MD13G1069000.v1.1

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0015044
Physical Location & Seq
Forward (+)
4859546 .. 4861180
1635 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1069000.v1.1.491

Sequence Viewer

Length: 1635 bp
ATGAGAGAAGAAGCTCAACAGCAGGATCAGCTAGCAATGGCGACAGCAGAAGAGAAACTGCAGCAGCTCCGGTCCAAAGCCACGGAGCTTCTCCTGCGAGAAGAATGGCAGGAGTCCGTACAAGCATACTCTCACTTCATCACCCTCTGCCAATCCCACATCTCAAATTTCCCTCAAAACCCCAACCCCGACCCCGATCATCTGCCCAAGCTCCGAAAATCCCTCTGCCTTGCCCTCTCCAACCGGGCCGAAGCGCGATCCAGGCTCCGAGATTTCGCTGAAGCATTGAGGGATTGTGATCGGGCATTGGAAATCGAGAGGGCCCATTTCAAGACTCTTGTCTGCAAAGGCAAGATCTTGCTGAATCTGAACAGGTATTCCATGGCGCTGGACTACTTTCGAACAGCTCAGCTCGACCCGCGGGCTAACGGGAGCTCTGTGGACCTCGATGGGTACTTGCAGAAGTCCAAGAAGCTCGAGCTGATGTCTAGAACTGGAGCTTTTGATCTCTCTGAATGGGTTGTTAACGGGTTTCGTGGGAAGCCTCTGGAACCGGCTGAGTACATTGGTGCAGTGCAGATCAAGAAATCGGAGATTAGAGGGCGTGGACTGTTTGTGACGAAGAACATTGATGCCGGAACTTTGGTTTTGGTCACGAAAGCGGTTGCTACGGAGAGGGGAATTTTTCCTGGTCAAGATTTGGACGAGAATACACAATTGGTCATGTGGAAGAACTTCACTGAAAAGGTGATGGACTCCATGGCTAAATGTTTGAGAATCCGCGATTTGATTAGTACATTGTCGAGTGGGGAAGATGAGGATGAGCTTGAGGTCCCTGAGATCAATCGATTTAAGCCCGAGGCGAAGCACAATGGCGGCTGCCATAATGAGAAAGAGCATGATGCGAGCAGGATTTTGAGCATACTGGATGTCAATTCACTTGTTGAGGATGCAGTTTCTTCCAAGGTTTTGGGGAAGAACAACGATTACTACGGTGTTGGGCTGTGGGTGCTGGCTTCATTCATCAACCATTCATGTGTGCCGAATGCAAGACGTATGCATGTAGGAGATTATGTAATGGTTCATGCTTCTAGAGATGTCAAGGCCGGGGAGGAGATAACATTTGCATATTTTGATGTGCTTTCACCATTGGAAAAGCGCAACGAAAGTAGCAAGACATGGGGTTTTAGATGTAACTGCAAGAGGTGCAAGTTTGAGGAGAAACTGTATTCTAGAGAAGACTTGAGAGAGATTGAGATGGGTCTCGAAAGAGGGATGGATGCCGGCGCAGTAGTTTACAAGCTGGAGGAAGGCATGAGGAGGTGGATGGTGAAGGAAAGGGAGAAAGGGTACTTGAGAGCATCGTTTTGGGAAGCATGCTCTCAGGCTTATTACTCAGAGAAGTCGGCAAAGGGGTGGGGAAGACGCATACCGCCAATGGAGACGGTGGTTGATAGCGTTGTGGAAGCGGTGGGAAGCGACGAGAGGGTGCTGAAGATGGTGGCGGAGAAGTTGAAGGGACGTGGTGGAGGAATGGTGGAAATGGAGAGAGCTATGAAGTTGGGAAGAGGGGTGTATGGGAAAGTAGTGAAAAAGCAAGCAATGAAGACTCTTCTTGGTTTAGACATTCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

545

Amino Acids

61.79

Weight (kDa)

8.15

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 201 - 377 7e-14 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26760
fragaria_vesca FvH4_4g31050
malus_domestica MD13G1069000.v1.1
prunus_persica Prupe.1G278000_v2.0.a1
pyrus_communis pycom13g06180 pycom16g06040
rosa_chinensis RchiOBHm_Chr4g0439431
rosa_laevigata RLG00000006273
rosa_multiflora Rmu_sc0007276.1_g000002
rosa_roxburghii Rroxscaffold_5G00380340
rosa_rugosa Rorug04G0318100
rosa_samantha Rh4AG369400 Rh4BG381200 Rh4CG395800 Rh4DG375900
rosa_wichuraiana Rw4G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 3 cut(s) 256, 421, 783
AciI CCGC 8 cut(s) 419, 421, 662, 781, 876, 1433, 1469, 1505
AclWI GGATC 2 cut(s) 33, 252
AcsI RAATTY 2 cut(s) 166, 681
AcuI CTGAAG 2 cut(s) 300, 1514
AfaI GTAC 5 cut(s) 120, 455, 563, 796, 1352
AgsI TTSAA 2 cut(s) 331, 1516
AjiI CACGTC 1 cut(s) 1523
AjnI CCWGG 2 cut(s) 260, 688
AjuI GAANNNNNNNTTGG 2 cut(s) 701, 733
AloI GAACNNNNNNTCC 2 cut(s) 362, 394
Alw21I GWGCWC 1 cut(s) 437
Alw26I GTCTC 2 cut(s) 1268, 1436
AlwI GGATC 2 cut(s) 33, 252
Ama87I CYCGRG 2 cut(s) 476, 857
AoxI GGCC 3 cut(s) 246, 321, 1104
ApaI GGGCCC 1 cut(s) 325
ApeKI GCWGC 3 cut(s) 61, 64, 879
ApoI RAATTY 2 cut(s) 166, 681
Asp700I GAANNNNTTC 1 cut(s) 734
AspLEI GCGC 4 cut(s) 256, 388, 1161, 1289
AspS9I GGNCC 6 cut(s) 72, 246, 321, 322, 442, 832
AsuC2I CCSGG 2 cut(s) 245, 1108
AsuHPI GGTGA 4 cut(s) 133, 760, 1137, 1342
AsuII TTCGAA 1 cut(s) 400
AsuNHI GCTAGC 1 cut(s) 31
AvaI CYCGRG 2 cut(s) 476, 857
AvaII GGWCC 3 cut(s) 72, 442, 832
BaeGI GKGCMC 1 cut(s) 325
BanII GRGCYC 2 cut(s) 325, 437
BbsI GAAGAC 3 cut(s) 1245, 1429, 1613
Bbv12I GWGCWC 1 cut(s) 437
BbvI GCAGC 3 cut(s) 73, 76, 866
BccI CCATC 6 cut(s) 443, 745, 1252, 1270, 1321, 1492
BciT130I CCWGG 2 cut(s) 262, 690
BcnI CCSGG 2 cut(s) 245, 1108
BcoDI GTCTC 2 cut(s) 1268, 1436
BfaI CTAG 4 cut(s) 32, 489, 1092, 1233
BfmI CTRYAG 1 cut(s) 59
BfoI RGCGCY 1 cut(s) 389
BglII AGATCT 1 cut(s) 354
BisI GCNGC 4 cut(s) 62, 65, 877, 880
BlpI GCTNAGC 1 cut(s) 408
BlsI GCNGC 4 cut(s) 63, 66, 878, 881
Bme1390I CCNGG 4 cut(s) 245, 262, 690, 1108
Bme18I GGWCC 3 cut(s) 72, 442, 832
BmeT110I CYCGRG 2 cut(s) 476, 857
BmgBI CACGTC 1 cut(s) 1523
BmgT120I GGNCC 6 cut(s) 72, 246, 321, 322, 442, 832
BmiI GGNNCC 4 cut(s) 266, 323, 552, 834
BmrFI CCNGG 4 cut(s) 245, 262, 690, 1108
BmsI GCATC 5 cut(s) 622, 892, 940, 1270, 1370
BmtI GCTAGC 1 cut(s) 35
BoxI GACNNNNGTC 1 cut(s) 338
BpiI GAAGAC 3 cut(s) 1245, 1429, 1613
BpmI CTGGAG 2 cut(s) 516, 1325
Bpu1102I GCTNAGC 1 cut(s) 408
Bpu14I TTCGAA 1 cut(s) 400
BpuEI CTTGAG 3 cut(s) 848, 1264, 1375
BpuMI CCSGG 2 cut(s) 245, 1108
Bsa29I ATCGAT 1 cut(s) 847
BsaBI GATNNNNATC 1 cut(s) 297
BsaI GGTCTC 1 cut(s) 1268
BsaJI CCNNGG 7 cut(s) 81, 381, 419, 759, 858, 963, 1107
BsaWI WCCGGW 1 cut(s) 69
BsaXI ACNNNNNCTCC 8 cut(s) 1059, 1089, 1211, 1241, 1334, 1364, 1521, 1551
Bse118I RCCGGY 2 cut(s) 553, 1283
Bse1I ACTGG 2 cut(s) 499, 930
Bse3DI GCAATG 2 cut(s) 42, 1608
Bse8I GATNNNNATC 1 cut(s) 297
BseBI CCWGG 2 cut(s) 262, 690
BseCI ATCGAT 1 cut(s) 847
BseDI CCNNGG 7 cut(s) 81, 381, 419, 759, 858, 963, 1107
BseGI GGATG 6 cut(s) 826, 934, 955, 1281, 1285, 1332
BseJI GATNNNNATC 1 cut(s) 297
BseMI GCAATG 2 cut(s) 42, 1608
BseMII CTCAG 5 cut(s) 422, 549, 828, 1397, 1410
BseNI ACTGG 2 cut(s) 499, 930
BseRI GAGGAG 3 cut(s) 1127, 1232, 1333
BseSI GKGCMC 1 cut(s) 325
BseXI GCAGC 3 cut(s) 73, 76, 866
BsgI GTGCAG 2 cut(s) 591, 596
Bsh1236I CGCG 3 cut(s) 256, 421, 783
BshFI GGCC 3 cut(s) 248, 323, 1106
BshVI ATCGAT 1 cut(s) 847
BsiHKAI GWGCWC 1 cut(s) 437
BsiHKCI CYCGRG 2 cut(s) 476, 857
BsiSI CCGG 6 cut(s) 70, 244, 554, 636, 1107, 1284
BslFI GGGAC 2 cut(s) 818, 1533
BsmAI GTCTC 2 cut(s) 1268, 1436
BsmBI CGTCTC 1 cut(s) 1436
BsmFI GGGAC 2 cut(s) 818, 1533
BsmI GAATGC 1 cut(s) 1051
BsnI GGCC 3 cut(s) 248, 323, 1106
Bso31I GGTCTC 1 cut(s) 1268
BsoBI CYCGRG 2 cut(s) 476, 857
Bsp119I TTCGAA 1 cut(s) 400
Bsp120I GGGCCC 1 cut(s) 321
Bsp1286I GDGCHC 2 cut(s) 325, 437
Bsp143I GATC 8 cut(s) 25, 196, 257, 298, 354, 505, 579, 840
Bsp1720I GCTNAGC 1 cut(s) 408
Bsp19I CCATGG 2 cut(s) 381, 759
BspACI CCGC 8 cut(s) 419, 421, 662, 781, 876, 1433, 1469, 1505
BspANI GGCC 3 cut(s) 248, 323, 1106
BspCNI CTCAG 5 cut(s) 421, 550, 829, 1396, 1409
BspDI ATCGAT 1 cut(s) 847
BspFNI CGCG 3 cut(s) 256, 421, 783
BspLI GGNNCC 4 cut(s) 266, 323, 552, 834
BspMAI CTGCAG 1 cut(s) 63
BspOI GCTAGC 1 cut(s) 35
BspPI GGATC 2 cut(s) 33, 252
BspT104I TTCGAA 1 cut(s) 400
BspTNI GGTCTC 1 cut(s) 1268
BsrDI GCAATG 2 cut(s) 42, 1608
BsrFI RCCGGY 2 cut(s) 553, 1283
BsrI ACTGG 2 cut(s) 499, 930
BssAI RCCGGY 2 cut(s) 553, 1283
BssECI CCNNGG 7 cut(s) 81, 381, 419, 759, 858, 963, 1107
BssMI GATC 8 cut(s) 25, 196, 257, 298, 354, 505, 579, 840
BssT1I CCWWGG 3 cut(s) 381, 759, 963
Bst2UI CCWGG 2 cut(s) 262, 690
Bst4CI ACNGT 4 cut(s) 612, 995, 1227, 1447
Bst6I CTCTTC 3 cut(s) 45, 1561, 1617
BstAPI GCANNNNNTGC 1 cut(s) 1206
BstBI TTCGAA 1 cut(s) 400
BstC8I GCNNGC 7 cut(s) 33, 423, 907, 1014, 1285, 1378, 1599
BstDEI CTNAG 5 cut(s) 408, 558, 837, 1383, 1396
BstDSI CCRYGG 4 cut(s) 81, 381, 419, 759
BstF5I GGATG 6 cut(s) 826, 934, 955, 1281, 1285, 1332
BstFNI CGCG 3 cut(s) 256, 421, 783
BstH2I RGCGCY 1 cut(s) 389
BstHHI GCGC 4 cut(s) 256, 388, 1161, 1289
BstKTI GATC 8 cut(s) 28, 199, 260, 301, 357, 508, 582, 843
BstMAI GTCTC 2 cut(s) 1268, 1436
BstMBI GATC 8 cut(s) 25, 196, 257, 298, 354, 505, 579, 840
BstMWI GCNNNNNNNGC 6 cut(s) 28, 94, 262, 418, 1009, 1206
BstNI CCWGG 2 cut(s) 262, 690
BstNSI RCATGY 2 cut(s) 1064, 1380
BstPAI GACNNNNGTC 1 cut(s) 338
BstSCI CCNGG 4 cut(s) 243, 260, 688, 1106
BstSFI CTRYAG 1 cut(s) 59
BstSLI GKGCMC 1 cut(s) 325
BstUI CGCG 3 cut(s) 256, 421, 783
BstV1I GCAGC 3 cut(s) 73, 76, 866
BstV2I GAAGAC 3 cut(s) 1245, 1429, 1613
BstX2I RGATCY 1 cut(s) 354
BstXI CCANNNNNNTGG 2 cut(s) 388, 970
BstYI RGATCY 1 cut(s) 354
Bsu15I ATCGAT 1 cut(s) 847
BsuRI GGCC 3 cut(s) 248, 323, 1106
BsuTUI ATCGAT 1 cut(s) 847
BtgI CCRYGG 4 cut(s) 81, 381, 419, 759
BtrI CACGTC 1 cut(s) 1523
BtsCI GGATG 6 cut(s) 826, 934, 955, 1281, 1285, 1332
BtsI GCAGTG 1 cut(s) 579
BtsIMutI CAGTG 2 cut(s) 579, 738
Cac8I GCNNGC 7 cut(s) 33, 423, 907, 1014, 1285, 1378, 1599
CfoI GCGC 4 cut(s) 256, 388, 1161, 1289
Cfr10I RCCGGY 2 cut(s) 553, 1283
Cfr13I GGNCC 6 cut(s) 72, 246, 321, 322, 442, 832
Cfr42I CCGCGG 1 cut(s) 422
ClaI ATCGAT 1 cut(s) 847
CseI GACGC 1 cut(s) 1434
Csp6I GTAC 5 cut(s) 119, 454, 562, 795, 1351
CviQI GTAC 5 cut(s) 119, 454, 562, 795, 1351
DdeI CTNAG 5 cut(s) 408, 558, 837, 1383, 1396
DpnI GATC 8 cut(s) 27, 198, 259, 300, 356, 507, 581, 842
DpnII GATC 8 cut(s) 25, 196, 257, 298, 354, 505, 579, 840
Eam1104I CTCTTC 3 cut(s) 45, 1561, 1617
EarI CTCTTC 3 cut(s) 45, 1561, 1617
EciI GGCGGA 1 cut(s) 1520
Ecl136II GAGCTC 1 cut(s) 435
Eco130I CCWWGG 3 cut(s) 381, 759, 963
Eco24I GRGCYC 2 cut(s) 325, 437
Eco31I GGTCTC 1 cut(s) 1268
Eco47I GGWCC 3 cut(s) 72, 442, 832
Eco53kI GAGCTC 1 cut(s) 435
Eco57I CTGAAG 2 cut(s) 300, 1514
Eco88I CYCGRG 2 cut(s) 476, 857
EcoICRI GAGCTC 1 cut(s) 435
EcoO109I RGGNCCY 2 cut(s) 321, 832
EcoRII CCWGG 2 cut(s) 260, 688
EcoT14I CCWWGG 3 cut(s) 381, 759, 963
EcoT22I ATGCAT 1 cut(s) 1062
EcoT38I GRGCYC 2 cut(s) 325, 437
ErhI CCWWGG 3 cut(s) 381, 759, 963
Esp3I CGTCTC 1 cut(s) 1436
FaqI GGGAC 2 cut(s) 818, 1533
FauI CCCGC 2 cut(s) 414, 426
Fnu4HI GCNGC 4 cut(s) 62, 65, 877, 880
FokI GGATG 6 cut(s) 833, 941, 962, 1288, 1292, 1339
FriOI GRGCYC 2 cut(s) 325, 437
Fsp4HI GCNGC 4 cut(s) 62, 65, 877, 880
FspBI CTAG 4 cut(s) 32, 489, 1092, 1233
GlaI GCGC 4 cut(s) 255, 387, 1160, 1288
GluI GCNGC 4 cut(s) 62, 65, 877, 880
GsuI CTGGAG 2 cut(s) 516, 1325
HaeII RGCGCY 1 cut(s) 389
HaeIII GGCC 3 cut(s) 248, 323, 1106
HapII CCGG 6 cut(s) 70, 244, 554, 636, 1107, 1284
HgaI GACGC 1 cut(s) 1434
HhaI GCGC 4 cut(s) 256, 388, 1161, 1289
Hin6I GCGC 4 cut(s) 254, 386, 1159, 1287
HinP1I GCGC 4 cut(s) 254, 386, 1159, 1287
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HinfI GANTC 6 cut(s) 113, 334, 364, 755, 777, 1609
HpaI GTTAAC 1 cut(s) 526
HpaII CCGG 6 cut(s) 70, 244, 554, 636, 1107, 1284
HphI GGTGA 4 cut(s) 133, 760, 1137, 1342
Hpy166II GTNNAC 4 cut(s) 442, 526, 608, 1297
Hpy188I TCNGA 6 cut(s) 215, 269, 369, 514, 592, 1399
Hpy8I GTNNAC 4 cut(s) 442, 526, 608, 1297
Hpy99I CGWCG 1 cut(s) 1484
HpyAV CCTTC 3 cut(s) 1304, 1327, 1510
HpyCH4III ACNGT 4 cut(s) 612, 995, 1227, 1447
HpyCH4IV ACGT 2 cut(s) 1054, 1522
HpyF10VI GCNNNNNNNGC 6 cut(s) 28, 94, 262, 418, 1009, 1206
HpyF3I CTNAG 5 cut(s) 408, 558, 837, 1383, 1396
HpySE526I ACGT 2 cut(s) 1054, 1522
HspAI GCGC 4 cut(s) 254, 386, 1159, 1287
KroI GCCGGC 1 cut(s) 1283
KroNI GCCGGC 1 cut(s) 1285
KspAI GTTAAC 1 cut(s) 526
KspI CCGCGG 1 cut(s) 422
Kzo9I GATC 8 cut(s) 25, 196, 257, 298, 354, 505, 579, 840
LmnI GCTCC 6 cut(s) 72, 85, 216, 270, 432, 497
Lsp1109I GCAGC 3 cut(s) 73, 76, 866
LweI GCATC 5 cut(s) 622, 892, 940, 1270, 1370
MaeI CTAG 4 cut(s) 32, 489, 1092, 1233
MaeII ACGT 2 cut(s) 1054, 1522
MaeIII GTNAC 3 cut(s) 616, 652, 1193
MalI GATC 8 cut(s) 27, 198, 259, 300, 356, 507, 581, 842
MboI GATC 8 cut(s) 25, 196, 257, 298, 354, 505, 579, 840
MfeI CAATTG 1 cut(s) 716
MflI RGATCY 1 cut(s) 354
MhlI GDGCHC 2 cut(s) 325, 437
MluCI AATT 4 cut(s) 166, 681, 716, 934
MlyI GAGTC 4 cut(s) 122, 328, 749, 1603
MmeI TCCRAC 1 cut(s) 264
Mph1103I ATGCAT 1 cut(s) 1062
MroNI GCCGGC 1 cut(s) 1283
MroXI GAANNNNTTC 1 cut(s) 734
MseI TTAA 3 cut(s) 525, 852, 1633
MslI CAYNNNNRTG 1 cut(s) 1035
MspA1I CMGCKG 1 cut(s) 421
MspI CCGG 6 cut(s) 70, 244, 554, 636, 1107, 1284
MspR9I CCNGG 4 cut(s) 245, 262, 690, 1108
MunI CAATTG 1 cut(s) 716
Mva1269I GAATGC 1 cut(s) 1051
MvaI CCWGG 2 cut(s) 262, 690
MvnI CGCG 3 cut(s) 256, 421, 783
MwoI GCNNNNNNNGC 6 cut(s) 28, 94, 262, 418, 1009, 1206
NaeI GCCGGC 1 cut(s) 1285
NciI CCSGG 2 cut(s) 245, 1108
NcoI CCATGG 2 cut(s) 381, 759
NdeII GATC 8 cut(s) 25, 196, 257, 298, 354, 505, 579, 840
NgoMIV GCCGGC 1 cut(s) 1283
NheI GCTAGC 1 cut(s) 31
NlaIV GGNNCC 4 cut(s) 266, 323, 552, 834
NmuCI GTSAC 2 cut(s) 616, 652
NsiI ATGCAT 1 cut(s) 1062
NspI RCATGY 2 cut(s) 1064, 1380
NspV TTCGAA 1 cut(s) 400
PaeI GCATGC 1 cut(s) 1380
PaeR7I CTCGAG 1 cut(s) 476
PctI GAATGC 1 cut(s) 1051
PdiI GCCGGC 1 cut(s) 1285
PdmI GAANNNNTTC 1 cut(s) 734
PfeI GAWTC 2 cut(s) 364, 777
PkrI GCNGC 4 cut(s) 63, 66, 878, 881
PleI GAGTC 4 cut(s) 121, 328, 749, 1603
PpsI GAGTC 4 cut(s) 121, 328, 749, 1603
PpuMI RGGWCCY 1 cut(s) 832
PshAI GACNNNNGTC 1 cut(s) 338
Psp124BI GAGCTC 1 cut(s) 437
Psp5II RGGWCCY 1 cut(s) 832
Psp6I CCWGG 2 cut(s) 260, 688
PspGI CCWGG 2 cut(s) 260, 688
PspN4I GGNNCC 4 cut(s) 266, 323, 552, 834
PspOMI GGGCCC 1 cut(s) 321
PspPI GGNCC 6 cut(s) 72, 246, 321, 322, 442, 832
PspPPI RGGWCCY 1 cut(s) 832
PspXI VCTCGAGB 1 cut(s) 476
PsrI GAACNNNNNNTAC 2 cut(s) 971, 1003
PstI CTGCAG 1 cut(s) 63
PsuI RGATCY 1 cut(s) 354
RsaI GTAC 5 cut(s) 120, 455, 563, 796, 1352
RsaNI GTAC 5 cut(s) 119, 454, 562, 795, 1351
RseI CAYNNNNRTG 1 cut(s) 1035
SacI GAGCTC 1 cut(s) 437
SacII CCGCGG 1 cut(s) 422
SaqAI TTAA 3 cut(s) 525, 852, 1633
SatI GCNGC 4 cut(s) 62, 65, 877, 880
Sau3AI GATC 8 cut(s) 25, 196, 257, 298, 354, 505, 579, 840
Sau96I GGNCC 6 cut(s) 72, 246, 321, 322, 442, 832
SchI GAGTC 4 cut(s) 122, 328, 749, 1603
ScrFI CCNGG 4 cut(s) 245, 262, 690, 1108
SduI GDGCHC 2 cut(s) 325, 437
SfaNI GCATC 5 cut(s) 622, 892, 940, 1270, 1370
SfcI CTRYAG 1 cut(s) 59
Sfr274I CTCGAG 1 cut(s) 476
Sfr303I CCGCGG 1 cut(s) 422
SfuI TTCGAA 1 cut(s) 400
SgrBI CCGCGG 1 cut(s) 422
SinI GGWCC 3 cut(s) 72, 442, 832
SlaI CTCGAG 1 cut(s) 476
SmiMI CAYNNNNRTG 1 cut(s) 1035
SmlI CTYRAG 4 cut(s) 476, 827, 1243, 1354
SmoI CTYRAG 4 cut(s) 476, 827, 1243, 1354
SphI GCATGC 1 cut(s) 1380
Sse9I AATT 4 cut(s) 166, 681, 716, 934
SsiI CCGC 8 cut(s) 419, 421, 662, 781, 876, 1433, 1469, 1505
SspMI CTAG 4 cut(s) 32, 489, 1092, 1233
SstI GAGCTC 1 cut(s) 437
StyD4I CCNGG 4 cut(s) 243, 260, 688, 1106
StyI CCWWGG 3 cut(s) 381, 759, 963
TaaI ACNGT 4 cut(s) 612, 995, 1227, 1447
TaiI ACGT 2 cut(s) 1057, 1525
TaqI TCGA 8 cut(s) 315, 400, 414, 447, 477, 803, 847, 1266
TasI AATT 4 cut(s) 166, 681, 716, 934
TatI WGTACW 2 cut(s) 561, 794
TauI GCSGC 1 cut(s) 879
TfiI GAWTC 2 cut(s) 364, 777
Tru1I TTAA 3 cut(s) 525, 852, 1633
Tru9I TTAA 3 cut(s) 525, 852, 1633
TscAI CASTG 2 cut(s) 579, 745
TseFI GTSAC 2 cut(s) 616, 652
TseI GCWGC 3 cut(s) 61, 64, 879
Tsp45I GTSAC 2 cut(s) 616, 652
TspDTI ATGAA 7 cut(s) 127, 1008, 1012, 1023, 1073, 1571, 1619
TspGWI ACGGA 3 cut(s) 98, 106, 686
TspRI CASTG 2 cut(s) 579, 745
VpaK11BI GGWCC 3 cut(s) 72, 442, 832
XapI RAATTY 2 cut(s) 166, 681
XbaI TCTAGA 3 cut(s) 488, 1091, 1232
XceI RCATGY 2 cut(s) 1064, 1380
XhoI CTCGAG 1 cut(s) 476
XmnI GAANNNNTTC 1 cut(s) 734
XspI CTAG 4 cut(s) 32, 489, 1092, 1233
Zsp2I ATGCAT 1 cut(s) 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.