Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000150.1

Orthogroup ID

OG0006834

Physical Location & Seq

Genomic Coordinates Forward (+)

137629 .. 140806

Gene Structure 3178 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000150.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

atggaaggactggtcatgctgaggcagctcatcggtcagcttcaggagttcgttcaattccacggctctccacctcaacctcaacctcatcttcttcttcatcttcagcagcagcagcagcagcagcttccgctactcaaccaccaccaccaccaccgcaggtggtgctcctctaatgttgatgatagttctgtagatgattactacagttttatgatggcagctggtaaatctggaagtgtcaagatgttagaaccttccaagcctcctcctagtaagagatctcgtaaggagcgagcccggggtaaatcatcaggaacaacaaataccactgagcccatggaacaacatatttggaaagatttcccggaagacctttatgaagctgttattgcaaggcttccaattgccacatttttccgttttcgttctgtttgcaggaaatggaattccttgctggactctgaaagtttctctcagcagtgtgcagagatcccacaagctaatccatggttttacaccatcactcatgaaaacgtgaattctggggccatgtatgacccttccttgaagaagtggcaccatcccacgatttcttctctgccaacaaagctgatcgtcttgcctgtggcttcagcaggtggcctggtttgctttcttgatattggtaatagaaacttctacgtgtgtaaccctctcaatcaatcttttaaagagttgccagccaggtcagttaaggtctggtctcgtattgctgtggggatgactctgaatgggagttctaccagtgggggctacaagatcatgtgggtgggttgtgatggtgagtatgaagtgtatgactcactaaggaactcttggactcgccctggaagcatgccatcaagtgttaagcttccactatccctcaatttccgatcgcaggctgttacaattgatagcacactttacttcatgcggtcagaccctgaaggaattgtgtcatatgatatggtcactggggtttggaagcagtttataattcccacaccgctgcatctgactgaccacacacttgctgaatgtggaggccggatcatgctggtgggattgttgtcaaagaatgctgctacgtgcgtatgcatttgggagctgcagaaaatgacacttttgtggaaggaggttgacagaatgccaaatatatggtgcttggagttttacggcaagcacgttaggatgacttgcctgggtaacaaaggcttactcatgttgtccttgaggtcgagacaaatgaaccgcttggttacttacaatgtttcaagcagggaatggcttaaggttcctggttgcgtggtgccacatgggaggaagcggcaatggattgcatgtggcacttcatttcatccatgcctgactgctgtggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009965 GO:0009966 GO:0009987 GO:0010016 GO:0010051 GO:0010305 GO:0010498 GO:0010646 GO:0010928 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0030163 GO:0031146 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048366 GO:0048367 GO:0048583 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0060776 GO:0065007 GO:0070647 GO:0071704 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

468

Amino Acids

53.18

Weight (kDa)

9.17

Isoelectric Point (pI)

54.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27340
fragaria_vesca	FvH4_4g23620 FvH4_4g23620 FvH4_4g23620
malus_domestica	MD13G1120600.v1.1
prunus_persica	Prupe.1G224600_v2.0.a1 Prupe.1G224600_v2.0.a1 Prupe.1G224600_v2.0.a1 Prupe.1G224600_v2.0.a1 Prupe.1G224600_v2.0.a1 Prupe.1G224600_v2.0.a1 Prupe.1G224600_v2.0.a1
pyrus_communis	pycom13g10500 pycom16g10300
rosa_chinensis	RchiOBHm_Chr4g0430081
rosa_laevigata	RLG00000007005
rosa_multiflora	Rmu_ssc0000150.1_g000027
rosa_roxburghii	Rroxscaffold_5G00371890
rosa_rugosa	Rorug04G0239900 Rorug04G0239900 Rorug04G0240000
rosa_samantha	Rh4AG297000 Rh4BG303500 Rh4CG319000 Rh4DG300700
rosa_wichuraiana	Rw4G025750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1019
AarI	CACCTGC	2 cut(s)	150, 629
Acc36I	ACCTGC	2 cut(s)	150, 629
AccB1I	GGYRCC	2 cut(s)	579, 1333
AciI	CCGC	6 cut(s)	131, 157, 958, 1031, 1276, 1351
AclWI	GGATC	2 cut(s)	487, 1082
AcsI	RAATTY	2 cut(s)	448, 541
AcuI	CTGAAG	4 cut(s)	26, 89, 618, 990
AfiI	CCNNNNNNNGG	1 cut(s)	922
AflII	CTTAAG	1 cut(s)	1313
AflIII	ACRYGT	1 cut(s)	684
AgsI	TTSAA	3 cut(s)	56, 571, 1299
AjnI	CCWGG	5 cut(s)	645, 725, 868, 1224, 1321
AleI	CACNNNNGTG	1 cut(s)	1150
AluBI	AGCT	9 cut(s)	28, 40, 127, 224, 386, 503, 613, 895, 1132
AluI	AGCT	9 cut(s)	28, 40, 127, 224, 386, 503, 613, 895, 1132
Alw21I	GWGCWC	1 cut(s)	170
Alw26I	GTCTC	2 cut(s)	750, 1258
AlwI	GGATC	2 cut(s)	487, 1082
AlwNI	CAGNNNCTG	1 cut(s)	968
Ama87I	CYCGRG	1 cut(s)	300
AoxI	GGCC	3 cut(s)	549, 643, 1069
ApoI	RAATTY	2 cut(s)	448, 541
Asp700I	GAANNNNTTC	1 cut(s)	362
AspS9I	GGNCC	1 cut(s)	549
AsuC2I	CCSGG	3 cut(s)	301, 302, 368
AsuHPI	GGTGA	1 cut(s)	836
AvaI	CYCGRG	1 cut(s)	300
BanI	GGYRCC	2 cut(s)	579, 1333
BanII	GRGCYC	2 cut(s)	301, 339
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	170
BbvCI	CCTCAGC	1 cut(s)	20
BccI	CCATC	5 cut(s)	211, 530, 591, 815, 889
BceAI	ACGGC	2 cut(s)	79, 1216
BciT130I	CCWGG	5 cut(s)	647, 727, 870, 1226, 1323
BcnI	CCSGG	3 cut(s)	301, 302, 368
BcoDI	GTCTC	2 cut(s)	750, 1258
BfaI	CTAG	1 cut(s)	273
BfmI	CTRYAG	3 cut(s)	192, 205, 1133
BfrI	CTTAAG	1 cut(s)	1313
BfuAI	ACCTGC	2 cut(s)	150, 629
BglII	AGATCT	1 cut(s)	281
Bme1390I	CCNGG	8 cut(s)	301, 302, 368, 647, 727, 870, 1226, 1323
BmeT110I	CYCGRG	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	549
BmiI	GGNNCC	4 cut(s)	550, 581, 1320, 1335
BmrFI	CCNGG	8 cut(s)	301, 302, 368, 647, 727, 870, 1226, 1323
BmrI	ACTGGG	1 cut(s)	1008
BmsI	GCATC	1 cut(s)	1045
BmuI	ACTGGG	1 cut(s)	1008
BpiI	GAAGAC	1 cut(s)	378
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	1276
BpuMI	CCSGG	3 cut(s)	301, 302, 368
BsaAI	YACGTR	2 cut(s)	685, 1113
BsaI	GGTCTC	1 cut(s)	750
BsaJI	CCNNGG	7 cut(s)	61, 300, 301, 339, 509, 868, 1225
Bsc4I	CCNNNNNNNGG	1 cut(s)	922
Bse1I	ACTGG	3 cut(s)	15, 786, 1003
Bse3DI	GCAATG	1 cut(s)	1361
BseBI	CCWGG	5 cut(s)	647, 727, 870, 1226, 1323
BseDI	CCNNGG	7 cut(s)	61, 300, 301, 339, 509, 868, 1225
BseGI	GGATG	4 cut(s)	583, 768, 1221, 1381
BseLI	CCNNNNNNNGG	1 cut(s)	922
BseMI	GCAATG	1 cut(s)	1361
BseMII	CTCAG	3 cut(s)	11, 324, 491
BseNI	ACTGG	3 cut(s)	15, 786, 1003
BseRI	GAGGAG	2 cut(s)	160, 258
BsgI	GTGCAG	1 cut(s)	507
Bsh1285I	CGRYCG	1 cut(s)	920
BshFI	GGCC	3 cut(s)	551, 645, 1071
BshNI	GGYRCC	2 cut(s)	579, 1333
BsiEI	CGRYCG	1 cut(s)	920
BsiHKAI	GWGCWC	1 cut(s)	170
BsiHKCI	CYCGRG	1 cut(s)	300
BsiSI	CCGG	3 cut(s)	301, 368, 1072
BslI	CCNNNNNNNGG	1 cut(s)	922
BsmAI	GTCTC	2 cut(s)	750, 1258
BsmI	GAATGC	2 cut(s)	1108, 1176
BsnI	GGCC	3 cut(s)	551, 645, 1071
Bso31I	GGTCTC	1 cut(s)	750
BsoBI	CYCGRG	1 cut(s)	300
Bsp1286I	GDGCHC	3 cut(s)	170, 301, 339
Bsp143I	GATC	6 cut(s)	281, 492, 615, 801, 917, 1074
Bsp19I	CCATGG	2 cut(s)	339, 509
BspACI	CCGC	6 cut(s)	131, 157, 958, 1031, 1276, 1351
BspANI	GGCC	3 cut(s)	551, 645, 1071
BspCNI	CTCAG	3 cut(s)	12, 325, 490
BspHI	TCATGA	1 cut(s)	529
BspLI	GGNNCC	4 cut(s)	550, 581, 1320, 1335
BspMAI	CTGCAG	1 cut(s)	1137
BspMI	ACCTGC	2 cut(s)	150, 629
BspPI	GGATC	2 cut(s)	487, 1082
BspT107I	GGYRCC	2 cut(s)	579, 1333
BspTI	CTTAAG	1 cut(s)	1313
BspTNI	GGTCTC	1 cut(s)	750
BsrDI	GCAATG	1 cut(s)	1361
BsrI	ACTGG	3 cut(s)	15, 786, 1003
BssECI	CCNNGG	7 cut(s)	61, 300, 301, 339, 509, 868, 1225
BssMI	GATC	6 cut(s)	281, 492, 615, 801, 917, 1074
BssT1I	CCWWGG	2 cut(s)	339, 509
Bst2UI	CCWGG	5 cut(s)	647, 727, 870, 1226, 1323
Bst4CI	ACNGT	1 cut(s)	209
BstAFI	CTTAAG	1 cut(s)	1313
BstAPI	GCANNNNNTGC	1 cut(s)	165
BstBAI	YACGTR	2 cut(s)	685, 1113
BstC8I	GCNNGC	5 cut(s)	297, 723, 878, 924, 1205
BstDEI	CTNAG	4 cut(s)	20, 333, 477, 848
BstDSI	CCRYGG	3 cut(s)	61, 339, 509
BstF5I	GGATG	4 cut(s)	583, 768, 1221, 1381
BstKTI	GATC	6 cut(s)	284, 495, 618, 804, 920, 1077
BstMAI	GTCTC	2 cut(s)	750, 1258
BstMBI	GATC	6 cut(s)	281, 492, 615, 801, 917, 1074
BstMCI	CGRYCG	1 cut(s)	920
BstNI	CCWGG	5 cut(s)	647, 727, 870, 1226, 1323
BstNSI	RCATGY	2 cut(s)	880, 1368
BstSCI	CCNGG	8 cut(s)	299, 300, 366, 645, 725, 868, 1224, 1321
BstSFI	CTRYAG	3 cut(s)	192, 205, 1133
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	2 cut(s)	281, 492
BstXI	CCANNNNNNTGG	1 cut(s)	1182
BstYI	RGATCY	2 cut(s)	281, 492
BsuRI	GGCC	3 cut(s)	551, 645, 1071
BtgI	CCRYGG	3 cut(s)	61, 339, 509
BtsCI	GGATG	4 cut(s)	583, 768, 1221, 1381
BtsI	GCAGTG	1 cut(s)	488
BtsIMutI	CAGTG	4 cut(s)	330, 488, 793, 996
BveI	ACCTGC	2 cut(s)	150, 629
Cac8I	GCNNGC	5 cut(s)	297, 723, 878, 924, 1205
CaiI	CAGNNNCTG	1 cut(s)	968
CciI	TCATGA	1 cut(s)	529
Cfr13I	GGNCC	1 cut(s)	549
Cfr9I	CCCGGG	1 cut(s)	300
DdeI	CTNAG	4 cut(s)	20, 333, 477, 848
DpnI	GATC	6 cut(s)	283, 494, 617, 803, 919, 1076
DpnII	GATC	6 cut(s)	281, 492, 615, 801, 917, 1074
DraI	TTTAAA	1 cut(s)	712
Eco130I	CCWWGG	2 cut(s)	339, 509
Eco24I	GRGCYC	2 cut(s)	301, 339
Eco31I	GGTCTC	1 cut(s)	750
Eco57I	CTGAAG	4 cut(s)	26, 89, 618, 990
Eco88I	CYCGRG	1 cut(s)	300
EcoRI	GAATTC	2 cut(s)	448, 541
EcoRII	CCWGG	5 cut(s)	645, 725, 868, 1224, 1321
EcoT14I	CCWWGG	2 cut(s)	339, 509
EcoT22I	ATGCAT	1 cut(s)	1124
EcoT38I	GRGCYC	2 cut(s)	301, 339
ErhI	CCWWGG	2 cut(s)	339, 509
FalI	AAGNNNNNCTT	2 cut(s)	841, 873
FauNDI	CATATG	1 cut(s)	985
FokI	GGATG	4 cut(s)	570, 775, 1228, 1368
FriOI	GRGCYC	2 cut(s)	301, 339
FspBI	CTAG	1 cut(s)	273
HaeIII	GGCC	3 cut(s)	551, 645, 1071
HapII	CCGG	3 cut(s)	301, 368, 1072
HincII	GTYRAC	1 cut(s)	1165
HindII	GTYRAC	1 cut(s)	1165
HindIII	AAGCTT	1 cut(s)	893
HinfI	GANTC	4 cut(s)	461, 766, 842, 862
HpaII	CCGG	3 cut(s)	301, 368, 1072
HphI	GGTGA	1 cut(s)	836
Hpy166II	GTNNAC	1 cut(s)	1165
Hpy188I	TCNGA	5 cut(s)	466, 771, 917, 964, 1041
Hpy188III	TCNNGA	7 cut(s)	44, 234, 244, 315, 530, 659, 1263
Hpy8I	GTNNAC	1 cut(s)	1165
HpyAV	CCTTC	4 cut(s)	267, 573, 965, 1150
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4IV	ACGT	4 cut(s)	537, 684, 1112, 1209
HpyCH4V	TGCA	7 cut(s)	395, 438, 488, 1036, 1122, 1135, 1364
HpyF3I	CTNAG	4 cut(s)	20, 333, 477, 848
HpySE526I	ACGT	4 cut(s)	537, 684, 1112, 1209
Kzo9I	GATC	6 cut(s)	281, 492, 615, 801, 917, 1074
LmnI	GCTCC	3 cut(s)	173, 292, 1129
LweI	GCATC	1 cut(s)	1045
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	4 cut(s)	537, 684, 1112, 1209
MaeIII	GTNAC	5 cut(s)	689, 928, 994, 1229, 1282
MalI	GATC	6 cut(s)	283, 494, 617, 803, 919, 1076
MboI	GATC	6 cut(s)	281, 492, 615, 801, 917, 1074
MboII	GAAGA	7 cut(s)	83, 86, 89, 95, 383, 583, 588
MfeI	CAATTG	2 cut(s)	405, 933
MflI	RGATCY	2 cut(s)	281, 492
MhlI	GDGCHC	3 cut(s)	170, 301, 339
MluCI	AATT	8 cut(s)	56, 405, 448, 541, 910, 933, 975, 1020
MlyI	GAGTC	4 cut(s)	455, 760, 836, 856
Mph1103I	ATGCAT	1 cut(s)	1124
MroXI	GAANNNNTTC	1 cut(s)	362
MseI	TTAA	4 cut(s)	711, 735, 891, 1314
MslI	CAYNNNNRTG	3 cut(s)	809, 1082, 1150
MspA1I	CMGCKG	2 cut(s)	224, 1033
MspCI	CTTAAG	1 cut(s)	1313
MspI	CCGG	3 cut(s)	301, 368, 1072
MspR9I	CCNGG	8 cut(s)	301, 302, 368, 647, 727, 870, 1226, 1323
MunI	CAATTG	2 cut(s)	405, 933
Mva1269I	GAATGC	2 cut(s)	1108, 1176
MvaI	CCWGG	5 cut(s)	647, 727, 870, 1226, 1323
NciI	CCSGG	3 cut(s)	301, 302, 368
NcoI	CCATGG	2 cut(s)	339, 509
NdeI	CATATG	1 cut(s)	985
NdeII	GATC	6 cut(s)	281, 492, 615, 801, 917, 1074
NlaIV	GGNNCC	4 cut(s)	550, 581, 1320, 1335
NmuCI	GTSAC	1 cut(s)	994
NsiI	ATGCAT	1 cut(s)	1124
NspI	RCATGY	2 cut(s)	880, 1368
OliI	CACNNNNGTG	1 cut(s)	1150
PaeI	GCATGC	1 cut(s)	880
PagI	TCATGA	1 cut(s)	529
PaqCI	CACCTGC	2 cut(s)	150, 629
PcsI	WCGNNNNNNNCGW	2 cut(s)	292, 1206
PctI	GAATGC	2 cut(s)	1108, 1176
PdmI	GAANNNNTTC	1 cut(s)	362
PfoI	TCCNGGA	1 cut(s)	366
Ple19I	CGATCG	1 cut(s)	920
PleI	GAGTC	4 cut(s)	455, 760, 836, 856
PpsI	GAGTC	4 cut(s)	455, 760, 836, 856
Ppu21I	YACGTR	2 cut(s)	685, 1113
PsiI	TTATAA	1 cut(s)	1019
Psp6I	CCWGG	5 cut(s)	645, 725, 868, 1224, 1321
PspGI	CCWGG	5 cut(s)	645, 725, 868, 1224, 1321
PspN4I	GGNNCC	4 cut(s)	550, 581, 1320, 1335
PspPI	GGNCC	1 cut(s)	549
PsrI	GAACNNNNNNTAC	2 cut(s)	310, 342
PstI	CTGCAG	1 cut(s)	1137
PstNI	CAGNNNCTG	1 cut(s)	968
PsuI	RGATCY	2 cut(s)	281, 492
PvuI	CGATCG	1 cut(s)	920
PvuII	CAGCTG	1 cut(s)	224
RseI	CAYNNNNRTG	3 cut(s)	809, 1082, 1150
SaqAI	TTAA	4 cut(s)	711, 735, 891, 1314
Sau3AI	GATC	6 cut(s)	281, 492, 615, 801, 917, 1074
Sau96I	GGNCC	1 cut(s)	549
SchI	GAGTC	4 cut(s)	455, 760, 836, 856
ScrFI	CCNGG	8 cut(s)	301, 302, 368, 647, 727, 870, 1226, 1323
SduI	GDGCHC	3 cut(s)	170, 301, 339
SfaNI	GCATC	1 cut(s)	1045
SfcI	CTRYAG	3 cut(s)	192, 205, 1133
SmaI	CCCGGG	1 cut(s)	302
SmiMI	CAYNNNNRTG	3 cut(s)	809, 1082, 1150
SmlI	CTYRAG	2 cut(s)	1255, 1313
SmoI	CTYRAG	2 cut(s)	1255, 1313
SphI	GCATGC	1 cut(s)	880
Sse9I	AATT	8 cut(s)	56, 405, 448, 541, 910, 933, 975, 1020
SsiI	CCGC	6 cut(s)	131, 157, 958, 1031, 1276, 1351
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	8 cut(s)	299, 300, 366, 645, 725, 868, 1224, 1321
StyI	CCWWGG	2 cut(s)	339, 509
TaaI	ACNGT	1 cut(s)	209
TaiI	ACGT	4 cut(s)	540, 687, 1115, 1212
TaqI	TCGA	1 cut(s)	1262
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	8 cut(s)	56, 405, 448, 541, 910, 933, 975, 1020
TauI	GCSGC	1 cut(s)	1354
Tru1I	TTAA	4 cut(s)	711, 735, 891, 1314
Tru9I	TTAA	4 cut(s)	711, 735, 891, 1314
TscAI	CASTG	4 cut(s)	337, 488, 793, 1003
TseFI	GTSAC	1 cut(s)	994
Tsp45I	GTSAC	1 cut(s)	994
TspDTI	ATGAA	8 cut(s)	89, 396, 546, 846, 943, 1286, 1365, 1370
TspGWI	ACGGA	1 cut(s)	410
TspMI	CCCGGG	1 cut(s)	300
TspRI	CASTG	4 cut(s)	337, 488, 793, 1003
Vha464I	CTTAAG	1 cut(s)	1313
XapI	RAATTY	2 cut(s)	448, 541
XceI	RCATGY	2 cut(s)	880, 1368
XcmI	CCANNNNNNNNNTGG	1 cut(s)	337
XmaI	CCCGGG	1 cut(s)	300
XmnI	GAANNNNTTC	1 cut(s)	362
XspI	CTAG	1 cut(s)	273
Zsp2I	ATGCAT	1 cut(s)	1124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.