Rw4G031490

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0015044
Physical Location & Seq
Forward (+)
58642098 .. 58643916
1819 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G031490.1

Sequence Viewer

Length: 1620 bp
ATGAGAGAAACCCAACAACAACAACAGCAACAGCTAGAAATGGCAGAAGAGCTAATGCAGCAGCTCAGATCCAAAGCCACAGAGCTCTTACTCAGAGAAGAATGGAGCGAATCCATACAAGTCTATTCTCAGTTCATCAATCTCTGCCAACACCACATCAATGAAACCACCCCAGACAACCTCCCAAAGCTCCACAAGTCCCTCTGCCTGGCCCTCTCGAACCGAGCCGAAGGGCGATCCAGACTCCGAGACTATGCACAAGCCTTGAAGGATTGTGATGAGGCACTGAAAATTGAGAGCACCCATTTCAAGACTCTCATCTGCAAAGGTAAGATTTTGCTGAATTTGAACAGGTACTCCATGGCATTGACTTGCTTCAGAACTGCTCAGCTTGATCCTCAGGCAAATGGGAGCTCGGTTGGGCTTAATGGGTACTTGCAGAAATGCAAGAAGCTCGAACTGATGTCGAAAACTGGAGCTTTCGATATGTCTGAGTGGGTGATCAATGGGTTTCGGGCTAAGCCTCCGGAGCCGGCTGAGTACATTGGGGCGGTGGAGATGAGGAAGTCGGGGATTAGAGGGCGTGGTTTGTTTGCGACGAAGAATATGGAAGCTGGGAGTTTGGTGCTGATTAATAAAGCTGTTGCAACGGAGAGAGGTATTTTGCCGGGTCAAGATTTGGATGAGAATGCCCAATTAGTTATGTGGAAGACTTTTACTGAAACAGTGATGGATTCCGTGGCCAAATGTTCGAGAACATGTGGTTTGATTAGTACTTTGTCGAGTGGTGAAGATGAGGATGGGCTTGAGGTGCCTGAGATTAATCTGTTTAAGCCTGACTCGGAGCACTTTGGGTACTCAAATGAGAAGAAGCTTGATGCGAGTAGGATTTTAAGTATTTTGGATGTCAATTCGATTGTTGAGGATTCGATTTCGTCAAAGGTTTTGGGGAAGAACAGTGATTACTATGGTGTTGGGCTTTGGGTACTTGCTTCATTTATCAACCATTCATGTATTCCCAATGCAAGGCGTTTGCATGTTGGGGACTATGTGATTGTTCATGCTTCAAGAGATGTCAAGGCTGGTGAGGAGCTAACATTTGCATATTTTGATGTGCTGAATCCGTTGGAAAAGCGCAACGAAATGTCAAAGACTTGGGGGTTTAGGTGCAACTGCAGGAGGTGTAAGTTTGAGGCTGAACTATGTTCGAGGCAAGAAGGCATTGGCGAGATTGAGATGGGTTTCGAAAGAGGGATGGATTCTGGTGCTGCGGTCTATAGGCTCGAGGAAGGCATGAGAAAATGGAAGGTGAAGGAAAAGGAAAAAGGGTACTTGAGAGCTTCATTTTGGGCTGCATATGGCTCAGAGAAGTTGATGAGAAGTTGGGGAAGACGGATCCCAATGATGGAGTCCGTGGTTGATAGCATTGTGGAAGCTGTGGGAAGTGATGAGAGGGTGTTGAAGATGGTGGTGGAGAAGATAAAGAAAGGTAATGGTGGCAGTTCAGTGGTGGAAATAGAAAGAGCTTTGAAGTTGGGAAGAGGAGTTTATGGAAAAGTAATGAAGAAGCAAGCAATGAAGAGTCTTCTTGGCCTTGGCATTCTTGAACCCAGCTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

539

Amino Acids

60.67

Weight (kDa)

8.27

Isoelectric Point (pI)

37.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SET PF00856 194 - 369 3.5e-14 SET domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26760
fragaria_vesca FvH4_4g31050
malus_domestica MD13G1069000.v1.1
prunus_persica Prupe.1G278000_v2.0.a1
pyrus_communis pycom13g06180 pycom16g06040
rosa_chinensis RchiOBHm_Chr4g0439431
rosa_laevigata RLG00000006273
rosa_multiflora Rmu_sc0007276.1_g000002
rosa_roxburghii Rroxscaffold_5G00380340
rosa_rugosa Rorug04G0318100
rosa_samantha Rh4AG369400 Rh4BG381200 Rh4CG395800 Rh4DG375900
rosa_wichuraiana Rw4G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 811
AccIII TCCGGA 1 cut(s) 526
AciI CCGC 2 cut(s) 551, 1271
AclWI GGATC 5 cut(s) 63, 231, 389, 1390, 1403
AcoI YGGCCR 1 cut(s) 741
AcsI RAATTY 1 cut(s) 343
AcuI CTGAAG 1 cut(s) 361
AfaI GTAC 7 cut(s) 356, 434, 542, 775, 857, 987, 1331
AfiI CCNNNNNNNGG 3 cut(s) 208, 1026, 1405
AflIII ACRYGT 1 cut(s) 758
AgsI TTSAA 7 cut(s) 268, 310, 349, 1068, 1462, 1531, 1607
AjnI CCWGG 1 cut(s) 207
AloI GAACNNNNNNTCC 2 cut(s) 341, 373
Alw21I GWGCWC 4 cut(s) 87, 302, 416, 849
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 5 cut(s) 63, 231, 389, 1390, 1403
Ama87I CYCGRG 1 cut(s) 1283
Aor13HI TCCGGA 1 cut(s) 526
AoxI GGCC 3 cut(s) 210, 741, 1591
ApeKI GCWGC 4 cut(s) 58, 61, 1268, 1352
ApoI RAATTY 1 cut(s) 343
AseI ATTAAT 2 cut(s) 633, 822
AspLEI GCGC 1 cut(s) 1137
AspS9I GGNCC 1 cut(s) 211
AsuC2I CCSGG 1 cut(s) 669
AsuHPI GGTGA 4 cut(s) 511, 800, 1097, 1321
AsuII TTCGAA 1 cut(s) 1245
AvaI CYCGRG 1 cut(s) 1283
AxyI CCTNAGG 1 cut(s) 399
BalI TGGCCA 1 cut(s) 743
BamHI GGATCC 1 cut(s) 1395
BanI GGYRCC 1 cut(s) 811
BanII GRGCYC 2 cut(s) 87, 416
BbsI GAAGAC 3 cut(s) 716, 1396, 1577
Bbv12I GWGCWC 4 cut(s) 87, 302, 416, 849
BbvI GCAGC 4 cut(s) 70, 73, 1255, 1339
BccI CCATC 6 cut(s) 724, 794, 1231, 1249, 1399, 1459
BcgI CGANNNNNNTGC 2 cut(s) 436, 470
BciT130I CCWGG 1 cut(s) 209
BclI TGATCA 1 cut(s) 501
BcnI CCSGG 1 cut(s) 669
BcoDI GTCTC 1 cut(s) 243
BfaI CTAG 1 cut(s) 35
BfmI CTRYAG 2 cut(s) 1174, 1276
BisI GCNGC 4 cut(s) 59, 62, 1269, 1353
BlpI GCTNAGC 2 cut(s) 387, 519
BlsI GCNGC 4 cut(s) 60, 63, 1270, 1354
BmcAI AGTACT 1 cut(s) 775
Bme1390I CCNGG 2 cut(s) 209, 669
BmeT110I CYCGRG 1 cut(s) 1283
BmgT120I GGNCC 1 cut(s) 211
BmiI GGNNCC 3 cut(s) 531, 813, 1397
BmrFI CCNGG 2 cut(s) 209, 669
BmsI GCATC 1 cut(s) 868
BpiI GAAGAC 3 cut(s) 716, 1396, 1577
BpmI CTGGAG 1 cut(s) 495
Bpu1102I GCTNAGC 2 cut(s) 387, 519
Bpu14I TTCGAA 1 cut(s) 1245
BpuEI CTTGAG 2 cut(s) 827, 1354
BpuMI CCSGG 1 cut(s) 669
BsaJI CCNNGG 4 cut(s) 360, 738, 1413, 1594
BsaWI WCCGGW 1 cut(s) 526
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 3 cut(s) 208, 1026, 1405
Bse118I RCCGGY 1 cut(s) 532
Bse1I ACTGG 1 cut(s) 478
Bse21I CCTNAGG 1 cut(s) 399
Bse3DI GCAATG 1 cut(s) 1581
BseAI TCCGGA 1 cut(s) 526
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 4 cut(s) 360, 738, 1413, 1594
BseGI GGATG 4 cut(s) 688, 805, 910, 1260
BseLI CCNNNNNNNGG 3 cut(s) 208, 1026, 1405
BseMI GCAATG 1 cut(s) 1581
BseMII CTCAG 9 cut(s) 79, 106, 143, 401, 413, 483, 528, 807, 1377
BseNI ACTGG 1 cut(s) 478
BseRI GAGGAG 2 cut(s) 1103, 1557
BseXI GCAGC 4 cut(s) 70, 73, 1255, 1339
BseYI CCCAGC 2 cut(s) 614, 1610
BshFI GGCC 3 cut(s) 212, 743, 1593
BshNI GGYRCC 1 cut(s) 811
BsiHKAI GWGCWC 4 cut(s) 87, 302, 416, 849
BsiHKCI CYCGRG 1 cut(s) 1283
BsiSI CCGG 3 cut(s) 527, 533, 668
BslFI GGGAC 2 cut(s) 184, 1058
BslI CCNNNNNNNGG 3 cut(s) 208, 1026, 1405
BsmAI GTCTC 1 cut(s) 243
BsmFI GGGAC 2 cut(s) 184, 1058
BsmI GAATGC 2 cut(s) 694, 1599
BsnI GGCC 3 cut(s) 212, 743, 1593
BsoBI CYCGRG 1 cut(s) 1283
Bsp119I TTCGAA 1 cut(s) 1245
Bsp1286I GDGCHC 4 cut(s) 87, 302, 416, 849
Bsp13I TCCGGA 1 cut(s) 526
Bsp143I GATC 5 cut(s) 68, 236, 394, 501, 1395
Bsp1720I GCTNAGC 2 cut(s) 387, 519
Bsp19I CCATGG 1 cut(s) 360
BspACI CCGC 2 cut(s) 551, 1271
BspANI GGCC 3 cut(s) 212, 743, 1593
BspCNI CTCAG 9 cut(s) 78, 105, 142, 400, 412, 484, 529, 808, 1376
BspEI TCCGGA 1 cut(s) 526
BspLI GGNNCC 3 cut(s) 531, 813, 1397
BspMAI CTGCAG 1 cut(s) 1178
BspPI GGATC 5 cut(s) 63, 231, 389, 1390, 1403
BspQI GCTCTTC 1 cut(s) 42
BspT104I TTCGAA 1 cut(s) 1245
BspT107I GGYRCC 1 cut(s) 811
BsrDI GCAATG 1 cut(s) 1581
BsrFI RCCGGY 1 cut(s) 532
BsrI ACTGG 1 cut(s) 478
BssAI RCCGGY 1 cut(s) 532
BssECI CCNNGG 4 cut(s) 360, 738, 1413, 1594
BssMI GATC 5 cut(s) 68, 236, 394, 501, 1395
BssT1I CCWWGG 2 cut(s) 360, 1594
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 2 cut(s) 727, 959
Bst6I CTCTTC 3 cut(s) 42, 1534, 1574
BstBI TTCGAA 1 cut(s) 1245
BstC8I GCNNGC 2 cut(s) 534, 1572
BstDSI CCRYGG 3 cut(s) 360, 738, 1413
BstF5I GGATG 4 cut(s) 688, 805, 910, 1260
BstHHI GCGC 1 cut(s) 1137
BstKTI GATC 5 cut(s) 71, 239, 397, 504, 1398
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 5 cut(s) 68, 236, 394, 501, 1395
BstMWI GCNNNNNNNGC 3 cut(s) 58, 529, 811
BstNI CCWGG 1 cut(s) 209
BstNSI RCATGY 2 cut(s) 762, 1040
BstSCI CCNGG 2 cut(s) 207, 667
BstSFI CTRYAG 2 cut(s) 1174, 1276
BstV1I GCAGC 4 cut(s) 70, 73, 1255, 1339
BstV2I GAAGAC 3 cut(s) 716, 1396, 1577
BstX2I RGATCY 2 cut(s) 68, 1395
BstYI RGATCY 2 cut(s) 68, 1395
Bsu36I CCTNAGG 1 cut(s) 399
BsuRI GGCC 3 cut(s) 212, 743, 1593
BtgI CCRYGG 3 cut(s) 360, 738, 1413
BtsCI GGATG 4 cut(s) 688, 805, 910, 1260
BtsIMutI CAGTG 4 cut(s) 284, 732, 964, 1512
Cac8I GCNNGC 2 cut(s) 534, 1572
CfoI GCGC 1 cut(s) 1137
Cfr10I RCCGGY 1 cut(s) 532
Cfr13I GGNCC 1 cut(s) 211
Csp6I GTAC 7 cut(s) 355, 433, 541, 774, 856, 986, 1330
CviAII CATG 6 cut(s) 361, 759, 1011, 1037, 1061, 1294
CviQI GTAC 7 cut(s) 355, 433, 541, 774, 856, 986, 1330
DpnI GATC 5 cut(s) 70, 238, 396, 503, 1397
DpnII GATC 5 cut(s) 68, 236, 394, 501, 1395
EaeI YGGCCR 1 cut(s) 741
Eam1104I CTCTTC 3 cut(s) 42, 1534, 1574
EarI CTCTTC 3 cut(s) 42, 1534, 1574
Ecl136II GAGCTC 2 cut(s) 85, 414
Eco130I CCWWGG 2 cut(s) 360, 1594
Eco24I GRGCYC 2 cut(s) 87, 416
Eco53kI GAGCTC 2 cut(s) 85, 414
Eco57I CTGAAG 1 cut(s) 361
Eco81I CCTNAGG 1 cut(s) 399
Eco88I CYCGRG 1 cut(s) 1283
EcoICRI GAGCTC 2 cut(s) 85, 414
EcoRII CCWGG 1 cut(s) 207
EcoT14I CCWWGG 2 cut(s) 360, 1594
EcoT38I GRGCYC 2 cut(s) 87, 416
ErhI CCWWGG 2 cut(s) 360, 1594
FaeI CATG 6 cut(s) 364, 762, 1014, 1040, 1064, 1297
FaqI GGGAC 2 cut(s) 184, 1058
FatI CATG 6 cut(s) 360, 758, 1010, 1036, 1060, 1293
FauNDI CATATG 1 cut(s) 1357
FbaI TGATCA 1 cut(s) 501
Fnu4HI GCNGC 4 cut(s) 59, 62, 1269, 1353
FokI GGATG 4 cut(s) 695, 812, 917, 1267
FriOI GRGCYC 2 cut(s) 87, 416
Fsp4HI GCNGC 4 cut(s) 59, 62, 1269, 1353
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 1136
GluI GCNGC 4 cut(s) 59, 62, 1269, 1353
GsaI CCCAGC 2 cut(s) 618, 1614
GsuI CTGGAG 1 cut(s) 495
HaeIII GGCC 3 cut(s) 212, 743, 1593
HapII CCGG 3 cut(s) 527, 533, 668
HhaI GCGC 1 cut(s) 1137
Hin1II CATG 6 cut(s) 364, 762, 1014, 1040, 1064, 1297
Hin6I GCGC 1 cut(s) 1135
HinP1I GCGC 1 cut(s) 1135
HindIII AAGCTT 1 cut(s) 872
HpaII CCGG 3 cut(s) 527, 533, 668
HphI GGTGA 4 cut(s) 511, 800, 1097, 1321
Hpy188I TCNGA 7 cut(s) 68, 95, 248, 380, 493, 844, 1366
Hpy188III TCNNGA 8 cut(s) 217, 240, 310, 527, 674, 753, 1068, 1604
Hpy99I CGWCG 1 cut(s) 601
HpyAV CCTTC 6 cut(s) 224, 262, 1211, 1283, 1300, 1306
HpyCH4III ACNGT 2 cut(s) 727, 959
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 529, 811
Hsp92II CATG 6 cut(s) 364, 762, 1014, 1040, 1064, 1297
HspAI GCGC 1 cut(s) 1135
Kpn2I TCCGGA 1 cut(s) 526
KroI GCCGGC 1 cut(s) 532
KroNI GCCGGC 1 cut(s) 534
Ksp22I TGATCA 1 cut(s) 501
Kzo9I GATC 5 cut(s) 68, 236, 394, 501, 1395
LguI GCTCTTC 1 cut(s) 42
LmnI GCTCC 7 cut(s) 105, 195, 411, 476, 529, 844, 1090
Lsp1109I GCAGC 4 cut(s) 70, 73, 1255, 1339
LweI GCATC 1 cut(s) 868
MaeI CTAG 1 cut(s) 35
MalI GATC 5 cut(s) 70, 238, 396, 503, 1397
MboI GATC 5 cut(s) 68, 236, 394, 501, 1395
MflI RGATCY 2 cut(s) 68, 1395
MhlI GDGCHC 4 cut(s) 87, 302, 416, 849
MlsI TGGCCA 1 cut(s) 743
MluCI AATT 4 cut(s) 291, 343, 695, 910
MluNI TGGCCA 1 cut(s) 743
MlyI GAGTC 5 cut(s) 237, 307, 833, 1418, 1591
MmeI TCCRAC 1 cut(s) 1107
Mox20I TGGCCA 1 cut(s) 743
MroI TCCGGA 1 cut(s) 526
MroNI GCCGGC 1 cut(s) 532
MscI TGGCCA 1 cut(s) 743
MseI TTAA 5 cut(s) 426, 633, 822, 831, 893
MslI CAYNNNNRTG 1 cut(s) 159
Msp20I TGGCCA 1 cut(s) 743
MspI CCGG 3 cut(s) 527, 533, 668
MspR9I CCNGG 2 cut(s) 209, 669
Mva1269I GAATGC 2 cut(s) 694, 1599
MvaI CCWGG 1 cut(s) 209
MwoI GCNNNNNNNGC 3 cut(s) 58, 529, 811
NaeI GCCGGC 1 cut(s) 534
NciI CCSGG 1 cut(s) 669
NcoI CCATGG 1 cut(s) 360
NdeI CATATG 1 cut(s) 1357
NdeII GATC 5 cut(s) 68, 236, 394, 501, 1395
NgoMIV GCCGGC 1 cut(s) 532
NlaIII CATG 6 cut(s) 364, 762, 1014, 1040, 1064, 1297
NlaIV GGNNCC 3 cut(s) 531, 813, 1397
NspI RCATGY 2 cut(s) 762, 1040
NspV TTCGAA 1 cut(s) 1245
PaeR7I CTCGAG 1 cut(s) 1283
PciI ACATGT 1 cut(s) 758
PciSI GCTCTTC 1 cut(s) 42
PctI GAATGC 2 cut(s) 694, 1599
PdiI GCCGGC 1 cut(s) 534
PfeI GAWTC 5 cut(s) 110, 734, 926, 1120, 1259
PkrI GCNGC 4 cut(s) 60, 63, 1270, 1354
PleI GAGTC 5 cut(s) 237, 307, 833, 1417, 1590
PpsI GAGTC 5 cut(s) 237, 307, 833, 1417, 1590
PscI ACATGT 1 cut(s) 758
PshBI ATTAAT 2 cut(s) 633, 822
Psp124BI GAGCTC 2 cut(s) 87, 416
Psp6I CCWGG 1 cut(s) 207
PspFI CCCAGC 2 cut(s) 614, 1610
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 3 cut(s) 531, 813, 1397
PspPI GGNCC 1 cut(s) 211
PspXI VCTCGAGB 1 cut(s) 1283
PsrI GAACNNNNNNTAC 2 cut(s) 947, 979
PstI CTGCAG 1 cut(s) 1178
PsuI RGATCY 2 cut(s) 68, 1395
RsaI GTAC 7 cut(s) 356, 434, 542, 775, 857, 987, 1331
RsaNI GTAC 7 cut(s) 355, 433, 541, 774, 856, 986, 1330
RseI CAYNNNNRTG 1 cut(s) 159
SacI GAGCTC 2 cut(s) 87, 416
SapI GCTCTTC 1 cut(s) 42
SaqAI TTAA 5 cut(s) 426, 633, 822, 831, 893
SatI GCNGC 4 cut(s) 59, 62, 1269, 1353
Sau3AI GATC 5 cut(s) 68, 236, 394, 501, 1395
Sau96I GGNCC 1 cut(s) 211
ScaI AGTACT 1 cut(s) 775
SchI GAGTC 5 cut(s) 237, 307, 833, 1418, 1591
ScrFI CCNGG 2 cut(s) 209, 669
SduI GDGCHC 4 cut(s) 87, 302, 416, 849
SfaNI GCATC 1 cut(s) 868
SfcI CTRYAG 2 cut(s) 1174, 1276
Sfr274I CTCGAG 1 cut(s) 1283
SfuI TTCGAA 1 cut(s) 1245
SlaI CTCGAG 1 cut(s) 1283
SmiMI CAYNNNNRTG 1 cut(s) 159
SmlI CTYRAG 3 cut(s) 806, 1283, 1333
SmoI CTYRAG 3 cut(s) 806, 1283, 1333
Sse9I AATT 4 cut(s) 291, 343, 695, 910
SsiI CCGC 2 cut(s) 551, 1271
SspMI CTAG 1 cut(s) 35
SstI GAGCTC 2 cut(s) 87, 416
StyD4I CCNGG 2 cut(s) 207, 667
StyI CCWWGG 2 cut(s) 360, 1594
TaaI ACNGT 2 cut(s) 727, 959
TasI AATT 4 cut(s) 291, 343, 695, 910
TatI WGTACW 2 cut(s) 540, 773
TfiI GAWTC 5 cut(s) 110, 734, 926, 1120, 1259
Tru1I TTAA 5 cut(s) 426, 633, 822, 831, 893
Tru9I TTAA 5 cut(s) 426, 633, 822, 831, 893
TscAI CASTG 4 cut(s) 291, 732, 964, 1512
TseI GCWGC 4 cut(s) 58, 61, 1268, 1352
TspDTI ATGAA 8 cut(s) 124, 177, 984, 999, 1049, 1332, 1577, 1592
TspGWI ACGGA 5 cut(s) 665, 727, 1113, 1402, 1408
TspRI CASTG 4 cut(s) 291, 732, 964, 1512
VspI ATTAAT 2 cut(s) 633, 822
XapI RAATTY 1 cut(s) 343
XceI RCATGY 2 cut(s) 762, 1040
XhoI CTCGAG 1 cut(s) 1283
XspI CTAG 1 cut(s) 35
ZrmI AGTACT 1 cut(s) 775
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.