AT1G26760

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015044
Physical Location & Seq
Reverse (-)
9248152 .. 9249943
1792 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G26760.1

Sequence Viewer

Length: 1638 bp
ATGAGAGGAGAGCAATTCGAGCTAGAGGAAGATAGAGACGGGCCACTGGAGCTGTTGCAGAGCTTGAGATCTAAAGCAACGGAGCTTCTTCTTCGAGAAGAATGGGAAGAATCTATAAAAGTTTACACGGAGTTCATCGATCTCTCTCGGAGGCAAGTCTCAAGTACTGGTGGATCCGACCCGGATCCGGATTCGATTGCTAAGCTCCGGAAATCTCTCTGTTTGGCTCTATGTAATCGAGCTGAGGCAAGAGCTAGGCTACGAGATTTTTTGGAAGCAATGAGGGATTGTGATCAAGCACTTGAAATCGAGAAGACTCATTTCAAGACTCTTCTTTGTAAAGGTAAAGTTTTGCTTGGATTGAGCAAATACTCTTTGGCTTTGGAATGTTTTAAAACGGCTTTGCTCGATCCACAAGCGAGTGATAACTTGGAGACTGTTACTGTGTATATAGAGAAATGTAAGAAGCTTGAGTTTCAGGCAAAGACTGGAGCTTTTGATTTGTCTGATTGGATCTTAAGTGAGTTTCGTGGGAAATGTCCTGAGCTTGCTGAGTTTATTGGGTCGATTGAGATTAAGAAATCTGAGCTTAGTGGGCGTGGATTGTTTGCTACGAAGAACATTGTTGCTGGTACTTTGGTTTTAGTTACAAAGGCGGTTGCGATTGAGAGAGGGATCTTAGGAAATGGAGAGTGTGGGGAAAAAGCGCAGTTGATCATGTGGAAGAACTTCGTTGAAGAGGTTACTGAATCCGTGAGAAAATGCGGTAGGACTCGTCGAGTTGTCTCCGCTTTGTCCACTGGACAAGGTGAAGATAGTCTGGAGATTCCTGAGATAGCTCTGTTTAGACCTGATGAAGCATTTGAAACTTGTGGTGACTGGAAACAGAGTTTGGATACAGAGAAGTTGTTGAGTATCTTGGATGTGAATTCTCTGGTGGAAGATGCGGTTTCAGGTAAAGTTATGGGGAAGAACAAAGAGTATTACGGTGTAGGGCTATGGACTTTAGCTTCATTCATCAACCACTCGTGTATCCCTAACGCAAGACGTCTTCACGTTGGAGACTACGTGATTGTTCATGCCTCGAGAGATATCAAAACAGGGGAAGAGATTAGCTTTGCTTACTTTGATGTGCTTTCTCCATTGGAAAAACGGAAAGAGATGGCTGAGTCATGGGGGTTTTGTTGCGGATGCAGTAGATGCAAGTTTGAGAGTGTCTTGTATGCTACCAACCAGGAGGTTAGAGAGTTTGAAATGGGTTTAGAGAGAGGCGTAGATGCAGGGAACGCGGTTTATATGGTGGAGGAAGGGATGAAGAGATGGAAGGTAAAAGGGAAAGATAAAGGGTTGCTGAGAGCATCTTATTGGGGAGTTTATGATGAGATTTATAACTCAGAGAGACTTATGAAAAGGTGGGGAAGGAAGATACCAACAATGGAAGTTGTGGTGGATAGTGTCTCTGATGTTGTTGGAAGTGATGAGAGATTGATGAAGATGGCTGTGGAAGGGATGATGAAGAAGCATGGAGGTTTCAGTAACATTGTGGAGATGGAGAAAATCATGAAGCTAGGGAAGGGGGTTTATGGCAAAGTGGTATCGAAAAAGAAGGCAATGAAGACTCTTCTTGGCATAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

545

Amino Acids

61.31

Weight (kDa)

6.04

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 199 - 375 1.1e-14 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26760
fragaria_vesca FvH4_4g31050
malus_domestica MD13G1069000.v1.1
prunus_persica Prupe.1G278000_v2.0.a1
pyrus_communis pycom13g06180 pycom16g06040
rosa_chinensis RchiOBHm_Chr4g0439431
rosa_laevigata RLG00000006273
rosa_multiflora Rmu_sc0007276.1_g000002
rosa_roxburghii Rroxscaffold_5G00380340
rosa_rugosa Rorug04G0318100
rosa_samantha Rh4AG369400 Rh4BG381200 Rh4CG395800 Rh4DG375900
rosa_wichuraiana Rw4G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1389
AatII GACGTC 1 cut(s) 1051
AccII CGCG 1 cut(s) 1289
AccIII TCCGGA 2 cut(s) 187, 207
AciI CCGC 6 cut(s) 656, 765, 789, 947, 1188, 1289
AclWI GGATC 7 cut(s) 168, 179, 181, 192, 404, 521, 683
AcsI RAATTY 1 cut(s) 928
AcyI GRCGYC 1 cut(s) 1048
AfaI GTAC 2 cut(s) 166, 634
AfiI CCNNNNNNNGG 1 cut(s) 187
AflII CTTAAG 1 cut(s) 517
AgsI TTSAA 5 cut(s) 305, 325, 737, 866, 1253
AjnI CCWGG 1 cut(s) 1233
AjuI GAANNNNNNNTTGG 2 cut(s) 875, 907
Alw26I GTCTC 7 cut(s) 30, 163, 428, 790, 1056, 1393, 1462
AlwI GGATC 7 cut(s) 168, 179, 181, 192, 404, 521, 683
Ama87I CYCGRG 1 cut(s) 1084
Aor13HI TCCGGA 2 cut(s) 187, 207
AoxI GGCC 1 cut(s) 41
ApoI RAATTY 1 cut(s) 928
Asp700I GAANNNNTTC 1 cut(s) 728
AspLEI GCGC 1 cut(s) 709
AspS9I GGNCC 1 cut(s) 41
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 2 cut(s) 821, 887
AvaI CYCGRG 1 cut(s) 1084
BaeI ACNNNNGTAYC 4 cut(s) 624, 657, 1015, 1048
BamHI GGATCC 2 cut(s) 173, 184
BauI CACGAG 1 cut(s) 1027
BbsI GAAGAC 3 cut(s) 320, 1043, 1622
BbvCI CCTCAGC 1 cut(s) 243
BccI CCATC 4 cut(s) 1156, 1314, 1489, 1543
BceAI ACGGC 1 cut(s) 414
BciT130I CCWGG 1 cut(s) 1235
BciVI GTATCC 2 cut(s) 889, 1043
BclI TGATCA 2 cut(s) 292, 714
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 7 cut(s) 30, 163, 428, 790, 1056, 1393, 1462
BfaI CTAG 3 cut(s) 23, 255, 1568
BfrI CTTAAG 1 cut(s) 517
BfuI GTATCC 2 cut(s) 889, 1043
BglII AGATCT 1 cut(s) 68
BlpI GCTNAGC 1 cut(s) 201
BmcAI AGTACT 1 cut(s) 166
Bme1390I CCNGG 2 cut(s) 182, 1235
BmeT110I CYCGRG 1 cut(s) 1084
BmgT120I GGNCC 1 cut(s) 41
BmiI GGNNCC 2 cut(s) 175, 186
BmrFI CCNGG 2 cut(s) 182, 1235
BmsI GCATC 5 cut(s) 934, 1181, 1190, 1267, 1367
BpiI GAAGAC 3 cut(s) 320, 1043, 1622
BpmI CTGGAG 3 cut(s) 68, 510, 842
Bpu10I CCTNAGC 2 cut(s) 243, 543
Bpu1102I GCTNAGC 1 cut(s) 201
BpuEI CTTGAG 3 cut(s) 85, 145, 491
BpuMI CCSGG 1 cut(s) 182
Bsa29I ATCGAT 1 cut(s) 138
BsaAI YACGTR 1 cut(s) 1069
BsaBI GATNNNNATC 1 cut(s) 291
BsaHI GRCGYC 1 cut(s) 1048
BsaWI WCCGGW 2 cut(s) 187, 207
BsaXI ACNNNNNCTCC 2 cut(s) 1053, 1083
Bsc4I CCNNNNNNNGG 1 cut(s) 187
Bse1I ACTGG 5 cut(s) 51, 172, 493, 805, 884
Bse3DI GCAATG 2 cut(s) 285, 1617
Bse8I GATNNNNATC 1 cut(s) 291
BseAI TCCGGA 2 cut(s) 187, 207
BseBI CCWGG 1 cut(s) 1235
BseCI ATCGAT 1 cut(s) 138
BseGI GGATG 4 cut(s) 928, 1196, 1317, 1515
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 187
BseMI GCAATG 2 cut(s) 285, 1617
BseMII CTCAG 8 cut(s) 234, 534, 543, 576, 822, 1158, 1343, 1407
BseNI ACTGG 5 cut(s) 51, 172, 493, 805, 884
BseRI GAGGAG 1 cut(s) 21
Bsh1236I CGCG 1 cut(s) 1289
BshFI GGCC 1 cut(s) 43
BshVI ATCGAT 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 1084
BsiSI CCGG 3 cut(s) 182, 188, 208
BslI CCNNNNNNNGG 1 cut(s) 187
BsmAI GTCTC 7 cut(s) 30, 163, 428, 790, 1056, 1393, 1462
BsmBI CGTCTC 1 cut(s) 30
BsnI GGCC 1 cut(s) 43
BsoBI CYCGRG 1 cut(s) 1084
Bsp13I TCCGGA 2 cut(s) 187, 207
Bsp143I GATC 9 cut(s) 68, 139, 173, 184, 292, 409, 513, 675, 714
Bsp1720I GCTNAGC 1 cut(s) 201
BspACI CCGC 6 cut(s) 656, 765, 789, 947, 1188, 1289
BspANI GGCC 1 cut(s) 43
BspCNI CTCAG 8 cut(s) 235, 535, 544, 577, 823, 1159, 1344, 1406
BspDI ATCGAT 1 cut(s) 138
BspEI TCCGGA 2 cut(s) 187, 207
BspFNI CGCG 1 cut(s) 1289
BspHI TCATGA 1 cut(s) 1560
BspLI GGNNCC 2 cut(s) 175, 186
BspPI GGATC 7 cut(s) 168, 179, 181, 192, 404, 521, 683
BspTI CTTAAG 1 cut(s) 517
BsrDI GCAATG 2 cut(s) 285, 1617
BsrI ACTGG 5 cut(s) 51, 172, 493, 805, 884
BssMI GATC 9 cut(s) 68, 139, 173, 184, 292, 409, 513, 675, 714
BssNI GRCGYC 1 cut(s) 1048
BssSI CACGAG 1 cut(s) 1027
Bst2BI CACGAG 1 cut(s) 1027
Bst2UI CCWGG 1 cut(s) 1235
Bst4CI ACNGT 3 cut(s) 439, 445, 989
Bst6I CTCTTC 5 cut(s) 336, 732, 1101, 1310, 1626
BstACI GRCGYC 1 cut(s) 1048
BstAFI CTTAAG 1 cut(s) 517
BstAPI GCANNNNNTGC 1 cut(s) 1200
BstBAI YACGTR 1 cut(s) 1069
BstC8I GCNNGC 1 cut(s) 549
BstF5I GGATG 4 cut(s) 928, 1196, 1317, 1515
BstFNI CGCG 1 cut(s) 1289
BstHHI GCGC 1 cut(s) 709
BstKTI GATC 9 cut(s) 71, 142, 176, 187, 295, 412, 516, 678, 717
BstMAI GTCTC 7 cut(s) 30, 163, 428, 790, 1056, 1393, 1462
BstMBI GATC 9 cut(s) 68, 139, 173, 184, 292, 409, 513, 675, 714
BstMWI GCNNNNNNNGC 5 cut(s) 19, 49, 595, 1200, 1286
BstNI CCWGG 1 cut(s) 1235
BstSCI CCNGG 2 cut(s) 180, 1233
BstUI CGCG 1 cut(s) 1289
BstV2I GAAGAC 3 cut(s) 320, 1043, 1622
BstX2I RGATCY 5 cut(s) 68, 173, 184, 513, 675
BstYI RGATCY 5 cut(s) 68, 173, 184, 513, 675
Bsu15I ATCGAT 1 cut(s) 138
BsuI GTATCC 2 cut(s) 889, 1043
BsuRI GGCC 1 cut(s) 43
BsuTUI ATCGAT 1 cut(s) 138
BtsCI GGATG 4 cut(s) 928, 1196, 1317, 1515
BtsIMutI CAGTG 2 cut(s) 44, 798
Cac8I GCNNGC 1 cut(s) 549
CciI TCATGA 1 cut(s) 1560
CfoI GCGC 1 cut(s) 709
Cfr13I GGNCC 1 cut(s) 41
ClaI ATCGAT 1 cut(s) 138
Csp6I GTAC 2 cut(s) 165, 633
CviAII CATG 5 cut(s) 718, 1079, 1173, 1523, 1561
CviQI GTAC 2 cut(s) 165, 633
DpnI GATC 9 cut(s) 70, 141, 175, 186, 294, 411, 515, 677, 716
DpnII GATC 9 cut(s) 68, 139, 173, 184, 292, 409, 513, 675, 714
DraI TTTAAA 1 cut(s) 394
Eam1104I CTCTTC 5 cut(s) 336, 732, 1101, 1310, 1626
EarI CTCTTC 5 cut(s) 336, 732, 1101, 1310, 1626
Eco32I GATATC 1 cut(s) 1093
Eco88I CYCGRG 1 cut(s) 1084
EcoRI GAATTC 1 cut(s) 928
EcoRII CCWGG 1 cut(s) 1233
EcoRV GATATC 1 cut(s) 1093
Esp3I CGTCTC 1 cut(s) 30
FaeI CATG 5 cut(s) 721, 1082, 1176, 1526, 1564
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FatI CATG 5 cut(s) 717, 1078, 1172, 1522, 1560
FbaI TGATCA 2 cut(s) 292, 714
FokI GGATG 4 cut(s) 935, 1203, 1324, 1522
FspBI CTAG 3 cut(s) 23, 255, 1568
GlaI GCGC 1 cut(s) 708
GsuI CTGGAG 3 cut(s) 68, 510, 842
HaeIII GGCC 1 cut(s) 43
HapII CCGG 3 cut(s) 182, 188, 208
HhaI GCGC 1 cut(s) 709
Hin1I GRCGYC 1 cut(s) 1048
Hin1II CATG 5 cut(s) 721, 1082, 1176, 1526, 1564
Hin6I GCGC 1 cut(s) 707
HinP1I GCGC 1 cut(s) 707
HindIII AAGCTT 1 cut(s) 467
HinfI GANTC 9 cut(s) 110, 191, 316, 328, 749, 772, 826, 1169, 1618
HpaII CCGG 3 cut(s) 182, 188, 208
HphI GGTGA 2 cut(s) 821, 887
Hpy166II GTNNAC 2 cut(s) 124, 798
Hpy188I TCNGA 6 cut(s) 150, 178, 508, 586, 1396, 1462
Hpy8I GTNNAC 2 cut(s) 124, 798
Hpy99I CGWCG 1 cut(s) 780
HpyAV CCTTC 6 cut(s) 1301, 1318, 1413, 1499, 1567, 1600
HpyCH4III ACNGT 3 cut(s) 439, 445, 989
HpyCH4IV ACGT 3 cut(s) 1048, 1056, 1068
HpyCH4V TGCA 4 cut(s) 58, 1194, 1203, 1280
HpyF10VI GCNNNNNNNGC 5 cut(s) 19, 49, 595, 1200, 1286
HpySE526I ACGT 3 cut(s) 1048, 1056, 1068
Hsp92I GRCGYC 1 cut(s) 1048
Hsp92II CATG 5 cut(s) 721, 1082, 1176, 1526, 1564
HspAI GCGC 1 cut(s) 707
Kpn2I TCCGGA 2 cut(s) 187, 207
Ksp22I TGATCA 2 cut(s) 292, 714
Kzo9I GATC 9 cut(s) 68, 139, 173, 184, 292, 409, 513, 675, 714
LmnI GCTCC 4 cut(s) 49, 82, 210, 491
LweI GCATC 5 cut(s) 934, 1181, 1190, 1267, 1367
MaeI CTAG 3 cut(s) 23, 255, 1568
MaeII ACGT 3 cut(s) 1048, 1056, 1068
MaeIII GTNAC 5 cut(s) 439, 646, 742, 875, 1535
MalI GATC 9 cut(s) 70, 141, 175, 186, 294, 411, 515, 677, 716
MboI GATC 9 cut(s) 68, 139, 173, 184, 292, 409, 513, 675, 714
MflI RGATCY 5 cut(s) 68, 173, 184, 513, 675
MluCI AATT 2 cut(s) 14, 928
MlyI GAGTC 5 cut(s) 310, 322, 766, 1178, 1612
MmeI TCCRAC 3 cut(s) 201, 1039, 1450
MroI TCCGGA 2 cut(s) 187, 207
MroXI GAANNNNTTC 1 cut(s) 728
MseI TTAA 3 cut(s) 393, 518, 576
MspCI CTTAAG 1 cut(s) 517
MspI CCGG 3 cut(s) 182, 188, 208
MspR9I CCNGG 2 cut(s) 182, 1235
MvaI CCWGG 1 cut(s) 1235
MvnI CGCG 1 cut(s) 1289
MwoI GCNNNNNNNGC 5 cut(s) 19, 49, 595, 1200, 1286
NciI CCSGG 1 cut(s) 182
NdeII GATC 9 cut(s) 68, 139, 173, 184, 292, 409, 513, 675, 714
NlaIII CATG 5 cut(s) 721, 1082, 1176, 1526, 1564
NlaIV GGNNCC 2 cut(s) 175, 186
NmuCI GTSAC 1 cut(s) 875
PaeR7I CTCGAG 1 cut(s) 1084
PagI TCATGA 1 cut(s) 1560
PdmI GAANNNNTTC 1 cut(s) 728
PfeI GAWTC 4 cut(s) 110, 191, 749, 826
PleI GAGTC 5 cut(s) 310, 322, 766, 1177, 1612
PpsI GAGTC 5 cut(s) 310, 322, 766, 1177, 1612
Ppu21I YACGTR 1 cut(s) 1069
PsiI TTATAA 1 cut(s) 1389
Psp6I CCWGG 1 cut(s) 1233
PspGI CCWGG 1 cut(s) 1233
PspN4I GGNNCC 2 cut(s) 175, 186
PspPI GGNCC 1 cut(s) 41
PsuI RGATCY 5 cut(s) 68, 173, 184, 513, 675
RsaI GTAC 2 cut(s) 166, 634
RsaNI GTAC 2 cut(s) 165, 633
SaqAI TTAA 3 cut(s) 393, 518, 576
Sau3AI GATC 9 cut(s) 68, 139, 173, 184, 292, 409, 513, 675, 714
Sau96I GGNCC 1 cut(s) 41
ScaI AGTACT 1 cut(s) 166
SchI GAGTC 5 cut(s) 310, 322, 766, 1178, 1612
ScrFI CCNGG 2 cut(s) 182, 1235
SfaNI GCATC 5 cut(s) 934, 1181, 1190, 1267, 1367
Sfr274I CTCGAG 1 cut(s) 1084
SlaI CTCGAG 1 cut(s) 1084
SmlI CTYRAG 5 cut(s) 64, 160, 470, 517, 1084
SmoI CTYRAG 5 cut(s) 64, 160, 470, 517, 1084
Sse9I AATT 2 cut(s) 14, 928
SsiI CCGC 6 cut(s) 656, 765, 789, 947, 1188, 1289
SspMI CTAG 3 cut(s) 23, 255, 1568
StyD4I CCNGG 2 cut(s) 180, 1233
TaaI ACNGT 3 cut(s) 439, 445, 989
TaiI ACGT 3 cut(s) 1051, 1059, 1071
TasI AATT 2 cut(s) 14, 928
TatI WGTACW 1 cut(s) 164
TfiI GAWTC 4 cut(s) 110, 191, 749, 826
Tru1I TTAA 3 cut(s) 393, 518, 576
Tru9I TTAA 3 cut(s) 393, 518, 576
TscAI CASTG 2 cut(s) 51, 805
TseFI GTSAC 1 cut(s) 875
Tsp45I GTSAC 1 cut(s) 875
TspGWI ACGGA 4 cut(s) 95, 143, 742, 1168
TspRI CASTG 2 cut(s) 51, 805
Vha464I CTTAAG 1 cut(s) 517
XapI RAATTY 1 cut(s) 928
XhoI CTCGAG 1 cut(s) 1084
XmnI GAANNNNTTC 1 cut(s) 728
XspI CTAG 3 cut(s) 23, 255, 1568
ZraI GACGTC 1 cut(s) 1049
ZrmI AGTACT 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.