AT1G69320

CLAVATA3 ESR (CLE)-related protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
26061774 .. 26062536
763 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G69320.1

Sequence Viewer

Length: 324 bp
ATGAAGACTAACCGGAACCGTCCGATCAACATCCTCATCGTCTTCTTCCTTCTTACGACCGCAAGAGCAGCAACAAGAAACTGGACCAACCGAACTCACCGAACCGTCCCTAAGGTTCAACACGCGTACTACGCATATCCTCACCGTTCATGCGAATCTTTCTCTCGTCCATACGCACGCTCTATGTGCATTGAGCTCGAAAGAATCCACAGAAGCAGTCGACAACCGCTTTTCTCTCCTCCGCCTCCTCCGACGGAGATTGATCAAAGGTACGGCGTCGAGAAAAGACTTGTTCCCTCCGGTCCAAACCCACTTCACAACTGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

12.55

Weight (kDa)

10.87

Isoelectric Point (pI)

76.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0018288)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26600 AT1G26600 AT1G69320
fragaria_vesca FvH4_4g30410
prunus_persica Prupe.1G283100_v2.0.a1
pyrus_communis pycom13g05750
rosa_chinensis RchiOBHm_Chr4g0438701
rosa_laevigata RLG00000006336
rosa_rugosa Rorug04G0312700
rosa_wichuraiana Rw0G016720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 220
AccII CGCG 1 cut(s) 125
AciI CCGC 3 cut(s) 60, 227, 242
AcyI GRCGYC 1 cut(s) 276
AfaI GTAC 2 cut(s) 128, 272
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 1 cut(s) 119
AluBI AGCT 1 cut(s) 196
AluI AGCT 1 cut(s) 196
Alw21I GWGCWC 1 cut(s) 198
ApeKI GCWGC 1 cut(s) 68
AspS9I GGNCC 2 cut(s) 84, 302
AsuHPI GGTGA 2 cut(s) 89, 134
AvaII GGWCC 2 cut(s) 84, 302
AxyI CCTNAGG 1 cut(s) 111
BanII GRGCYC 1 cut(s) 198
BbsI GAAGAC 2 cut(s) 11, 34
Bbv12I GWGCWC 1 cut(s) 198
BbvI GCAGC 1 cut(s) 80
BceAI ACGGC 1 cut(s) 289
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BclI TGATCA 1 cut(s) 262
BisI GCNGC 1 cut(s) 69
BlsI GCNGC 1 cut(s) 70
Bme18I GGWCC 2 cut(s) 84, 302
BmgT120I GGNCC 2 cut(s) 84, 302
BmiI GGNNCC 1 cut(s) 17
BpiI GAAGAC 2 cut(s) 11, 34
BsaBI GATNNNNATC 1 cut(s) 29
BsaHI GRCGYC 1 cut(s) 276
BsaWI WCCGGW 2 cut(s) 12, 299
Bse1I ACTGG 1 cut(s) 86
Bse21I CCTNAGG 1 cut(s) 111
Bse8I GATNNNNATC 1 cut(s) 29
BseGI GGATG 1 cut(s) 30
BseJI GATNNNNATC 1 cut(s) 29
BseNI ACTGG 1 cut(s) 86
BseRI GAGGAG 2 cut(s) 228, 237
BseXI GCAGC 1 cut(s) 80
Bsh1236I CGCG 1 cut(s) 125
Bsh1285I CGRYCG 1 cut(s) 60
BsiEI CGRYCG 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 198
BsiSI CCGG 2 cut(s) 13, 300
BslFI GGGAC 1 cut(s) 92
BsmFI GGGAC 1 cut(s) 92
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 2 cut(s) 24, 262
BspACI CCGC 3 cut(s) 60, 227, 242
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 17
BsrI ACTGG 1 cut(s) 86
BssMI GATC 2 cut(s) 24, 262
BssNI GRCGYC 1 cut(s) 276
Bst4CI ACNGT 3 cut(s) 20, 106, 146
BstACI GRCGYC 1 cut(s) 276
BstC8I GCNNGC 1 cut(s) 178
BstDEI CTNAG 1 cut(s) 111
BstF5I GGATG 1 cut(s) 30
BstFNI CGCG 1 cut(s) 125
BstKTI GATC 2 cut(s) 27, 265
BstMBI GATC 2 cut(s) 24, 262
BstMCI CGRYCG 1 cut(s) 60
BstMWI GCNNNNNNNGC 3 cut(s) 68, 131, 186
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 1 cut(s) 80
BstV2I GAAGAC 2 cut(s) 11, 34
Bsu36I CCTNAGG 1 cut(s) 111
BtsCI GGATG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 178
Cfr13I GGNCC 2 cut(s) 84, 302
CseI GACGC 1 cut(s) 265
Csp6I GTAC 2 cut(s) 127, 271
CviAII CATG 1 cut(s) 150
CviJI RGCY 1 cut(s) 196
CviKI_1 RGCY 1 cut(s) 196
CviQI GTAC 2 cut(s) 127, 271
DdeI CTNAG 1 cut(s) 111
DpnI GATC 2 cut(s) 26, 264
DpnII GATC 2 cut(s) 24, 262
EciI GGCGGA 1 cut(s) 231
Ecl136II GAGCTC 1 cut(s) 196
Eco24I GRGCYC 1 cut(s) 198
Eco47I GGWCC 2 cut(s) 84, 302
Eco53kI GAGCTC 1 cut(s) 196
Eco81I CCTNAGG 1 cut(s) 111
EcoICRI GAGCTC 1 cut(s) 196
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 1 cut(s) 153
FaiI YATR 4 cut(s) 136, 151, 172, 185
FaqI GGGAC 1 cut(s) 92
FatI CATG 1 cut(s) 149
FbaI TGATCA 1 cut(s) 262
FblI GTMKAC 1 cut(s) 220
Fnu4HI GCNGC 1 cut(s) 69
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 1 cut(s) 69
GluI GCNGC 1 cut(s) 69
HapII CCGG 2 cut(s) 13, 300
HgaI GACGC 1 cut(s) 265
Hin1I GRCGYC 1 cut(s) 276
Hin1II CATG 1 cut(s) 153
HincII GTYRAC 1 cut(s) 221
HindII GTYRAC 1 cut(s) 221
HinfI GANTC 2 cut(s) 155, 204
HpaII CCGG 2 cut(s) 13, 300
HphI GGTGA 2 cut(s) 89, 134
Hpy166II GTNNAC 1 cut(s) 221
Hpy188I TCNGA 2 cut(s) 24, 252
Hpy188III TCNNGA 1 cut(s) 280
Hpy8I GTNNAC 1 cut(s) 221
Hpy99I CGWCG 2 cut(s) 256, 281
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 3 cut(s) 20, 106, 146
HpyCH4V TGCA 1 cut(s) 189
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 131, 186
HpyF3I CTNAG 1 cut(s) 111
Hsp92I GRCGYC 1 cut(s) 276
Hsp92II CATG 1 cut(s) 153
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 2 cut(s) 24, 262
LpnPI CCDG 3 cut(s) 26, 67, 313
Lsp1109I GCAGC 1 cut(s) 80
MalI GATC 2 cut(s) 26, 264
MboI GATC 2 cut(s) 24, 262
MboII GAAGA 3 cut(s) 16, 34, 37
MhlI GDGCHC 1 cut(s) 198
MluI ACGCGT 1 cut(s) 123
MmeI TCCRAC 1 cut(s) 275
MnlI CCTC 6 cut(s) 44, 150, 249, 255, 258, 307
MspI CCGG 2 cut(s) 13, 300
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 3 cut(s) 68, 131, 186
NdeII GATC 2 cut(s) 24, 262
NlaIII CATG 1 cut(s) 153
NlaIV GGNNCC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 155, 204
PkrI GCNGC 1 cut(s) 70
Psp124BI GAGCTC 1 cut(s) 198
PspN4I GGNNCC 1 cut(s) 17
PspPI GGNCC 2 cut(s) 84, 302
RsaI GTAC 2 cut(s) 128, 272
RsaNI GTAC 2 cut(s) 127, 271
SacI GAGCTC 1 cut(s) 198
SalI GTCGAC 1 cut(s) 219
SatI GCNGC 1 cut(s) 69
Sau3AI GATC 2 cut(s) 24, 262
Sau96I GGNCC 2 cut(s) 84, 302
SduI GDGCHC 1 cut(s) 198
SetI ASST 3 cut(s) 117, 198, 272
SinI GGWCC 2 cut(s) 84, 302
SsiI CCGC 3 cut(s) 60, 227, 242
SstI GAGCTC 1 cut(s) 198
TaaI ACNGT 3 cut(s) 20, 106, 146
TaqI TCGA 3 cut(s) 198, 220, 279
TfiI GAWTC 2 cut(s) 155, 204
TseI GCWGC 1 cut(s) 68
TspDTI ATGAA 2 cut(s) 17, 138
TspGWI ACGGA 1 cut(s) 269
VpaK11BI GGWCC 2 cut(s) 84, 302
XmiI GTMKAC 1 cut(s) 220
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.