pycom16g06040

SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0015044
Physical Location & Seq
Forward (+)
3863855 .. 3864570
716 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g06040.2

Sequence Viewer

Length: 651 bp
ATGCATATAGGAGATTATGTAATGGTCCATGCTTCTAGAGATGTCAAGGCCGGAGAGGAGATAACATTCACATATTTTGATGTGCTTTCGCCGTTGGAAAAGCGCAACGAAAGTTGCAAGACATGGGGTTTCAGATGTAACTGCAACAGGTGCAAGTTCGAGGAGAAACTGTATTCTAGAGAAGACGTGAGAGAGATTGAGATGGGTCTCGAAAGAAGAATGGAGGCCGGCGCTGCGGTTTATAAGCTGGAGGAAGGCATGAGGAGGTGGATGGTGAAGGAAAGGGAGAAGGGGTACTTGAGAGCATCGTTTTGGGATGCATGCTCTCAGGTTTATGGCACAGAGAAATCGGCAAAAGGGTGGGGAAGACGCATACCACCGCTAGAGACAGTGGTTGATAGCGTCGTGGAAGCGGTGGGAAGCGACGAGAGCGCGTTGAAGATGGTGGCGGAGAAGTTGAAGAGAGGTGGTGGAGGAATGTTGGAAATGGAGAGAGCTTTGAAGTTGGGAAGAGGGGTGTACGGGAAAGTAGTGAAAAAGCAAGCAATGAAGAGCCTTGTTGGTTTAGCCACTGATGAGCTGATTTTTTGTTCAACCAACGGAATATATTACGCAGTTTTTTTTTCTTTTCTCAACACATCGATACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SET

Protein Analysis

217

Amino Acids

24.57

Weight (kDa)

8.65

Isoelectric Point (pI)

46.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015044)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G26760
fragaria_vesca FvH4_4g31050
malus_domestica MD13G1069000.v1.1
prunus_persica Prupe.1G278000_v2.0.a1
pyrus_communis pycom13g06180 pycom16g06040
rosa_chinensis RchiOBHm_Chr4g0439431
rosa_laevigata RLG00000006273
rosa_multiflora Rmu_sc0007276.1_g000002
rosa_roxburghii Rroxscaffold_5G00380340
rosa_rugosa Rorug04G0318100
rosa_samantha Rh4AG369400 Rh4BG381200 Rh4CG395800 Rh4DG375900
rosa_wichuraiana Rw4G031490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 243
AccII CGCG 1 cut(s) 434
AciI CCGC 4 cut(s) 236, 380, 413, 449
AfaI GTAC 2 cut(s) 296, 521
AgsI TTSAA 4 cut(s) 439, 460, 502, 594
AjiI CACGTC 1 cut(s) 187
AluBI AGCT 3 cut(s) 247, 497, 580
AluI AGCT 3 cut(s) 247, 497, 580
Alw26I GTCTC 2 cut(s) 212, 380
AoxI GGCC 2 cut(s) 48, 225
ApeKI GCWGC 1 cut(s) 233
AspLEI GCGC 3 cut(s) 105, 233, 434
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 286
AvaII GGWCC 1 cut(s) 25
BbsI GAAGAC 2 cut(s) 189, 373
BbvI GCAGC 1 cut(s) 220
BccI CCATC 3 cut(s) 196, 265, 436
BceAI ACGGC 1 cut(s) 76
BcoDI GTCTC 2 cut(s) 212, 380
BfaI CTAG 3 cut(s) 36, 177, 383
BfoI RGCGCY 1 cut(s) 234
BisI GCNGC 1 cut(s) 234
BlsI GCNGC 1 cut(s) 235
Bme18I GGWCC 1 cut(s) 25
BmgBI CACGTC 1 cut(s) 187
BmgT120I GGNCC 1 cut(s) 25
BmsI GCATC 2 cut(s) 307, 314
BpiI GAAGAC 2 cut(s) 189, 373
BpmI CTGGAG 1 cut(s) 269
BpuEI CTTGAG 1 cut(s) 319
Bsa29I ATCGAT 1 cut(s) 641
BsaI GGTCTC 1 cut(s) 212
BsaXI ACNNNNNCTCC 5 cut(s) 33, 155, 185, 278, 308
Bse118I RCCGGY 1 cut(s) 227
Bse3DI GCAATG 1 cut(s) 552
BseCI ATCGAT 1 cut(s) 641
BseGI GGATG 2 cut(s) 276, 322
BseMI GCAATG 1 cut(s) 552
BseMII CTCAG 1 cut(s) 341
BseRI GAGGAG 3 cut(s) 71, 176, 277
BseXI GCAGC 1 cut(s) 220
Bsh1236I CGCG 1 cut(s) 434
BshFI GGCC 2 cut(s) 50, 227
BshVI ATCGAT 1 cut(s) 641
BsiSI CCGG 2 cut(s) 51, 228
BsmAI GTCTC 2 cut(s) 212, 380
BsnI GGCC 2 cut(s) 50, 227
Bso31I GGTCTC 1 cut(s) 212
BspACI CCGC 4 cut(s) 236, 380, 413, 449
BspANI GGCC 2 cut(s) 50, 227
BspCNI CTCAG 1 cut(s) 340
BspDI ATCGAT 1 cut(s) 641
BspFNI CGCG 1 cut(s) 434
BspQI GCTCTTC 1 cut(s) 545
BspTNI GGTCTC 1 cut(s) 212
BsrDI GCAATG 1 cut(s) 552
BsrFI RCCGGY 1 cut(s) 227
BssAI RCCGGY 1 cut(s) 227
Bst4CI ACNGT 2 cut(s) 171, 391
Bst6I CTCTTC 3 cut(s) 455, 505, 545
BstAPI GCANNNNNTGC 1 cut(s) 150
BstC8I GCNNGC 3 cut(s) 229, 322, 543
BstDEI CTNAG 1 cut(s) 327
BstF5I GGATG 2 cut(s) 276, 322
BstFNI CGCG 1 cut(s) 434
BstH2I RGCGCY 1 cut(s) 234
BstHHI GCGC 3 cut(s) 105, 233, 434
BstMAI GTCTC 2 cut(s) 212, 380
BstMWI GCNNNNNNNGC 3 cut(s) 150, 233, 429
BstNSI RCATGY 1 cut(s) 324
BstUI CGCG 1 cut(s) 434
BstV1I GCAGC 1 cut(s) 220
BstV2I GAAGAC 2 cut(s) 189, 373
Bsu15I ATCGAT 1 cut(s) 641
BsuRI GGCC 2 cut(s) 50, 227
BsuTUI ATCGAT 1 cut(s) 641
BtrI CACGTC 1 cut(s) 187
BtsCI GGATG 2 cut(s) 276, 322
BtsIMutI CAGTG 2 cut(s) 396, 570
Cac8I GCNNGC 3 cut(s) 229, 322, 543
CfoI GCGC 3 cut(s) 105, 233, 434
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 1 cut(s) 25
ClaI ATCGAT 1 cut(s) 641
CseI GACGC 2 cut(s) 378, 391
Csp6I GTAC 2 cut(s) 295, 520
CviAII CATG 4 cut(s) 29, 123, 259, 321
CviJI RGCY 7 cut(s) 50, 227, 247, 497, 555, 569, 580
CviKI_1 RGCY 7 cut(s) 50, 227, 247, 497, 555, 569, 580
CviQI GTAC 2 cut(s) 295, 520
DdeI CTNAG 1 cut(s) 327
Eam1104I CTCTTC 3 cut(s) 455, 505, 545
EarI CTCTTC 3 cut(s) 455, 505, 545
EciI GGCGGA 1 cut(s) 464
Eco31I GGTCTC 1 cut(s) 212
Eco47I GGWCC 1 cut(s) 25
EcoT22I ATGCAT 2 cut(s) 6, 322
FaeI CATG 4 cut(s) 32, 126, 262, 324
FalI AAGNNNNNCTT 2 cut(s) 281, 313
FatI CATG 4 cut(s) 28, 122, 258, 320
Fnu4HI GCNGC 1 cut(s) 234
FokI GGATG 2 cut(s) 283, 329
Fsp4HI GCNGC 1 cut(s) 234
FspBI CTAG 3 cut(s) 36, 177, 383
GlaI GCGC 3 cut(s) 104, 232, 433
GluI GCNGC 1 cut(s) 234
GsuI CTGGAG 1 cut(s) 269
HaeII RGCGCY 1 cut(s) 234
HaeIII GGCC 2 cut(s) 50, 227
HapII CCGG 2 cut(s) 51, 228
HgaI GACGC 2 cut(s) 378, 391
HhaI GCGC 3 cut(s) 105, 233, 434
Hin1II CATG 4 cut(s) 32, 126, 262, 324
Hin6I GCGC 3 cut(s) 103, 231, 432
HinP1I GCGC 3 cut(s) 103, 231, 432
HpaII CCGG 2 cut(s) 51, 228
HphI GGTGA 1 cut(s) 286
Hpy166II GTNNAC 1 cut(s) 520
Hpy188I TCNGA 1 cut(s) 134
Hpy188III TCNNGA 3 cut(s) 36, 177, 209
Hpy8I GTNNAC 1 cut(s) 520
Hpy99I CGWCG 2 cut(s) 407, 428
HpyAV CCTTC 3 cut(s) 248, 271, 283
HpyCH4III ACNGT 2 cut(s) 171, 391
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 5 cut(s) 4, 117, 144, 153, 320
HpyF10VI GCNNNNNNNGC 3 cut(s) 150, 233, 429
HpyF3I CTNAG 1 cut(s) 327
HpySE526I ACGT 1 cut(s) 186
Hsp92II CATG 4 cut(s) 32, 126, 262, 324
HspAI GCGC 3 cut(s) 103, 231, 432
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
LguI GCTCTTC 1 cut(s) 545
LpnPI CCDG 5 cut(s) 64, 133, 233, 241, 314
Lsp1109I GCAGC 1 cut(s) 220
LweI GCATC 2 cut(s) 307, 314
MaeI CTAG 3 cut(s) 36, 177, 383
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 137
MboII GAAGA 7 cut(s) 194, 228, 378, 451, 472, 522, 562
MmeI TCCRAC 2 cut(s) 75, 462
MnlI CCTC 9 cut(s) 49, 154, 217, 244, 255, 258, 458, 467, 506
Mph1103I ATGCAT 2 cut(s) 6, 322
MroNI GCCGGC 1 cut(s) 227
MspI CCGG 2 cut(s) 51, 228
MvnI CGCG 1 cut(s) 434
MwoI GCNNNNNNNGC 3 cut(s) 150, 233, 429
NaeI GCCGGC 1 cut(s) 229
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 4 cut(s) 32, 126, 262, 324
NsiI ATGCAT 2 cut(s) 6, 322
NspI RCATGY 1 cut(s) 324
PaeI GCATGC 1 cut(s) 324
PciSI GCTCTTC 1 cut(s) 545
PdiI GCCGGC 1 cut(s) 229
PkrI GCNGC 1 cut(s) 235
PsiI TTATAA 1 cut(s) 243
PspPI GGNCC 1 cut(s) 25
RsaI GTAC 2 cut(s) 296, 521
RsaNI GTAC 2 cut(s) 295, 520
SapI GCTCTTC 1 cut(s) 545
SatI GCNGC 1 cut(s) 234
Sau96I GGNCC 1 cut(s) 25
SetI ASST 8 cut(s) 152, 189, 249, 269, 333, 469, 499, 582
SfaNI GCATC 2 cut(s) 307, 314
SinI GGWCC 1 cut(s) 25
SmlI CTYRAG 1 cut(s) 298
SmoI CTYRAG 1 cut(s) 298
SphI GCATGC 1 cut(s) 324
SsiI CCGC 4 cut(s) 236, 380, 413, 449
SspMI CTAG 3 cut(s) 36, 177, 383
TaaI ACNGT 2 cut(s) 171, 391
TaiI ACGT 1 cut(s) 189
TaqI TCGA 3 cut(s) 159, 210, 641
TscAI CASTG 2 cut(s) 396, 577
TseI GCWGC 1 cut(s) 233
TspDTI ATGAA 1 cut(s) 563
TspGWI ACGGA 1 cut(s) 615
TspRI CASTG 2 cut(s) 396, 577
VpaK11BI GGWCC 1 cut(s) 25
XbaI TCTAGA 2 cut(s) 35, 176
XceI RCATGY 1 cut(s) 324
XspI CTAG 3 cut(s) 36, 177, 383
Zsp2I ATGCAT 2 cut(s) 6, 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.