Rroxscaffold_5G00380340

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0015044
Physical Location & Seq
Forward (+)
60542059 .. 60544065
2007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00380340.1

Sequence Viewer

Length: 1614 bp
ATGAGAGAAACCCAACAACAACAACAGCTAGAAATGGCAGAAGAACTAATGCAGCAGCTCAGATCCAAAGCCACAGAGCTCTTACTCAGAGAAGAATGGAGCGAATCCATACAAGTCTATTCTCAGTTCATCAATCTCTGCCAACACCACATCAATGAAACCACACCAGACAACCTCCCAAAGCTCCACAAGTCCCTCTGCCTGGCCCTATCGAACCGAGCCGAAGCGCGATCCAGACTCCGAGACTATGCACAAGCCTTGACGGATTGTGATGAGGCACTGAAAATTGAGAGCACCCATTTCAAGACTCTCATCTGCAAAGGTAAGATTTTACTGAATTTGAACAGGTACTCCATGGCGTTGACTTGCTTCAGAACTGCTCAGCTTGATCCTCAGGCAAATGGGAGCTCGGTTGGGCTTAATGGGTACTTGCAGAAATGCAAGAAGCTCGAACTGATGTCGAAAACTGGAGCTTTCGATATGTCTGAGTGGGTGATCAATGGGTTTCGAGCTAAGCCTCCGGAGTCGGCTGAGTACATTGGGGCGGTGGAGATGAGGAAGTCGGGGATTAGAGGGCGTGGTTTGTTTGCGACGAAGAATATGGAAGCTGGGAGTTTGGTGCTGATTAATAAAGCAGTTGCAACGGAGAGAGGTATTTTGCCGGGTCAAGATTTGGATGAGAATGCCCAATTAGTTATGTGGAAGACTTTTACTGAGAAAGTGATGGATTCCGTGGCCAAATGTTCGAGAACATGTGGTTTGATTAGTACTTTGTCGAGCGGTGAAGATGAGGATGGGCTTGAGGTGCCTGAGATTAATCTGTTTAAGCCTGACTCGGAGCACTTTGGGTACTCAAATGAGAAGAAGCTTGATGCGAGTACGATTTTAAGTATTTTGGATGTCAATTCGATTGTTGAGGATTCCATTTCGTCAAAGGTTTTGGGGAAGAACAGTGATTACTATGGTGTTGGGCTCTGGGTACTTGCTTCATTTATCAACCATTCATGTATTCCCAATGCAAGGCGTTTGCATGTTGGGGACTATGTGATTGTTCATGCTTCAAGAGATGTCAAGGCTGGTGAGGAGCTAACATTTGCATATTTCGATGTGCTGAATCCATTGGAAAAGCGCAACGAAATGTCAAAGACTTGGGGGTTTAGGTGCAACTGCAGGAGGTGTAAGTTTGAGGCTGAACTATGTTCGAGGCAGGAAGGCATTGGAGAGATTGAGATGGGTTTCGAAAGAGGGATGGATTCTGGTGCTGCGGTCTATAGGCTCGAGGAAGGCATGAGAAAATGGAAGGTGAAGGAAAAGGAAAAAGGGTACTTGAGAGCTTCATTTTGGGCTGCATATGGCTCAGAGAAGTTGATGAGAAGTTGGGGAAGACGGATCCCAATGATGGAGTCCGTGGTTGATAGCATTGTGGAAGCTGTGGGAAGTGATGAGAGGGTGTTGAAGATGGTGGTGGAGAAGATAAAGAAAGGTAATGGTGGCAGTTCAGTGGTGGAAATAGAAAGAGCTTTGAAGTTGGGAAGAGGAGTTTATGGAAAAGTAATGAAGAAGCAAGCAATGAAGAGTCTTCTTGGTCTCGGCATTCTTGAACCCAGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

537

Amino Acids

60.37

Weight (kDa)

8.1

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 192 - 367 3.3e-14 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26760
fragaria_vesca FvH4_4g31050
malus_domestica MD13G1069000.v1.1
prunus_persica Prupe.1G278000_v2.0.a1
pyrus_communis pycom13g06180 pycom16g06040
rosa_chinensis RchiOBHm_Chr4g0439431
rosa_laevigata RLG00000006273
rosa_multiflora Rmu_sc0007276.1_g000002
rosa_roxburghii Rroxscaffold_5G00380340
rosa_rugosa Rorug04G0318100
rosa_samantha Rh4AG369400 Rh4BG381200 Rh4CG395800 Rh4DG375900
rosa_wichuraiana Rw4G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 805
AccBSI CCGCTC 1 cut(s) 780
AccII CGCG 1 cut(s) 229
AccIII TCCGGA 1 cut(s) 520
AciI CCGC 3 cut(s) 545, 780, 1265
AclWI GGATC 5 cut(s) 57, 225, 383, 1384, 1397
AcoI YGGCCR 1 cut(s) 735
AcsI RAATTY 1 cut(s) 337
AcuI CTGAAG 1 cut(s) 355
AfaI GTAC 8 cut(s) 350, 428, 536, 769, 851, 880, 981, 1325
AfiI CCNNNNNNNGG 3 cut(s) 202, 1020, 1399
AflIII ACRYGT 1 cut(s) 752
AgsI TTSAA 6 cut(s) 304, 343, 1062, 1456, 1525, 1601
AjnI CCWGG 1 cut(s) 201
AloI GAACNNNNNNTCC 2 cut(s) 335, 367
Alw21I GWGCWC 4 cut(s) 81, 296, 410, 843
Alw26I GTCTC 2 cut(s) 237, 1592
AlwI GGATC 5 cut(s) 57, 225, 383, 1384, 1397
Ama87I CYCGRG 1 cut(s) 1277
Aor13HI TCCGGA 1 cut(s) 520
AoxI GGCC 2 cut(s) 204, 735
ApeKI GCWGC 4 cut(s) 52, 55, 1262, 1346
ApoI RAATTY 1 cut(s) 337
AseI ATTAAT 2 cut(s) 627, 816
AspLEI GCGC 2 cut(s) 229, 1131
AspS9I GGNCC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 663
AsuHPI GGTGA 4 cut(s) 505, 794, 1091, 1315
AsuII TTCGAA 1 cut(s) 1239
AvaI CYCGRG 1 cut(s) 1277
AxyI CCTNAGG 1 cut(s) 393
BalI TGGCCA 1 cut(s) 737
BamHI GGATCC 1 cut(s) 1389
BanI GGYRCC 1 cut(s) 805
BanII GRGCYC 3 cut(s) 81, 410, 975
BbsI GAAGAC 3 cut(s) 710, 1390, 1571
Bbv12I GWGCWC 4 cut(s) 81, 296, 410, 843
BbvI GCAGC 4 cut(s) 64, 67, 1249, 1333
BccI CCATC 6 cut(s) 718, 788, 1225, 1243, 1393, 1453
BcgI CGANNNNNNTGC 2 cut(s) 430, 464
BciT130I CCWGG 1 cut(s) 203
BclI TGATCA 1 cut(s) 495
BcnI CCSGG 1 cut(s) 663
BcoDI GTCTC 2 cut(s) 237, 1592
BfaI CTAG 1 cut(s) 29
BfmI CTRYAG 2 cut(s) 1168, 1270
BisI GCNGC 4 cut(s) 53, 56, 1263, 1347
BlpI GCTNAGC 2 cut(s) 381, 513
BlsI GCNGC 4 cut(s) 54, 57, 1264, 1348
BmcAI AGTACT 1 cut(s) 769
Bme1390I CCNGG 2 cut(s) 203, 663
BmeT110I CYCGRG 1 cut(s) 1277
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 2 cut(s) 807, 1391
BmrFI CCNGG 2 cut(s) 203, 663
BmsI GCATC 1 cut(s) 862
BpiI GAAGAC 3 cut(s) 710, 1390, 1571
BpmI CTGGAG 1 cut(s) 489
Bpu1102I GCTNAGC 2 cut(s) 381, 513
Bpu14I TTCGAA 1 cut(s) 1239
BpuEI CTTGAG 2 cut(s) 821, 1348
BpuMI CCSGG 1 cut(s) 663
BsaI GGTCTC 1 cut(s) 1592
BsaJI CCNNGG 3 cut(s) 354, 732, 1407
BsaWI WCCGGW 1 cut(s) 520
BsaXI ACNNNNNCTCC 2 cut(s) 335, 365
Bsc4I CCNNNNNNNGG 3 cut(s) 202, 1020, 1399
Bse1I ACTGG 1 cut(s) 472
Bse21I CCTNAGG 1 cut(s) 393
Bse3DI GCAATG 1 cut(s) 1575
BseAI TCCGGA 1 cut(s) 520
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 3 cut(s) 354, 732, 1407
BseGI GGATG 4 cut(s) 682, 799, 904, 1254
BseLI CCNNNNNNNGG 3 cut(s) 202, 1020, 1399
BseMI GCAATG 1 cut(s) 1575
BseNI ACTGG 1 cut(s) 472
BseRI GAGGAG 2 cut(s) 1097, 1551
BseXI GCAGC 4 cut(s) 64, 67, 1249, 1333
BseYI CCCAGC 2 cut(s) 608, 1604
Bsh1236I CGCG 1 cut(s) 229
BshFI GGCC 2 cut(s) 206, 737
BshNI GGYRCC 1 cut(s) 805
BsiHKAI GWGCWC 4 cut(s) 81, 296, 410, 843
BsiHKCI CYCGRG 1 cut(s) 1277
BsiSI CCGG 2 cut(s) 521, 662
BslFI GGGAC 2 cut(s) 178, 1052
BslI CCNNNNNNNGG 3 cut(s) 202, 1020, 1399
BsmAI GTCTC 2 cut(s) 237, 1592
BsmFI GGGAC 2 cut(s) 178, 1052
BsmI GAATGC 2 cut(s) 688, 1593
BsnI GGCC 2 cut(s) 206, 737
Bso31I GGTCTC 1 cut(s) 1592
BsoBI CYCGRG 1 cut(s) 1277
Bsp119I TTCGAA 1 cut(s) 1239
Bsp1286I GDGCHC 5 cut(s) 81, 296, 410, 843, 975
Bsp13I TCCGGA 1 cut(s) 520
Bsp143I GATC 5 cut(s) 62, 230, 388, 495, 1389
Bsp1720I GCTNAGC 2 cut(s) 381, 513
Bsp19I CCATGG 1 cut(s) 354
BspACI CCGC 3 cut(s) 545, 780, 1265
BspANI GGCC 2 cut(s) 206, 737
BspEI TCCGGA 1 cut(s) 520
BspFNI CGCG 1 cut(s) 229
BspLI GGNNCC 2 cut(s) 807, 1391
BspMAI CTGCAG 1 cut(s) 1172
BspPI GGATC 5 cut(s) 57, 225, 383, 1384, 1397
BspT104I TTCGAA 1 cut(s) 1239
BspT107I GGYRCC 1 cut(s) 805
BspTNI GGTCTC 1 cut(s) 1592
BsrBI CCGCTC 1 cut(s) 780
BsrDI GCAATG 1 cut(s) 1575
BsrI ACTGG 1 cut(s) 472
BssECI CCNNGG 3 cut(s) 354, 732, 1407
BssMI GATC 5 cut(s) 62, 230, 388, 495, 1389
BssT1I CCWWGG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 953
Bst6I CTCTTC 2 cut(s) 1528, 1568
BstBI TTCGAA 1 cut(s) 1239
BstC8I GCNNGC 1 cut(s) 1566
BstDSI CCRYGG 3 cut(s) 354, 732, 1407
BstF5I GGATG 4 cut(s) 682, 799, 904, 1254
BstFNI CGCG 1 cut(s) 229
BstHHI GCGC 2 cut(s) 229, 1131
BstKTI GATC 5 cut(s) 65, 233, 391, 498, 1392
BstMAI GTCTC 2 cut(s) 237, 1592
BstMBI GATC 5 cut(s) 62, 230, 388, 495, 1389
BstMWI GCNNNNNNNGC 1 cut(s) 805
BstNI CCWGG 1 cut(s) 203
BstNSI RCATGY 2 cut(s) 756, 1034
BstSCI CCNGG 2 cut(s) 201, 661
BstSFI CTRYAG 2 cut(s) 1168, 1270
BstUI CGCG 1 cut(s) 229
BstV1I GCAGC 4 cut(s) 64, 67, 1249, 1333
BstV2I GAAGAC 3 cut(s) 710, 1390, 1571
BstX2I RGATCY 2 cut(s) 62, 1389
BstYI RGATCY 2 cut(s) 62, 1389
Bsu36I CCTNAGG 1 cut(s) 393
BsuRI GGCC 2 cut(s) 206, 737
BtgI CCRYGG 3 cut(s) 354, 732, 1407
BtsCI GGATG 4 cut(s) 682, 799, 904, 1254
BtsIMutI CAGTG 3 cut(s) 278, 958, 1506
Cac8I GCNNGC 1 cut(s) 1566
CfoI GCGC 2 cut(s) 229, 1131
Cfr13I GGNCC 1 cut(s) 205
Csp6I GTAC 8 cut(s) 349, 427, 535, 768, 850, 879, 980, 1324
CviAII CATG 6 cut(s) 355, 753, 1005, 1031, 1055, 1288
CviQI GTAC 8 cut(s) 349, 427, 535, 768, 850, 879, 980, 1324
DpnI GATC 5 cut(s) 64, 232, 390, 497, 1391
DpnII GATC 5 cut(s) 62, 230, 388, 495, 1389
EaeI YGGCCR 1 cut(s) 735
Eam1104I CTCTTC 2 cut(s) 1528, 1568
EarI CTCTTC 2 cut(s) 1528, 1568
Ecl136II GAGCTC 2 cut(s) 79, 408
Eco130I CCWWGG 1 cut(s) 354
Eco24I GRGCYC 3 cut(s) 81, 410, 975
Eco31I GGTCTC 1 cut(s) 1592
Eco53kI GAGCTC 2 cut(s) 79, 408
Eco57I CTGAAG 1 cut(s) 355
Eco81I CCTNAGG 1 cut(s) 393
Eco88I CYCGRG 1 cut(s) 1277
EcoICRI GAGCTC 2 cut(s) 79, 408
EcoRII CCWGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 354
EcoT38I GRGCYC 3 cut(s) 81, 410, 975
ErhI CCWWGG 1 cut(s) 354
FaeI CATG 6 cut(s) 358, 756, 1008, 1034, 1058, 1291
FaqI GGGAC 2 cut(s) 178, 1052
FatI CATG 6 cut(s) 354, 752, 1004, 1030, 1054, 1287
FauNDI CATATG 1 cut(s) 1351
FbaI TGATCA 1 cut(s) 495
Fnu4HI GCNGC 4 cut(s) 53, 56, 1263, 1347
FokI GGATG 4 cut(s) 689, 806, 911, 1261
FriOI GRGCYC 3 cut(s) 81, 410, 975
Fsp4HI GCNGC 4 cut(s) 53, 56, 1263, 1347
FspBI CTAG 1 cut(s) 29
GlaI GCGC 2 cut(s) 228, 1130
GluI GCNGC 4 cut(s) 53, 56, 1263, 1347
GsaI CCCAGC 2 cut(s) 612, 1608
GsuI CTGGAG 1 cut(s) 489
HaeIII GGCC 2 cut(s) 206, 737
HapII CCGG 2 cut(s) 521, 662
HhaI GCGC 2 cut(s) 229, 1131
Hin1II CATG 6 cut(s) 358, 756, 1008, 1034, 1058, 1291
Hin6I GCGC 2 cut(s) 227, 1129
HinP1I GCGC 2 cut(s) 227, 1129
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HindIII AAGCTT 1 cut(s) 866
HpaII CCGG 2 cut(s) 521, 662
HphI GGTGA 4 cut(s) 505, 794, 1091, 1315
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 7 cut(s) 62, 89, 242, 374, 487, 838, 1360
Hpy188III TCNNGA 7 cut(s) 234, 304, 521, 668, 747, 1062, 1598
Hpy8I GTNNAC 1 cut(s) 363
Hpy99I CGWCG 1 cut(s) 595
HpyAV CCTTC 4 cut(s) 1205, 1277, 1294, 1300
HpyCH4III ACNGT 1 cut(s) 953
HpyF10VI GCNNNNNNNGC 1 cut(s) 805
Hsp92II CATG 6 cut(s) 358, 756, 1008, 1034, 1058, 1291
HspAI GCGC 2 cut(s) 227, 1129
Kpn2I TCCGGA 1 cut(s) 520
Ksp22I TGATCA 1 cut(s) 495
Kzo9I GATC 5 cut(s) 62, 230, 388, 495, 1389
LmnI GCTCC 6 cut(s) 99, 189, 405, 470, 838, 1084
Lsp1109I GCAGC 4 cut(s) 64, 67, 1249, 1333
LweI GCATC 1 cut(s) 862
MaeI CTAG 1 cut(s) 29
MalI GATC 5 cut(s) 64, 232, 390, 497, 1391
MbiI CCGCTC 1 cut(s) 780
MboI GATC 5 cut(s) 62, 230, 388, 495, 1389
MflI RGATCY 2 cut(s) 62, 1389
MhlI GDGCHC 5 cut(s) 81, 296, 410, 843, 975
MlsI TGGCCA 1 cut(s) 737
MluCI AATT 4 cut(s) 285, 337, 689, 904
MluNI TGGCCA 1 cut(s) 737
MlyI GAGTC 6 cut(s) 231, 301, 533, 827, 1412, 1585
Mox20I TGGCCA 1 cut(s) 737
MroI TCCGGA 1 cut(s) 520
MscI TGGCCA 1 cut(s) 737
MseI TTAA 5 cut(s) 420, 627, 816, 825, 887
MslI CAYNNNNRTG 1 cut(s) 153
Msp20I TGGCCA 1 cut(s) 737
MspI CCGG 2 cut(s) 521, 662
MspR9I CCNGG 2 cut(s) 203, 663
Mva1269I GAATGC 2 cut(s) 688, 1593
MvaI CCWGG 1 cut(s) 203
MvnI CGCG 1 cut(s) 229
MwoI GCNNNNNNNGC 1 cut(s) 805
NciI CCSGG 1 cut(s) 663
NcoI CCATGG 1 cut(s) 354
NdeI CATATG 1 cut(s) 1351
NdeII GATC 5 cut(s) 62, 230, 388, 495, 1389
NlaIII CATG 6 cut(s) 358, 756, 1008, 1034, 1058, 1291
NlaIV GGNNCC 2 cut(s) 807, 1391
NmeAIII GCCGAG 1 cut(s) 1569
NspI RCATGY 2 cut(s) 756, 1034
NspV TTCGAA 1 cut(s) 1239
PaeR7I CTCGAG 1 cut(s) 1277
PciI ACATGT 1 cut(s) 752
PctI GAATGC 2 cut(s) 688, 1593
PfeI GAWTC 5 cut(s) 104, 728, 920, 1114, 1253
PkrI GCNGC 4 cut(s) 54, 57, 1264, 1348
PleI GAGTC 6 cut(s) 231, 301, 532, 827, 1411, 1584
PpsI GAGTC 6 cut(s) 231, 301, 532, 827, 1411, 1584
PscI ACATGT 1 cut(s) 752
PshBI ATTAAT 2 cut(s) 627, 816
Psp124BI GAGCTC 2 cut(s) 81, 410
Psp6I CCWGG 1 cut(s) 201
PspFI CCCAGC 2 cut(s) 608, 1604
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 2 cut(s) 807, 1391
PspPI GGNCC 1 cut(s) 205
PspXI VCTCGAGB 1 cut(s) 1277
PsrI GAACNNNNNNTAC 2 cut(s) 941, 973
PstI CTGCAG 1 cut(s) 1172
PsuI RGATCY 2 cut(s) 62, 1389
RsaI GTAC 8 cut(s) 350, 428, 536, 769, 851, 880, 981, 1325
RsaNI GTAC 8 cut(s) 349, 427, 535, 768, 850, 879, 980, 1324
RseI CAYNNNNRTG 1 cut(s) 153
SacI GAGCTC 2 cut(s) 81, 410
SaqAI TTAA 5 cut(s) 420, 627, 816, 825, 887
SatI GCNGC 4 cut(s) 53, 56, 1263, 1347
Sau3AI GATC 5 cut(s) 62, 230, 388, 495, 1389
Sau96I GGNCC 1 cut(s) 205
ScaI AGTACT 1 cut(s) 769
SchI GAGTC 6 cut(s) 231, 301, 533, 827, 1412, 1585
ScrFI CCNGG 2 cut(s) 203, 663
SduI GDGCHC 5 cut(s) 81, 296, 410, 843, 975
SfaNI GCATC 1 cut(s) 862
SfcI CTRYAG 2 cut(s) 1168, 1270
Sfr274I CTCGAG 1 cut(s) 1277
SfuI TTCGAA 1 cut(s) 1239
SlaI CTCGAG 1 cut(s) 1277
SmiMI CAYNNNNRTG 1 cut(s) 153
SmlI CTYRAG 3 cut(s) 800, 1277, 1327
SmoI CTYRAG 3 cut(s) 800, 1277, 1327
Sse9I AATT 4 cut(s) 285, 337, 689, 904
SsiI CCGC 3 cut(s) 545, 780, 1265
SspMI CTAG 1 cut(s) 29
SstI GAGCTC 2 cut(s) 81, 410
StyD4I CCNGG 2 cut(s) 201, 661
StyI CCWWGG 1 cut(s) 354
TaaI ACNGT 1 cut(s) 953
TasI AATT 4 cut(s) 285, 337, 689, 904
TatI WGTACW 2 cut(s) 534, 767
TfiI GAWTC 5 cut(s) 104, 728, 920, 1114, 1253
Tru1I TTAA 5 cut(s) 420, 627, 816, 825, 887
Tru9I TTAA 5 cut(s) 420, 627, 816, 825, 887
TscAI CASTG 3 cut(s) 285, 958, 1506
TseI GCWGC 4 cut(s) 52, 55, 1262, 1346
TspDTI ATGAA 8 cut(s) 118, 171, 978, 993, 1043, 1326, 1571, 1586
TspGWI ACGGA 5 cut(s) 278, 659, 721, 1396, 1402
TspRI CASTG 3 cut(s) 285, 958, 1506
VspI ATTAAT 2 cut(s) 627, 816
XapI RAATTY 1 cut(s) 337
XceI RCATGY 2 cut(s) 756, 1034
XhoI CTCGAG 1 cut(s) 1277
XspI CTAG 1 cut(s) 29
ZrmI AGTACT 1 cut(s) 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.