
BstDSI CCRYGG 1 cut(s) 108
BstFNI CGCG 2 cut(s) 131, 164
BstH2I RGCGCY 1 cut(s) 12
BstHHI GCGC 1 cut(s) 11
BstKTI GATC 1 cut(s) 268
BstMBI GATC 1 cut(s) 265
BstMCI CGRYCG 1 cut(s) 129
BstMWI GCNNNNNNNGC 2 cut(s) 91, 244
BstSCI CCNGG 1 cut(s) 302
BstSFI CTRYAG 1 cut(s) 80
BstUI CGCG 2 cut(s) 131, 164
BstZI CGGCCG 1 cut(s) 126
BsuRI GGCC 2 cut(s) 128, 307
BtgI CCRYGG 1 cut(s) 108
Cac8I GCNNGC 1 cut(s) 149
CfoI GCGC 1 cut(s) 11
Cfr10I RCCGGY 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 305
CseI GACGC 1 cut(s) 170
CviJI RGCY 7 cut(s) 43, 85, 128, 180, 187, 208, 307
CviKI_1 RGCY 7 cut(s) 43, 85, 128, 180, 187, 208, 307
DpnI GATC 1 cut(s) 267
DpnII GATC 1 cut(s) 265
EaeI YGGCCR 1 cut(s) 126
EagI CGGCCG 1 cut(s) 126
Eam1104I CTCTTC 3 cut(s) 22, 281, 321
EarI CTCTTC 3 cut(s) 22, 281, 321
EclXI CGGCCG 1 cut(s) 126
Eco47III AGCGCT 1 cut(s) 10
Eco52I CGGCCG 1 cut(s) 126
FalI AAGNNNNNCTT 2 cut(s) 283, 315
Fnu4HI GCNGC 3 cut(s) 129, 236, 239
Fsp4HI GCNGC 3 cut(s) 129, 236, 239
GlaI GCGC 1 cut(s) 10
GluI GCNGC 3 cut(s) 129, 236, 239
GsuI CTGGAG 1 cut(s) 194
HaeII RGCGCY 1 cut(s) 12
HaeIII GGCC 2 cut(s) 128, 307
HapII CCGG 3 cut(s) 148, 248, 303
HgaI GACGC 1 cut(s) 170
HhaI GCGC 1 cut(s) 11
Hin6I GCGC 1 cut(s) 9
HinP1I GCGC 1 cut(s) 9
HindIII AAGCTT 1 cut(s) 41
HinfI GANTC 1 cut(s) 273
HpaII CCGG 3 cut(s) 148, 248, 303
Hpy188I TCNGA 2 cut(s) 261, 270
Hpy188III TCNNGA 3 cut(s) 36, 211, 283
Hpy99I CGWCG 4 cut(s) 70, 164, 235, 247
HpyAV CCTTC 2 cut(s) 285, 309
HpyCH4III ACNGT 3 cut(s) 70, 109, 155
HpyCH4IV ACGT 2 cut(s) 190, 225
HpyCH4V TGCA 1 cut(s) 201
HpyF10VI GCNNNNNNNGC 2 cut(s) 91, 244
HpySE526I ACGT 2 cut(s) 190, 225
HspAI GCGC 1 cut(s) 9
KroI GCCGGC 1 cut(s) 147
KroNI GCCGGC 1 cut(s) 149
Kzo9I GATC 1 cut(s) 265
LmnI GCTCC 1 cut(s) 213
LpnPI CCDG 6 cut(s) 108, 161, 194, 224, 261, 316
MaeII ACGT 2 cut(s) 190, 225
MalI GATC 1 cut(s) 267
MboI GATC 1 cut(s) 265
MboII GAAGA 8 cut(s) 9, 12, 15, 16, 18, 24, 298, 308
MhlI GDGCHC 1 cut(s) 220
MnlI CCTC 2 cut(s) 244, 324
MroNI GCCGGC 1 cut(s) 147
MspI CCGG 3 cut(s) 148, 248, 303
MspR9I CCNGG 1 cut(s) 304
Mva1269I GAATGC 1 cut(s) 201
MvnI CGCG 2 cut(s) 131, 164
MwoI GCNNNNNNNGC 2 cut(s) 91, 244
NaeI GCCGGC 1 cut(s) 149
NciI CCSGG 1 cut(s) 304
NdeII GATC 1 cut(s) 265
NgoMIV GCCGGC 1 cut(s) 147
NlaIV GGNNCC 2 cut(s) 114, 297
PcsI WCGNNNNNNNCGW 1 cut(s) 239
PctI GAATGC 1 cut(s) 201
PdiI GCCGGC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 273
PkrI GCNGC 3 cut(s) 130, 237, 240
PspN4I GGNNCC 2 cut(s) 114, 297
PspPI GGNCC 1 cut(s) 305
SatI GCNGC 3 cut(s) 129, 236, 239
Sau3AI GATC 1 cut(s) 265
Sau96I GGNCC 1 cut(s) 305
ScrFI CCNGG 1 cut(s) 304
SduI GDGCHC 1 cut(s) 220
SetI ASST 7 cut(s) 45, 87, 176, 189, 193, 210, 228
SfcI CTRYAG 1 cut(s) 80
SsiI CCGC 5 cut(s) 129, 145, 221, 236, 239
StyD4I CCNGG 1 cut(s) 302
TaaI ACNGT 3 cut(s) 70, 109, 155
TaiI ACGT 2 cut(s) 193, 228
TaqI TCGA 2 cut(s) 176, 282
TauI GCSGC 3 cut(s) 131, 238, 241
TfiI GAWTC 1 cut(s) 273
TspDTI ATGAA 2 cut(s) 17, 18
TspGWI ACGGA 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.