Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0006834

Physical Location & Seq

Genomic Coordinates Reverse (-)

51856084 .. 51859252

Gene Structure 3169 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G025750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1410 bp

ATGGAAGGACTGGTCATGCTGAGGCAGCTCATCGGTCAGCTTCAGGAGTTCGTTCAATTCCACGGCTCTCCACCTCAACCTCAACCTCATCTTCTTCTTCATCTTCAGCAGCAGCAGCAGCAGCAGCTTCCGCTACTCAACCACCACCACCACCACCACCGCAGGTGGTGCTCCTCTAATGTTGATGATAGTTCTGTAGATGATTACTACAGTTTTATGATGGCAGCTGGTAAATCTGGAAGTGTCAAGATGTTAGAACCTTCCAAGCCTCCTCCTAGTAAGAGATCTCGTAAGGAGCGAGCCCGGGGTAAATCATCAGGAACGACAAATACCACTGAGCCCATGGAACAACATATTTGGAAAGATTTCCCGGAAGACCTTTATGAAGCTGTTATTGCAAGGCTTCCAATTGCCACATTTTTCCGTTTTCGTTCTGTTTGCAGGAAATGGAATTCCTTGCTGGACTCTGAAAGTTTCTCTCAGCAATGTGCAGAGATCCCACAAGCTAATCCATGGTTTTACACCATCACTCATGAAAACGTGAATTCTGGGGCCATGTATGACCCTTCCTTGAAGAAGTGGCACCATCCCACGATTTCTTCTCTGCCAACAAAGCTGATCGTCTTGCCTGTGGCTTCAGCAGGTGGCCTGGTTTGCTTTCTCGATATTGGTAATAGAAACTTCTACGTGTGTAACCCTCTCAATCAATCTTTTAAAGAGTTGCCAGCCAGGTCAGTTAAGGTCTGGTCTCGTATTGCTGTGGGGATGACTCTGAATGGGAGTTCTACCAGTGGGGGCTACAAGATCATGTGGGTGGGTTGCGATGGTGAGTATGAAGTTTATGACTCACTAAGGAACTCTTGGACTCGCCCTGGAAGCATGCCATCAAGTGTTAAGCTTCCACTATCCCTGAATTTCCGATCACAGGCTGTTACAATTGATAGCACACTTTACTTCATGCGGTCAGACCCTGAAGGAATTGTGTCATATGATATGGTCACTGGGGTTTGGAAGCAGTTTATAATTCCCACACCGCTGCATCTGACTGACCACACACTTGCTGAATGTGGAGGCCGGATCATGCTGGTGGGATTGTTGTCAAAGAATGCTGCTACGTGCGTATGCATTTGGGAGCTGCAGAAAATGACACTTTTGTGGAAGGAGGTTGACAGAATGCCAAATATATGGTGCTTGGAGTTTTACGGCAAGCACGTTAGGATGACTTGCCTGGGTAACAAAGGCTTACTCATGTTGTCCTTGAGGTCAAGACAAATGAACCGCTTGGTTACTTACAATGTTTCAAGCAGGGAATGGCTTAAGGTTCCTGGTTGCGTGGTGCCACATGGGAGGAAGCGGCAATGGATTGCATGTGGCACTTCATTTCATCCATGCCTGACTGCTGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009965 GO:0009966 GO:0009987 GO:0010016 GO:0010051 GO:0010305 GO:0010498 GO:0010646 GO:0010928 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0030163 GO:0031146 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048366 GO:0048367 GO:0048583 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0060776 GO:0065007 GO:0070647 GO:0071704 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

469

Amino Acids

53.31

Weight (kDa)

9.17

Isoelectric Point (pI)

54.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	120 - 159	5.5e-08	F-box domain
FBA_1	PF07734	187 - 394	1e-08	F-box associated beta propeller domain
b-prop_At3g26010-like	PF24750	204 - 389	2.6e-09	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27340
fragaria_vesca	FvH4_4g23620 FvH4_4g23620 FvH4_4g23620
malus_domestica	MD13G1120600.v1.1
prunus_persica	Prupe.1G224600_v2.0.a1 Prupe.1G224600_v2.0.a1 Prupe.1G224600_v2.0.a1 Prupe.1G224600_v2.0.a1 Prupe.1G224600_v2.0.a1 Prupe.1G224600_v2.0.a1 Prupe.1G224600_v2.0.a1
pyrus_communis	pycom13g10500 pycom16g10300
rosa_chinensis	RchiOBHm_Chr4g0430081
rosa_laevigata	RLG00000007005
rosa_multiflora	Rmu_ssc0000150.1_g000027
rosa_roxburghii	Rroxscaffold_5G00371890
rosa_rugosa	Rorug04G0239900 Rorug04G0239900 Rorug04G0240000
rosa_samantha	Rh4AG297000 Rh4BG303500 Rh4CG319000 Rh4DG300700
rosa_wichuraiana	Rw4G025750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1022
AarI	CACCTGC	2 cut(s)	153, 632
Acc36I	ACCTGC	2 cut(s)	153, 632
AccB1I	GGYRCC	2 cut(s)	582, 1336
AciI	CCGC	6 cut(s)	131, 160, 961, 1034, 1279, 1354
AclWI	GGATC	2 cut(s)	490, 1085
AcsI	RAATTY	3 cut(s)	451, 544, 913
AcuI	CTGAAG	4 cut(s)	26, 89, 621, 993
AfiI	CCNNNNNNNGG	1 cut(s)	925
AflII	CTTAAG	1 cut(s)	1316
AflIII	ACRYGT	1 cut(s)	687
AgsI	TTSAA	3 cut(s)	56, 574, 1302
AjnI	CCWGG	5 cut(s)	648, 728, 871, 1227, 1324
AleI	CACNNNNGTG	1 cut(s)	1153
AluBI	AGCT	9 cut(s)	28, 40, 127, 227, 389, 506, 616, 898, 1135
AluI	AGCT	9 cut(s)	28, 40, 127, 227, 389, 506, 616, 898, 1135
Alw21I	GWGCWC	1 cut(s)	173
Alw26I	GTCTC	1 cut(s)	753
AlwI	GGATC	2 cut(s)	490, 1085
AlwNI	CAGNNNCTG	1 cut(s)	971
Ama87I	CYCGRG	1 cut(s)	303
AoxI	GGCC	3 cut(s)	552, 646, 1072
ApoI	RAATTY	3 cut(s)	451, 544, 913
Asp700I	GAANNNNTTC	1 cut(s)	365
AspS9I	GGNCC	1 cut(s)	552
AsuC2I	CCSGG	3 cut(s)	304, 305, 371
AsuHPI	GGTGA	1 cut(s)	839
AvaI	CYCGRG	1 cut(s)	303
BanI	GGYRCC	2 cut(s)	582, 1336
BanII	GRGCYC	2 cut(s)	304, 342
BbsI	GAAGAC	1 cut(s)	381
Bbv12I	GWGCWC	1 cut(s)	173
BbvCI	CCTCAGC	1 cut(s)	20
BccI	CCATC	5 cut(s)	214, 533, 594, 818, 892
BceAI	ACGGC	2 cut(s)	79, 1219
BciT130I	CCWGG	5 cut(s)	650, 730, 873, 1229, 1326
BcnI	CCSGG	3 cut(s)	304, 305, 371
BcoDI	GTCTC	1 cut(s)	753
BfaI	CTAG	1 cut(s)	276
BfmI	CTRYAG	3 cut(s)	195, 208, 1136
BfrI	CTTAAG	1 cut(s)	1316
BfuAI	ACCTGC	2 cut(s)	153, 632
BglII	AGATCT	1 cut(s)	284
Bme1390I	CCNGG	8 cut(s)	304, 305, 371, 650, 730, 873, 1229, 1326
BmeT110I	CYCGRG	1 cut(s)	303
BmgT120I	GGNCC	1 cut(s)	552
BmiI	GGNNCC	4 cut(s)	553, 584, 1323, 1338
BmrFI	CCNGG	8 cut(s)	304, 305, 371, 650, 730, 873, 1229, 1326
BmrI	ACTGGG	1 cut(s)	1011
BmsI	GCATC	1 cut(s)	1048
BmuI	ACTGGG	1 cut(s)	1011
BpiI	GAAGAC	1 cut(s)	381
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	1279
BpuMI	CCSGG	3 cut(s)	304, 305, 371
BsaAI	YACGTR	2 cut(s)	688, 1116
BsaI	GGTCTC	1 cut(s)	753
BsaJI	CCNNGG	7 cut(s)	61, 303, 304, 342, 512, 871, 1228
Bsc4I	CCNNNNNNNGG	1 cut(s)	925
Bse1I	ACTGG	3 cut(s)	15, 789, 1006
Bse3DI	GCAATG	2 cut(s)	491, 1364
BseBI	CCWGG	5 cut(s)	650, 730, 873, 1229, 1326
BseDI	CCNNGG	7 cut(s)	61, 303, 304, 342, 512, 871, 1228
BseGI	GGATG	4 cut(s)	586, 771, 1224, 1384
BseLI	CCNNNNNNNGG	1 cut(s)	925
BseMI	GCAATG	2 cut(s)	491, 1364
BseMII	CTCAG	3 cut(s)	11, 327, 494
BseNI	ACTGG	3 cut(s)	15, 789, 1006
BseRI	GAGGAG	2 cut(s)	163, 261
BsgI	GTGCAG	1 cut(s)	510
BshFI	GGCC	3 cut(s)	554, 648, 1074
BshNI	GGYRCC	2 cut(s)	582, 1336
BsiHKAI	GWGCWC	1 cut(s)	173
BsiHKCI	CYCGRG	1 cut(s)	303
BsiSI	CCGG	3 cut(s)	304, 371, 1075
BslI	CCNNNNNNNGG	1 cut(s)	925
BsmAI	GTCTC	1 cut(s)	753
BsmI	GAATGC	2 cut(s)	1111, 1179
BsnI	GGCC	3 cut(s)	554, 648, 1074
Bso31I	GGTCTC	1 cut(s)	753
BsoBI	CYCGRG	1 cut(s)	303
Bsp1286I	GDGCHC	3 cut(s)	173, 304, 342
Bsp143I	GATC	6 cut(s)	284, 495, 618, 804, 920, 1077
Bsp19I	CCATGG	2 cut(s)	342, 512
BspACI	CCGC	6 cut(s)	131, 160, 961, 1034, 1279, 1354
BspANI	GGCC	3 cut(s)	554, 648, 1074
BspCNI	CTCAG	3 cut(s)	12, 328, 493
BspHI	TCATGA	1 cut(s)	532
BspLI	GGNNCC	4 cut(s)	553, 584, 1323, 1338
BspMAI	CTGCAG	1 cut(s)	1140
BspMI	ACCTGC	2 cut(s)	153, 632
BspPI	GGATC	2 cut(s)	490, 1085
BspT107I	GGYRCC	2 cut(s)	582, 1336
BspTI	CTTAAG	1 cut(s)	1316
BspTNI	GGTCTC	1 cut(s)	753
BsrDI	GCAATG	2 cut(s)	491, 1364
BsrI	ACTGG	3 cut(s)	15, 789, 1006
BssECI	CCNNGG	7 cut(s)	61, 303, 304, 342, 512, 871, 1228
BssMI	GATC	6 cut(s)	284, 495, 618, 804, 920, 1077
BssT1I	CCWWGG	2 cut(s)	342, 512
Bst2UI	CCWGG	5 cut(s)	650, 730, 873, 1229, 1326
Bst4CI	ACNGT	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	1316
BstAPI	GCANNNNNTGC	1 cut(s)	168
BstBAI	YACGTR	2 cut(s)	688, 1116
BstC8I	GCNNGC	4 cut(s)	300, 726, 881, 1208
BstDEI	CTNAG	4 cut(s)	20, 336, 480, 851
BstDSI	CCRYGG	3 cut(s)	61, 342, 512
BstF5I	GGATG	4 cut(s)	586, 771, 1224, 1384
BstKTI	GATC	6 cut(s)	287, 498, 621, 807, 923, 1080
BstMAI	GTCTC	1 cut(s)	753
BstMBI	GATC	6 cut(s)	284, 495, 618, 804, 920, 1077
BstNI	CCWGG	5 cut(s)	650, 730, 873, 1229, 1326
BstNSI	RCATGY	2 cut(s)	883, 1371
BstSCI	CCNGG	8 cut(s)	302, 303, 369, 648, 728, 871, 1227, 1324
BstSFI	CTRYAG	3 cut(s)	195, 208, 1136
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	2 cut(s)	284, 495
BstXI	CCANNNNNNTGG	1 cut(s)	1185
BstYI	RGATCY	2 cut(s)	284, 495
BsuRI	GGCC	3 cut(s)	554, 648, 1074
BtgI	CCRYGG	3 cut(s)	61, 342, 512
BtgZI	GCGATG	1 cut(s)	837
BtsCI	GGATG	4 cut(s)	586, 771, 1224, 1384
BtsIMutI	CAGTG	3 cut(s)	333, 796, 999
BveI	ACCTGC	2 cut(s)	153, 632
Cac8I	GCNNGC	4 cut(s)	300, 726, 881, 1208
CaiI	CAGNNNCTG	1 cut(s)	971
CciI	TCATGA	1 cut(s)	532
Cfr13I	GGNCC	1 cut(s)	552
Cfr9I	CCCGGG	1 cut(s)	303
DdeI	CTNAG	4 cut(s)	20, 336, 480, 851
DpnI	GATC	6 cut(s)	286, 497, 620, 806, 922, 1079
DpnII	GATC	6 cut(s)	284, 495, 618, 804, 920, 1077
DraI	TTTAAA	1 cut(s)	715
Eco130I	CCWWGG	2 cut(s)	342, 512
Eco24I	GRGCYC	2 cut(s)	304, 342
Eco31I	GGTCTC	1 cut(s)	753
Eco57I	CTGAAG	4 cut(s)	26, 89, 621, 993
Eco88I	CYCGRG	1 cut(s)	303
EcoRI	GAATTC	2 cut(s)	451, 544
EcoRII	CCWGG	5 cut(s)	648, 728, 871, 1227, 1324
EcoT14I	CCWWGG	2 cut(s)	342, 512
EcoT22I	ATGCAT	1 cut(s)	1127
EcoT38I	GRGCYC	2 cut(s)	304, 342
ErhI	CCWWGG	2 cut(s)	342, 512
FalI	AAGNNNNNCTT	2 cut(s)	844, 876
FauNDI	CATATG	1 cut(s)	988
FokI	GGATG	4 cut(s)	573, 778, 1231, 1371
FriOI	GRGCYC	2 cut(s)	304, 342
FspBI	CTAG	1 cut(s)	276
HaeIII	GGCC	3 cut(s)	554, 648, 1074
HapII	CCGG	3 cut(s)	304, 371, 1075
HincII	GTYRAC	1 cut(s)	1168
HindII	GTYRAC	1 cut(s)	1168
HindIII	AAGCTT	1 cut(s)	896
HinfI	GANTC	4 cut(s)	464, 769, 845, 865
HpaII	CCGG	3 cut(s)	304, 371, 1075
HphI	GGTGA	1 cut(s)	839
Hpy166II	GTNNAC	1 cut(s)	1168
Hpy188I	TCNGA	5 cut(s)	469, 774, 920, 967, 1044
Hpy188III	TCNNGA	7 cut(s)	44, 237, 247, 318, 533, 662, 1266
Hpy8I	GTNNAC	1 cut(s)	1168
HpyAV	CCTTC	4 cut(s)	270, 576, 968, 1153
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	4 cut(s)	540, 687, 1115, 1212
HpyCH4V	TGCA	7 cut(s)	398, 441, 491, 1039, 1125, 1138, 1367
HpyF3I	CTNAG	4 cut(s)	20, 336, 480, 851
HpySE526I	ACGT	4 cut(s)	540, 687, 1115, 1212
Kzo9I	GATC	6 cut(s)	284, 495, 618, 804, 920, 1077
LmnI	GCTCC	3 cut(s)	176, 295, 1132
LweI	GCATC	1 cut(s)	1048
MaeI	CTAG	1 cut(s)	276
MaeII	ACGT	4 cut(s)	540, 687, 1115, 1212
MaeIII	GTNAC	5 cut(s)	692, 931, 997, 1232, 1285
MalI	GATC	6 cut(s)	286, 497, 620, 806, 922, 1079
MboI	GATC	6 cut(s)	284, 495, 618, 804, 920, 1077
MboII	GAAGA	7 cut(s)	83, 86, 89, 95, 386, 586, 591
MfeI	CAATTG	2 cut(s)	408, 936
MflI	RGATCY	2 cut(s)	284, 495
MhlI	GDGCHC	3 cut(s)	173, 304, 342
MluCI	AATT	8 cut(s)	56, 408, 451, 544, 913, 936, 978, 1023
MlyI	GAGTC	4 cut(s)	458, 763, 839, 859
Mph1103I	ATGCAT	1 cut(s)	1127
MroXI	GAANNNNTTC	1 cut(s)	365
MseI	TTAA	4 cut(s)	714, 738, 894, 1317
MslI	CAYNNNNRTG	3 cut(s)	812, 1085, 1153
MspA1I	CMGCKG	2 cut(s)	227, 1036
MspCI	CTTAAG	1 cut(s)	1316
MspI	CCGG	3 cut(s)	304, 371, 1075
MspR9I	CCNGG	8 cut(s)	304, 305, 371, 650, 730, 873, 1229, 1326
MunI	CAATTG	2 cut(s)	408, 936
Mva1269I	GAATGC	2 cut(s)	1111, 1179
MvaI	CCWGG	5 cut(s)	650, 730, 873, 1229, 1326
NciI	CCSGG	3 cut(s)	304, 305, 371
NcoI	CCATGG	2 cut(s)	342, 512
NdeI	CATATG	1 cut(s)	988
NdeII	GATC	6 cut(s)	284, 495, 618, 804, 920, 1077
NlaIV	GGNNCC	4 cut(s)	553, 584, 1323, 1338
NmuCI	GTSAC	1 cut(s)	997
NsiI	ATGCAT	1 cut(s)	1127
NspI	RCATGY	2 cut(s)	883, 1371
OliI	CACNNNNGTG	1 cut(s)	1153
PaeI	GCATGC	1 cut(s)	883
PagI	TCATGA	1 cut(s)	532
PaqCI	CACCTGC	2 cut(s)	153, 632
PcsI	WCGNNNNNNNCGW	2 cut(s)	295, 1209
PctI	GAATGC	2 cut(s)	1111, 1179
PdmI	GAANNNNTTC	1 cut(s)	365
PfoI	TCCNGGA	1 cut(s)	369
PleI	GAGTC	4 cut(s)	458, 763, 839, 859
PpsI	GAGTC	4 cut(s)	458, 763, 839, 859
Ppu21I	YACGTR	2 cut(s)	688, 1116
PsiI	TTATAA	1 cut(s)	1022
Psp6I	CCWGG	5 cut(s)	648, 728, 871, 1227, 1324
PspGI	CCWGG	5 cut(s)	648, 728, 871, 1227, 1324
PspN4I	GGNNCC	4 cut(s)	553, 584, 1323, 1338
PspPI	GGNCC	1 cut(s)	552
PsrI	GAACNNNNNNTAC	2 cut(s)	313, 345
PstI	CTGCAG	1 cut(s)	1140
PstNI	CAGNNNCTG	1 cut(s)	971
PsuI	RGATCY	2 cut(s)	284, 495
PvuII	CAGCTG	1 cut(s)	227
RseI	CAYNNNNRTG	3 cut(s)	812, 1085, 1153
SaqAI	TTAA	4 cut(s)	714, 738, 894, 1317
Sau3AI	GATC	6 cut(s)	284, 495, 618, 804, 920, 1077
Sau96I	GGNCC	1 cut(s)	552
SchI	GAGTC	4 cut(s)	458, 763, 839, 859
ScrFI	CCNGG	8 cut(s)	304, 305, 371, 650, 730, 873, 1229, 1326
SduI	GDGCHC	3 cut(s)	173, 304, 342
SfaNI	GCATC	1 cut(s)	1048
SfcI	CTRYAG	3 cut(s)	195, 208, 1136
SmaI	CCCGGG	1 cut(s)	305
SmiMI	CAYNNNNRTG	3 cut(s)	812, 1085, 1153
SmlI	CTYRAG	2 cut(s)	1258, 1316
SmoI	CTYRAG	2 cut(s)	1258, 1316
SphI	GCATGC	1 cut(s)	883
Sse9I	AATT	8 cut(s)	56, 408, 451, 544, 913, 936, 978, 1023
SsiI	CCGC	6 cut(s)	131, 160, 961, 1034, 1279, 1354
SspMI	CTAG	1 cut(s)	276
StyD4I	CCNGG	8 cut(s)	302, 303, 369, 648, 728, 871, 1227, 1324
StyI	CCWWGG	2 cut(s)	342, 512
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	4 cut(s)	543, 690, 1118, 1215
TaqI	TCGA	1 cut(s)	663
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	8 cut(s)	56, 408, 451, 544, 913, 936, 978, 1023
TauI	GCSGC	1 cut(s)	1357
Tru1I	TTAA	4 cut(s)	714, 738, 894, 1317
Tru9I	TTAA	4 cut(s)	714, 738, 894, 1317
TscAI	CASTG	3 cut(s)	340, 796, 1006
TseFI	GTSAC	1 cut(s)	997
Tsp45I	GTSAC	1 cut(s)	997
TspDTI	ATGAA	8 cut(s)	89, 399, 549, 849, 946, 1289, 1368, 1373
TspGWI	ACGGA	1 cut(s)	413
TspMI	CCCGGG	1 cut(s)	303
TspRI	CASTG	3 cut(s)	340, 796, 1006
Vha464I	CTTAAG	1 cut(s)	1316
XapI	RAATTY	3 cut(s)	451, 544, 913
XceI	RCATGY	2 cut(s)	883, 1371
XcmI	CCANNNNNNNNNTGG	1 cut(s)	340
XmaI	CCCGGG	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	365
XspI	CTAG	1 cut(s)	276
Zsp2I	ATGCAT	1 cut(s)	1127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.