AT1G27340

F-box only protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
9495344 .. 9498085
2742 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G27340.1

Sequence Viewer

Length: 1404 bp
ATGGAAGAAGAGCTTGCCATGCTTAGACAGCTCATCGGTCAGCTTCAAGAGCTCTTGCACAACGGCTCTCCTCCTCCTCCTTCTTCTTCTTCATCTCTGTCGTCTTCTTCTCCGTCATTTTTGGTTCTCCACCATCCTCAGTATCAGAACGGATGGTGTTTGCCCTGTATTGAGGATACTTCTGCTGATGATTGTTGTGATATTGTAATGGCTGGTGGAAAGAGGCCTGGGATCTTCAAGATGTTAGAAACTGTCAAGCCTCCCGTCAAACGAACTCGAAAAGAACGGACTCAAGGGAAATCATGTACGGAAGTAGATGAGATAAGTGGGAACATGGATCAAGAAATATGGCAGGAATTCCCTCAAGATCTCTTTGAAGACGTTGTTTCCAGACTACCAATGGCTACTTTTTTCCAGTTCCGTGCAGTTTGCCGTAAATGGAATGCTCTTATTGATTCAGATAGCTTCTCCAGATGCTTCACTGAGCTTCCTCAGACCATCCCATGGTTCTACACCATAACCCACGAGAATGTCAACTCAGGACAAGTGTACGACCCTTCTTTGAAGAAATGGCACCATCCGATTATCCCAGCACTACCCAAGAAGAGTATTGTTTTGCCAATGGCTTCTGCAGGAGGTCTAGTGTGCTTCCTCGACATTGGTCATAGGAACTTCTACGTGAGCAACCCGCTTACCAAGTCTTTCAGGGAGTTGCCTGCTAGGTCGTTCAAGGTCTGGTCTCGTGTTGCGGTAGGAATGACTCTGAATGGAAACTCCACCAGTCATGGGTATAAGGTCTTGTGGGTTGGATGTGAAGGAGAGTACGAAGTCTATGATTCCCTGAGTAATGTGTGGACCAAACGAGGGACCATCCCGTCCAACATAAAGCTCCCGGTGTTGCTCAACTTTAAGTCACAGCCAGTGGCTATCCACAGCACACTTTACTTCATGTTAACAGATCCCGAAGGGATATTGTCCTATGACATGGTCTCTGGGAAATGGAAACAGTTCATTATACCTGGCCCACCAGACCTGAGCGATCACACGCTGGCTGCGTGCGGAGAGCGGTTGATGCTGGTGGGTCTACTGACTAAAAACGCTGCCACTTGCGTTTGCATATGGGAGCTGCAGAAGATGACACTGTTGTGGAAGGAGGTTGACAGAATGCCAAACATATGGTGCTTGGAGTTTTACGGAAAGCACATTAGGATGAATTGTCTGGGCAACAAAGGTTGTCTGATATTATTGTCCTTGAGGTCCAGACAGATGAACCGTCTGATAACCTACAATGCTGTGACTAGGGAATGGACCAAGGTCCCTGGCTGCACCGTTCCTCGTGGGAGGAAAAGACTTTGGATCGCTTGCGGAACAGCGTTTCATCCCTCCCCTACAGCTAGGGCTTGA

Protein Analysis

467

Amino Acids

52.82

Weight (kDa)

8.75

Isoelectric Point (pI)

53.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 117 - 156 1.2e-07 F-box domain
FBA_1 PF07734 180 - 388 7.4e-10 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 201 - 384 9.3e-10 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 874
AccB1I GGYRCC 1 cut(s) 573
AccB7I CCANNNNNTGG 1 cut(s) 504
AccBSI CCGCTC 1 cut(s) 1066
AccI GTMKAC 1 cut(s) 1084
AciI CCGC 5 cut(s) 689, 749, 1059, 1066, 1365
AclWI GGATC 4 cut(s) 239, 345, 953, 1364
AcsI RAATTY 1 cut(s) 356
AfaI GTAC 3 cut(s) 307, 551, 824
AfiI CCNNNNNNNGG 3 cut(s) 504, 786, 864
AgsI TTSAA 5 cut(s) 47, 238, 377, 565, 730
AjnI CCWGG 3 cut(s) 226, 1018, 1318
AleI CACNNNNGTG 1 cut(s) 1144
AluBI AGCT 9 cut(s) 13, 31, 43, 52, 465, 487, 889, 1126, 1394
AluI AGCT 9 cut(s) 13, 31, 43, 52, 465, 487, 889, 1126, 1394
Alw21I GWGCWC 1 cut(s) 54
Alw26I GTCTC 2 cut(s) 744, 994
AlwI GGATC 4 cut(s) 239, 345, 953, 1364
AoxI GGCC 2 cut(s) 224, 1021
ApeKI GCWGC 4 cut(s) 1052, 1100, 1126, 1323
ApoI RAATTY 1 cut(s) 356
Asp700I GAANNNNTTC 1 cut(s) 1007
AspS9I GGNCC 6 cut(s) 855, 867, 1022, 1257, 1308, 1315
AsuC2I CCSGG 1 cut(s) 893
AvaII GGWCC 5 cut(s) 855, 867, 1257, 1308, 1315
BanI GGYRCC 1 cut(s) 573
BanII GRGCYC 1 cut(s) 54
BauI CACGAG 3 cut(s) 524, 741, 1335
BbsI GAAGAC 2 cut(s) 96, 384
Bbv12I GWGCWC 1 cut(s) 54
BbvI GCAGC 4 cut(s) 1039, 1087, 1113, 1310
BccI CCATC 5 cut(s) 141, 147, 506, 585, 878
BceAI ACGGC 2 cut(s) 79, 417
BciT130I CCWGG 3 cut(s) 228, 1020, 1320
BciVI GTATCC 1 cut(s) 169
BcnI CCSGG 1 cut(s) 893
BcoDI GTCTC 2 cut(s) 744, 994
BfaI CTAG 4 cut(s) 641, 720, 1299, 1395
BfmI CTRYAG 3 cut(s) 630, 1127, 1389
BfuI GTATCC 1 cut(s) 169
BglII AGATCT 1 cut(s) 367
BisI GCNGC 4 cut(s) 1053, 1101, 1127, 1324
BlsI GCNGC 4 cut(s) 1054, 1102, 1128, 1325
Bme1390I CCNGG 4 cut(s) 228, 893, 1020, 1320
Bme18I GGWCC 5 cut(s) 855, 867, 1257, 1308, 1315
BmgT120I GGNCC 6 cut(s) 855, 867, 1022, 1257, 1308, 1315
BmiI GGNNCC 3 cut(s) 575, 868, 1317
BmrFI CCNGG 4 cut(s) 228, 893, 1020, 1320
BmsI GCATC 2 cut(s) 464, 1062
BoxI GACNNNNGTC 2 cut(s) 660, 1313
BpiI GAAGAC 2 cut(s) 96, 384
BpmI CTGGAG 1 cut(s) 454
Bpu10I CCTNAGC 1 cut(s) 1034
BpuEI CTTGAG 3 cut(s) 276, 348, 1273
BpuMI CCSGG 1 cut(s) 893
BsaAI YACGTR 1 cut(s) 679
BsaI GGTCTC 2 cut(s) 744, 994
BsaJI CCNNGG 4 cut(s) 227, 503, 1311, 1318
BsaXI ACNNNNNCTCC 2 cut(s) 627, 657
Bsc4I CCNNNNNNNGG 3 cut(s) 504, 786, 864
Bse1I ACTGG 3 cut(s) 415, 780, 920
BseBI CCWGG 3 cut(s) 228, 1020, 1320
BseDI CCNNGG 4 cut(s) 227, 503, 1311, 1318
BseGI GGATG 8 cut(s) 133, 158, 498, 577, 815, 870, 1215, 1378
BseLI CCNNNNNNNGG 3 cut(s) 504, 786, 864
BseMII CTCAG 6 cut(s) 152, 474, 506, 552, 833, 1025
BseNI ACTGG 3 cut(s) 415, 780, 920
BseRI GAGGAG 3 cut(s) 60, 63, 66
BseXI GCAGC 4 cut(s) 1039, 1087, 1113, 1310
BseYI CCCAGC 1 cut(s) 589
BsgI GTGCAG 2 cut(s) 444, 1309
BshFI GGCC 2 cut(s) 226, 1023
BshNI GGYRCC 1 cut(s) 573
BsiHKAI GWGCWC 1 cut(s) 54
BsiSI CCGG 1 cut(s) 893
BslFI GGGAC 2 cut(s) 880, 1301
BslI CCNNNNNNNGG 3 cut(s) 504, 786, 864
BsmAI GTCTC 2 cut(s) 744, 994
BsmFI GGGAC 2 cut(s) 880, 1301
BsmI GAATGC 2 cut(s) 448, 1170
BsnI GGCC 2 cut(s) 226, 1023
Bso31I GGTCTC 2 cut(s) 744, 994
Bsp1286I GDGCHC 1 cut(s) 54
Bsp143I GATC 6 cut(s) 231, 337, 367, 958, 1039, 1356
Bsp19I CCATGG 1 cut(s) 503
BspACI CCGC 5 cut(s) 689, 749, 1059, 1066, 1365
BspANI GGCC 2 cut(s) 226, 1023
BspCNI CTCAG 6 cut(s) 151, 475, 505, 551, 834, 1026
BspLI GGNNCC 3 cut(s) 575, 868, 1317
BspMAI CTGCAG 2 cut(s) 634, 1131
BspPI GGATC 4 cut(s) 239, 345, 953, 1364
BspQI GCTCTTC 1 cut(s) 3
BspT107I GGYRCC 1 cut(s) 573
BspTNI GGTCTC 2 cut(s) 744, 994
BsrBI CCGCTC 1 cut(s) 1066
BsrI ACTGG 3 cut(s) 415, 780, 920
BssECI CCNNGG 4 cut(s) 227, 503, 1311, 1318
BssMI GATC 6 cut(s) 231, 337, 367, 958, 1039, 1356
BssSI CACGAG 3 cut(s) 524, 741, 1335
BssT1I CCWWGG 2 cut(s) 503, 1311
Bst2BI CACGAG 3 cut(s) 524, 741, 1335
Bst2UI CCWGG 3 cut(s) 228, 1020, 1320
Bst4CI ACNGT 5 cut(s) 253, 1008, 1143, 1274, 1330
Bst6I CTCTTC 2 cut(s) 3, 599
BstBAI YACGTR 1 cut(s) 679
BstC8I GCNNGC 5 cut(s) 15, 717, 1050, 1057, 1363
BstDEI CTNAG 7 cut(s) 23, 138, 483, 492, 538, 842, 1034
BstDSI CCRYGG 1 cut(s) 503
BstF5I GGATG 8 cut(s) 133, 158, 498, 577, 815, 870, 1215, 1378
BstKTI GATC 6 cut(s) 234, 340, 370, 961, 1042, 1359
BstMAI GTCTC 2 cut(s) 744, 994
BstMBI GATC 6 cut(s) 231, 337, 367, 958, 1039, 1356
BstMWI GCNNNNNNNGC 4 cut(s) 19, 28, 49, 1072
BstNI CCWGG 3 cut(s) 228, 1020, 1320
BstPAI GACNNNNGTC 2 cut(s) 660, 1313
BstSCI CCNGG 4 cut(s) 226, 891, 1018, 1318
BstSFI CTRYAG 3 cut(s) 630, 1127, 1389
BstV1I GCAGC 4 cut(s) 1039, 1087, 1113, 1310
BstV2I GAAGAC 2 cut(s) 96, 384
BstX2I RGATCY 3 cut(s) 231, 367, 958
BstXI CCANNNNNNTGG 1 cut(s) 1176
BstYI RGATCY 3 cut(s) 231, 367, 958
BsuI GTATCC 1 cut(s) 169
BsuRI GGCC 2 cut(s) 226, 1023
BtgI CCRYGG 1 cut(s) 503
BtsCI GGATG 8 cut(s) 133, 158, 498, 577, 815, 870, 1215, 1378
BtsIMutI CAGTG 3 cut(s) 480, 927, 1139
Cac8I GCNNGC 5 cut(s) 15, 717, 1050, 1057, 1363
Cfr13I GGNCC 6 cut(s) 855, 867, 1022, 1257, 1308, 1315
Csp6I GTAC 3 cut(s) 306, 550, 823
CviAII CATG 7 cut(s) 19, 303, 334, 504, 785, 949, 985
CviQI GTAC 3 cut(s) 306, 550, 823
DdeI CTNAG 7 cut(s) 23, 138, 483, 492, 538, 842, 1034
DpnI GATC 6 cut(s) 233, 339, 369, 960, 1041, 1358
DpnII GATC 6 cut(s) 231, 337, 367, 958, 1039, 1356
DrdI GACNNNNNNGTC 1 cut(s) 874
DseDI GACNNNNNNGTC 1 cut(s) 874
Eam1104I CTCTTC 2 cut(s) 3, 599
EarI CTCTTC 2 cut(s) 3, 599
Ecl136II GAGCTC 1 cut(s) 52
Eco130I CCWWGG 2 cut(s) 503, 1311
Eco147I AGGCCT 1 cut(s) 226
Eco24I GRGCYC 1 cut(s) 54
Eco31I GGTCTC 2 cut(s) 744, 994
Eco47I GGWCC 5 cut(s) 855, 867, 1257, 1308, 1315
Eco53kI GAGCTC 1 cut(s) 52
EcoICRI GAGCTC 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 1315
EcoRI GAATTC 1 cut(s) 356
EcoRII CCWGG 3 cut(s) 226, 1018, 1318
EcoT14I CCWWGG 2 cut(s) 503, 1311
EcoT38I GRGCYC 1 cut(s) 54
ErhI CCWWGG 2 cut(s) 503, 1311
FaeI CATG 7 cut(s) 22, 306, 337, 507, 788, 952, 988
FalI AAGNNNNNCTT 1 cut(s) 29
FaqI GGGAC 2 cut(s) 880, 1301
FatI CATG 7 cut(s) 18, 302, 333, 503, 784, 948, 984
FauI CCCGC 1 cut(s) 696
FauNDI CATATG 2 cut(s) 1118, 1175
FblI GTMKAC 1 cut(s) 1084
Fnu4HI GCNGC 4 cut(s) 1053, 1101, 1127, 1324
FokI GGATG 8 cut(s) 120, 165, 485, 564, 822, 857, 1222, 1365
FriOI GRGCYC 1 cut(s) 54
Fsp4HI GCNGC 4 cut(s) 1053, 1101, 1127, 1324
FspBI CTAG 4 cut(s) 641, 720, 1299, 1395
GluI GCNGC 4 cut(s) 1053, 1101, 1127, 1324
GsaI CCCAGC 1 cut(s) 593
GsuI CTGGAG 1 cut(s) 454
HaeIII GGCC 2 cut(s) 226, 1023
HapII CCGG 1 cut(s) 893
Hin1II CATG 7 cut(s) 22, 306, 337, 507, 788, 952, 988
HincII GTYRAC 3 cut(s) 535, 954, 1159
HindII GTYRAC 3 cut(s) 535, 954, 1159
HinfI GANTC 4 cut(s) 289, 455, 760, 836
HpaI GTTAAC 1 cut(s) 954
HpaII CCGG 1 cut(s) 893
Hpy166II GTNNAC 6 cut(s) 535, 550, 855, 954, 1085, 1159
Hpy188I TCNGA 7 cut(s) 147, 460, 495, 582, 765, 1239, 1278
Hpy188III TCNNGA 9 cut(s) 47, 238, 341, 365, 390, 471, 540, 962, 1260
Hpy8I GTNNAC 6 cut(s) 535, 550, 855, 954, 1085, 1159
HpyAV CCTTC 5 cut(s) 90, 567, 809, 959, 1144
HpyCH4III ACNGT 5 cut(s) 253, 1008, 1143, 1274, 1330
HpyCH4IV ACGT 2 cut(s) 381, 678
HpyCH4V TGCA 6 cut(s) 58, 425, 632, 1116, 1129, 1326
HpyF10VI GCNNNNNNNGC 4 cut(s) 19, 28, 49, 1072
HpyF3I CTNAG 7 cut(s) 23, 138, 483, 492, 538, 842, 1034
HpySE526I ACGT 2 cut(s) 381, 678
Hsp92II CATG 7 cut(s) 22, 306, 337, 507, 788, 952, 988
KspAI GTTAAC 1 cut(s) 954
Kzo9I GATC 6 cut(s) 231, 337, 367, 958, 1039, 1356
LguI GCTCTTC 1 cut(s) 3
LmnI GCTCC 2 cut(s) 894, 1123
Lsp1109I GCAGC 4 cut(s) 1039, 1087, 1113, 1310
LweI GCATC 2 cut(s) 464, 1062
MaeI CTAG 4 cut(s) 641, 720, 1299, 1395
MaeII ACGT 2 cut(s) 381, 678
MaeIII GTNAC 2 cut(s) 912, 1294
MalI GATC 6 cut(s) 233, 339, 369, 960, 1041, 1358
MbiI CCGCTC 1 cut(s) 1066
MboI GATC 6 cut(s) 231, 337, 367, 958, 1039, 1356
MflI RGATCY 3 cut(s) 231, 367, 958
MhlI GDGCHC 1 cut(s) 54
MluCI AATT 2 cut(s) 356, 1213
MlyI GAGTC 2 cut(s) 283, 754
MmeI TCCRAC 2 cut(s) 787, 903
MroXI GAANNNNTTC 1 cut(s) 1007
MseI TTAA 2 cut(s) 909, 953
MslI CAYNNNNRTG 3 cut(s) 528, 1144, 1208
MspI CCGG 1 cut(s) 893
MspR9I CCNGG 4 cut(s) 228, 893, 1020, 1320
Mva1269I GAATGC 2 cut(s) 448, 1170
MvaI CCWGG 3 cut(s) 228, 1020, 1320
MwoI GCNNNNNNNGC 4 cut(s) 19, 28, 49, 1072
NciI CCSGG 1 cut(s) 893
NcoI CCATGG 1 cut(s) 503
NdeI CATATG 2 cut(s) 1118, 1175
NdeII GATC 6 cut(s) 231, 337, 367, 958, 1039, 1356
NlaIII CATG 7 cut(s) 22, 306, 337, 507, 788, 952, 988
NlaIV GGNNCC 3 cut(s) 575, 868, 1317
NmuCI GTSAC 2 cut(s) 912, 1294
OliI CACNNNNGTG 1 cut(s) 1144
PceI AGGCCT 1 cut(s) 226
PciSI GCTCTTC 1 cut(s) 3
PcsI WCGNNNNNNNCGW 1 cut(s) 1052
PctI GAATGC 2 cut(s) 448, 1170
PdmI GAANNNNTTC 1 cut(s) 1007
PfeI GAWTC 2 cut(s) 455, 836
PflFI GACNNNGTC 1 cut(s) 986
PflMI CCANNNNNTGG 1 cut(s) 504
PkrI GCNGC 4 cut(s) 1054, 1102, 1128, 1325
PleI GAGTC 2 cut(s) 283, 754
PpsI GAGTC 2 cut(s) 283, 754
Ppu21I YACGTR 1 cut(s) 679
PpuMI RGGWCCY 1 cut(s) 1315
PshAI GACNNNNGTC 2 cut(s) 660, 1313
Psp124BI GAGCTC 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 1315
Psp6I CCWGG 3 cut(s) 226, 1018, 1318
PspFI CCCAGC 1 cut(s) 589
PspGI CCWGG 3 cut(s) 226, 1018, 1318
PspN4I GGNNCC 3 cut(s) 575, 868, 1317
PspPI GGNCC 6 cut(s) 855, 867, 1022, 1257, 1308, 1315
PspPPI RGGWCCY 1 cut(s) 1315
PstI CTGCAG 2 cut(s) 634, 1131
PsuI RGATCY 3 cut(s) 231, 367, 958
PsyI GACNNNGTC 1 cut(s) 986
RsaI GTAC 3 cut(s) 307, 551, 824
RsaNI GTAC 3 cut(s) 306, 550, 823
RseI CAYNNNNRTG 3 cut(s) 528, 1144, 1208
SacI GAGCTC 1 cut(s) 54
SapI GCTCTTC 1 cut(s) 3
SaqAI TTAA 2 cut(s) 909, 953
SatI GCNGC 4 cut(s) 1053, 1101, 1127, 1324
Sau3AI GATC 6 cut(s) 231, 337, 367, 958, 1039, 1356
Sau96I GGNCC 6 cut(s) 855, 867, 1022, 1257, 1308, 1315
SchI GAGTC 2 cut(s) 283, 754
ScrFI CCNGG 4 cut(s) 228, 893, 1020, 1320
SduI GDGCHC 1 cut(s) 54
SfaNI GCATC 2 cut(s) 464, 1062
SfcI CTRYAG 3 cut(s) 630, 1127, 1389
SinI GGWCC 5 cut(s) 855, 867, 1257, 1308, 1315
SmiMI CAYNNNNRTG 3 cut(s) 528, 1144, 1208
SmlI CTYRAG 3 cut(s) 291, 363, 1252
SmoI CTYRAG 3 cut(s) 291, 363, 1252
Sse9I AATT 2 cut(s) 356, 1213
SseBI AGGCCT 1 cut(s) 226
SsiI CCGC 5 cut(s) 689, 749, 1059, 1066, 1365
SspMI CTAG 4 cut(s) 641, 720, 1299, 1395
SstI GAGCTC 1 cut(s) 54
StuI AGGCCT 1 cut(s) 226
StyD4I CCNGG 4 cut(s) 226, 891, 1018, 1318
StyI CCWWGG 2 cut(s) 503, 1311
TaaI ACNGT 5 cut(s) 253, 1008, 1143, 1274, 1330
TaiI ACGT 2 cut(s) 384, 681
TaqI TCGA 2 cut(s) 277, 654
TaqII GACCGA 1 cut(s) 26
TasI AATT 2 cut(s) 356, 1213
TfiI GAWTC 2 cut(s) 455, 836
Tru1I TTAA 2 cut(s) 909, 953
Tru9I TTAA 2 cut(s) 909, 953
TscAI CASTG 3 cut(s) 487, 927, 1146
TseFI GTSAC 2 cut(s) 912, 1294
TseI GCWGC 4 cut(s) 1052, 1100, 1126, 1323
Tsp45I GTSAC 2 cut(s) 912, 1294
TspDTI ATGAA 6 cut(s) 81, 937, 1000, 1226, 1283, 1367
TspGWI ACGGA 6 cut(s) 102, 165, 301, 323, 410, 1209
TspRI CASTG 3 cut(s) 487, 927, 1146
Tth111I GACNNNGTC 1 cut(s) 986
Van91I CCANNNNNTGG 1 cut(s) 504
VpaK11BI GGWCC 5 cut(s) 855, 867, 1257, 1308, 1315
XapI RAATTY 1 cut(s) 356
XcmI CCANNNNNNNNNTGG 1 cut(s) 397
XmiI GTMKAC 1 cut(s) 1084
XmnI GAANNNNTTC 1 cut(s) 1007
XspI CTAG 4 cut(s) 641, 720, 1299, 1395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.