FvH4_4g23620

F-box only protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
26052246 .. 26057227
4982 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23620.t1

Sequence Viewer

Length: 1353 bp
ATGGAAGGGGTGGTCATGCTGAGGCAGCTCATCGGTCAGCTTCAGGAGTTCGTACAACTCTACGGCTCTCCACCTCCTCAGCCTCTTCCGCAGCTTCCCTTACTCAACTACGCCAGGTGGTGCTCCTCCACTGTTGATGATAGCTCTATAGACGATTACTACAGTTTTATGATGGCAACTGGAAAATCTGCAAGTGTCCGGATATTAGACCCTTCCAAGCCTCCTCCTAGTAAGAGATCTCGTAAGGAGCGAACCCAGGGTAAATCATCAGGAACCACTGAGCCTATGGAACAACGTATTTGGAAAGATTTCCCAGAAGACCTATATGAAGCTGTCATTGCAAGGCTTCCAATTGCCACATTTTTCCATTTTCGCTCTGTTTGCAGGAAATGGAATTCCTTGCTGGACTCTGAAAGTTTCTCTCAGCATTGTACAGAGATCCCACAAGCTAATCCATGGTTTTACACCATCACCCATGAAAATGTGAATTCTGGGGCCATGTATGACCCTTCCTTGAAGAAGTGGCACCATCCGACGATTTCTTCTCTGCCAACAAAGCTGATCGTCTTGCCAGTGGCTTCAGCAGGGGGTCTTGTTTGCTTCCTTGATATTGGTAATAGAAACTTCTATGTGTGTAACCCTCTGAATCAATCTTTCAAAGAGCTGCCAGCCAGGTCAGTTAAGGTCTGGTCGCGTATTGCTGTGGGGATGACTCTGAATGGGAGTTCTACCAGTGGGGGCTACAAGGTAATGTGGGTGGGTTGTGATGGTGAGTATGAGGTTTATGACTCACTAAGGAACTCTTGGACTCGCCCTGGAAGCATGCCATCAAGTGTTAAGCTGCCATTATCCCTGAATTTCCGGTCGCAGGCTGTTACAATTGATAGCACACTTTACTTCATGCGGTCACGCCCTGATGGGATTGTGTCATATGATATGGTCACCGGGGTTTGGAAGCAGTTTATAATTCCCACACCACTGCATCTGACTGACCACACACTTGCTGAATGTGGAGGCCGGGTCATGCTGGTGGGTTTGTTGTCAAAGAATGCTGCTACATGCGTGTGCATTTGGGAGCTGCAGAAAATGACACTTTTGTGGAAGGAGGTTGACAGAATGCCAAATATATGGTGCTTGGAGTTTTACGGCAAGCACATTAGGATGACTTGCCTGGGTAACAAAGGCTTACTCATGTTGTCCTTGAGGTCGAGACAAATTAACCGCTTGGTTACTTACAATGTTTCGAGCAAGGAATGGCTCAAGGTTCCTGGTTGTGTGGTGCCCCATGGGAGGAAGCGGCAATGGATTGCATGTGGCACTTCATTTTATCCATGCTTGACTGCTGTGGCTTGA

Protein Analysis

451

Amino Acids

50.89

Weight (kDa)

9.15

Isoelectric Point (pI)

54.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 101 - 140 1.4e-07 F-box domain
FBA_1 PF07734 168 - 374 3.3e-08 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 185 - 368 1.2e-09 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 965
AccB1I GGYRCC 2 cut(s) 525, 1279
AccII CGCG 1 cut(s) 694
AccIII TCCGGA 1 cut(s) 198
AciI CCGC 4 cut(s) 89, 904, 1222, 1297
AclWI GGATC 1 cut(s) 433
AcsI RAATTY 3 cut(s) 394, 487, 856
AcuI CTGAAG 2 cut(s) 26, 564
AfaI GTAC 2 cut(s) 54, 433
AfiI CCNNNNNNNGG 3 cut(s) 868, 951, 1290
AgsI TTSAA 2 cut(s) 517, 658
AjnI CCWGG 6 cut(s) 113, 255, 671, 814, 1170, 1267
AleI CACNNNNGTG 1 cut(s) 1096
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 1 cut(s) 1204
AlwI GGATC 1 cut(s) 433
Aor13HI TCCGGA 1 cut(s) 198
AoxI GGCC 2 cut(s) 495, 1015
ApeKI GCWGC 6 cut(s) 25, 91, 664, 841, 1052, 1078
ApoI RAATTY 3 cut(s) 394, 487, 856
Asp700I GAANNNNTTC 1 cut(s) 308
AspS9I GGNCC 1 cut(s) 495
AsuC2I CCSGG 2 cut(s) 946, 1019
AsuHPI GGTGA 3 cut(s) 463, 782, 934
BaeGI GKGCMC 1 cut(s) 1284
BanI GGYRCC 2 cut(s) 525, 1279
BbsI GAAGAC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 125
BbvCI CCTCAGC 2 cut(s) 20, 78
BbvI GCAGC 6 cut(s) 37, 103, 651, 828, 1039, 1065
BccI CCATC 6 cut(s) 166, 476, 537, 761, 835, 911
BceAI ACGGC 2 cut(s) 79, 1162
BciT130I CCWGG 6 cut(s) 115, 257, 673, 816, 1172, 1269
BcnI CCSGG 2 cut(s) 946, 1019
BcoDI GTCTC 1 cut(s) 1204
BfaI CTAG 1 cut(s) 228
BfmI CTRYAG 3 cut(s) 147, 160, 1079
BglII AGATCT 1 cut(s) 236
BisI GCNGC 7 cut(s) 26, 92, 665, 842, 1053, 1079, 1298
BlsI GCNGC 7 cut(s) 27, 93, 666, 843, 1054, 1080, 1299
Bme1390I CCNGG 8 cut(s) 115, 257, 673, 816, 946, 1019, 1172, 1269
BmgT120I GGNCC 1 cut(s) 495
BmiI GGNNCC 5 cut(s) 274, 496, 527, 1266, 1281
BmrFI CCNGG 8 cut(s) 115, 257, 673, 816, 946, 1019, 1172, 1269
BmsI GCATC 1 cut(s) 991
BpiI GAAGAC 1 cut(s) 324
Bpu10I CCTNAGC 2 cut(s) 20, 78
BpuEI CTTGAG 2 cut(s) 1222, 1244
BpuMI CCSGG 2 cut(s) 946, 1019
BsaJI CCNNGG 7 cut(s) 255, 256, 455, 814, 945, 1171, 1285
BsaWI WCCGGW 2 cut(s) 198, 861
BsaXI ACNNNNNCTCC 2 cut(s) 1005, 1035
Bsc4I CCNNNNNNNGG 3 cut(s) 868, 951, 1290
Bse1I ACTGG 3 cut(s) 184, 572, 732
Bse3DI GCAATG 2 cut(s) 336, 1307
BseAI TCCGGA 1 cut(s) 198
BseBI CCWGG 6 cut(s) 115, 257, 673, 816, 1172, 1269
BseDI CCNNGG 7 cut(s) 255, 256, 455, 814, 945, 1171, 1285
BseGI GGATG 3 cut(s) 529, 714, 1167
BseLI CCNNNNNNNGG 3 cut(s) 868, 951, 1290
BseMI GCAATG 2 cut(s) 336, 1307
BseMII CTCAG 4 cut(s) 11, 92, 270, 437
BseNI ACTGG 3 cut(s) 184, 572, 732
BseRI GAGGAG 3 cut(s) 66, 115, 213
BseSI GKGCMC 1 cut(s) 1284
BseXI GCAGC 6 cut(s) 37, 103, 651, 828, 1039, 1065
Bsh1236I CGCG 1 cut(s) 694
Bsh1285I CGRYCG 1 cut(s) 866
BshFI GGCC 2 cut(s) 497, 1017
BshNI GGYRCC 2 cut(s) 525, 1279
BsiEI CGRYCG 1 cut(s) 866
BsiHKAI GWGCWC 1 cut(s) 125
BsiSI CCGG 4 cut(s) 199, 862, 945, 1018
BslI CCNNNNNNNGG 3 cut(s) 868, 951, 1290
BsmAI GTCTC 1 cut(s) 1204
BsmI GAATGC 2 cut(s) 1054, 1122
BsnI GGCC 2 cut(s) 497, 1017
Bsp1286I GDGCHC 2 cut(s) 125, 1284
Bsp13I TCCGGA 1 cut(s) 198
Bsp1407I TGTACA 1 cut(s) 431
Bsp143I GATC 3 cut(s) 236, 438, 561
Bsp19I CCATGG 2 cut(s) 455, 1285
BspACI CCGC 4 cut(s) 89, 904, 1222, 1297
BspANI GGCC 2 cut(s) 497, 1017
BspCNI CTCAG 4 cut(s) 12, 91, 271, 436
BspEI TCCGGA 1 cut(s) 198
BspFNI CGCG 1 cut(s) 694
BspLI GGNNCC 5 cut(s) 274, 496, 527, 1266, 1281
BspMAI CTGCAG 1 cut(s) 1083
BspPI GGATC 1 cut(s) 433
BspT107I GGYRCC 2 cut(s) 525, 1279
BsrDI GCAATG 2 cut(s) 336, 1307
BsrGI TGTACA 1 cut(s) 431
BsrI ACTGG 3 cut(s) 184, 572, 732
BssECI CCNNGG 7 cut(s) 255, 256, 455, 814, 945, 1171, 1285
BssMI GATC 3 cut(s) 236, 438, 561
BssT1I CCWWGG 2 cut(s) 455, 1285
Bst2UI CCWGG 6 cut(s) 115, 257, 673, 816, 1172, 1269
Bst4CI ACNGT 2 cut(s) 133, 164
Bst6I CTCTTC 1 cut(s) 90
BstAUI TGTACA 1 cut(s) 431
BstC8I GCNNGC 4 cut(s) 669, 824, 870, 1151
BstDEI CTNAG 5 cut(s) 20, 78, 279, 423, 794
BstDSI CCRYGG 2 cut(s) 455, 1285
BstEII GGTNACC 1 cut(s) 940
BstF5I GGATG 3 cut(s) 529, 714, 1167
BstFNI CGCG 1 cut(s) 694
BstKTI GATC 3 cut(s) 239, 441, 564
BstMAI GTCTC 1 cut(s) 1204
BstMBI GATC 3 cut(s) 236, 438, 561
BstMCI CGRYCG 1 cut(s) 866
BstMWI GCNNNNNNNGC 6 cut(s) 25, 88, 338, 381, 556, 819
BstNI CCWGG 6 cut(s) 115, 257, 673, 816, 1172, 1269
BstNSI RCATGY 3 cut(s) 826, 1062, 1314
BstPI GGTNACC 1 cut(s) 940
BstSCI CCNGG 8 cut(s) 113, 255, 671, 814, 944, 1017, 1170, 1267
BstSFI CTRYAG 3 cut(s) 147, 160, 1079
BstSLI GKGCMC 1 cut(s) 1284
BstUI CGCG 1 cut(s) 694
BstV1I GCAGC 6 cut(s) 37, 103, 651, 828, 1039, 1065
BstV2I GAAGAC 1 cut(s) 324
BstX2I RGATCY 2 cut(s) 236, 438
BstXI CCANNNNNNTGG 1 cut(s) 1128
BstYI RGATCY 2 cut(s) 236, 438
BsuRI GGCC 2 cut(s) 497, 1017
BtgI CCRYGG 2 cut(s) 455, 1285
BtsCI GGATG 3 cut(s) 529, 714, 1167
BtsI GCAGTG 1 cut(s) 977
BtsIMutI CAGTG 5 cut(s) 129, 276, 579, 739, 977
Cac8I GCNNGC 4 cut(s) 669, 824, 870, 1151
Cfr13I GGNCC 1 cut(s) 495
Csp6I GTAC 2 cut(s) 53, 432
CviQI GTAC 2 cut(s) 53, 432
DdeI CTNAG 5 cut(s) 20, 78, 279, 423, 794
DpnI GATC 3 cut(s) 238, 440, 563
DpnII GATC 3 cut(s) 236, 438, 561
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 2 cut(s) 455, 1285
Eco57I CTGAAG 2 cut(s) 26, 564
Eco91I GGTNACC 1 cut(s) 940
EcoO65I GGTNACC 1 cut(s) 940
EcoRI GAATTC 2 cut(s) 394, 487
EcoRII CCWGG 6 cut(s) 113, 255, 671, 814, 1170, 1267
EcoT14I CCWWGG 2 cut(s) 455, 1285
ErhI CCWWGG 2 cut(s) 455, 1285
FalI AAGNNNNNCTT 2 cut(s) 787, 819
FauNDI CATATG 1 cut(s) 931
Fnu4HI GCNGC 7 cut(s) 26, 92, 665, 842, 1053, 1079, 1298
FokI GGATG 3 cut(s) 516, 721, 1174
Fsp4HI GCNGC 7 cut(s) 26, 92, 665, 842, 1053, 1079, 1298
FspBI CTAG 1 cut(s) 228
GluI GCNGC 7 cut(s) 26, 92, 665, 842, 1053, 1079, 1298
HaeIII GGCC 2 cut(s) 497, 1017
HapII CCGG 4 cut(s) 199, 862, 945, 1018
HincII GTYRAC 1 cut(s) 1111
HindII GTYRAC 1 cut(s) 1111
HinfI GANTC 5 cut(s) 407, 646, 712, 788, 808
HpaII CCGG 4 cut(s) 199, 862, 945, 1018
HphI GGTGA 3 cut(s) 463, 782, 934
Hpy166II GTNNAC 1 cut(s) 1111
Hpy188I TCNGA 5 cut(s) 412, 534, 645, 717, 987
Hpy188III TCNNGA 4 cut(s) 44, 199, 270, 1209
Hpy8I GTNNAC 1 cut(s) 1111
Hpy99I CGWCG 1 cut(s) 538
HpyAV CCTTC 3 cut(s) 222, 519, 1096
HpyCH4III ACNGT 2 cut(s) 133, 164
HpyCH4IV ACGT 1 cut(s) 295
HpyCH4V TGCA 7 cut(s) 191, 341, 384, 982, 1068, 1081, 1310
HpyF10VI GCNNNNNNNGC 6 cut(s) 25, 88, 338, 381, 556, 819
HpyF3I CTNAG 5 cut(s) 20, 78, 279, 423, 794
HpySE526I ACGT 1 cut(s) 295
Kpn2I TCCGGA 1 cut(s) 198
Kzo9I GATC 3 cut(s) 236, 438, 561
LmnI GCTCC 3 cut(s) 128, 247, 1075
Lsp1109I GCAGC 6 cut(s) 37, 103, 651, 828, 1039, 1065
LweI GCATC 1 cut(s) 991
MaeI CTAG 1 cut(s) 228
MaeII ACGT 1 cut(s) 295
MaeIII GTNAC 6 cut(s) 635, 874, 906, 940, 1175, 1228
MalI GATC 3 cut(s) 238, 440, 563
MboI GATC 3 cut(s) 236, 438, 561
MboII GAAGA 4 cut(s) 77, 329, 529, 534
MfeI CAATTG 2 cut(s) 351, 879
MflI RGATCY 2 cut(s) 236, 438
MhlI GDGCHC 2 cut(s) 125, 1284
MluCI AATT 7 cut(s) 351, 394, 487, 856, 879, 966, 1215
MlyI GAGTC 4 cut(s) 401, 706, 782, 802
MmeI TCCRAC 1 cut(s) 557
MroI TCCGGA 1 cut(s) 198
MroXI GAANNNNTTC 1 cut(s) 308
MseI TTAA 3 cut(s) 681, 837, 1218
MslI CAYNNNNRTG 5 cut(s) 480, 1028, 1063, 1096, 1160
MspI CCGG 4 cut(s) 199, 862, 945, 1018
MspR9I CCNGG 8 cut(s) 115, 257, 673, 816, 946, 1019, 1172, 1269
MunI CAATTG 2 cut(s) 351, 879
Mva1269I GAATGC 2 cut(s) 1054, 1122
MvaI CCWGG 6 cut(s) 115, 257, 673, 816, 1172, 1269
MvnI CGCG 1 cut(s) 694
MwoI GCNNNNNNNGC 6 cut(s) 25, 88, 338, 381, 556, 819
NciI CCSGG 2 cut(s) 946, 1019
NcoI CCATGG 2 cut(s) 455, 1285
NdeI CATATG 1 cut(s) 931
NdeII GATC 3 cut(s) 236, 438, 561
NlaIV GGNNCC 5 cut(s) 274, 496, 527, 1266, 1281
NmuCI GTSAC 2 cut(s) 906, 940
NspI RCATGY 3 cut(s) 826, 1062, 1314
OliI CACNNNNGTG 1 cut(s) 1096
PaeI GCATGC 1 cut(s) 826
PasI CCCWGGG 1 cut(s) 256
PcsI WCGNNNNNNNCGW 1 cut(s) 247
PctI GAATGC 2 cut(s) 1054, 1122
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 1 cut(s) 646
PkrI GCNGC 7 cut(s) 27, 93, 666, 843, 1054, 1080, 1299
PleI GAGTC 4 cut(s) 401, 706, 782, 802
PpsI GAGTC 4 cut(s) 401, 706, 782, 802
PsiI TTATAA 1 cut(s) 965
Psp6I CCWGG 6 cut(s) 113, 255, 671, 814, 1170, 1267
PspEI GGTNACC 1 cut(s) 940
PspGI CCWGG 6 cut(s) 113, 255, 671, 814, 1170, 1267
PspN4I GGNNCC 5 cut(s) 274, 496, 527, 1266, 1281
PspPI GGNCC 1 cut(s) 495
PstI CTGCAG 1 cut(s) 1083
PsuI RGATCY 2 cut(s) 236, 438
RsaI GTAC 2 cut(s) 54, 433
RsaNI GTAC 2 cut(s) 53, 432
RseI CAYNNNNRTG 5 cut(s) 480, 1028, 1063, 1096, 1160
SaqAI TTAA 3 cut(s) 681, 837, 1218
SatI GCNGC 7 cut(s) 26, 92, 665, 842, 1053, 1079, 1298
Sau3AI GATC 3 cut(s) 236, 438, 561
Sau96I GGNCC 1 cut(s) 495
SchI GAGTC 4 cut(s) 401, 706, 782, 802
ScrFI CCNGG 8 cut(s) 115, 257, 673, 816, 946, 1019, 1172, 1269
SduI GDGCHC 2 cut(s) 125, 1284
SfaNI GCATC 1 cut(s) 991
SfcI CTRYAG 3 cut(s) 147, 160, 1079
SmiMI CAYNNNNRTG 5 cut(s) 480, 1028, 1063, 1096, 1160
SmlI CTYRAG 2 cut(s) 1201, 1259
SmoI CTYRAG 2 cut(s) 1201, 1259
SphI GCATGC 1 cut(s) 826
Sse9I AATT 7 cut(s) 351, 394, 487, 856, 879, 966, 1215
SsiI CCGC 4 cut(s) 89, 904, 1222, 1297
SspMI CTAG 1 cut(s) 228
StyD4I CCNGG 8 cut(s) 113, 255, 671, 814, 944, 1017, 1170, 1267
StyI CCWWGG 2 cut(s) 455, 1285
TaaI ACNGT 2 cut(s) 133, 164
TaiI ACGT 1 cut(s) 298
TaqI TCGA 2 cut(s) 1208, 1244
TaqII GACCGA 1 cut(s) 23
TasI AATT 7 cut(s) 351, 394, 487, 856, 879, 966, 1215
TatI WGTACW 1 cut(s) 431
TauI GCSGC 1 cut(s) 1300
TfiI GAWTC 1 cut(s) 646
Tru1I TTAA 3 cut(s) 681, 837, 1218
Tru9I TTAA 3 cut(s) 681, 837, 1218
TscAI CASTG 5 cut(s) 136, 283, 579, 739, 984
TseFI GTSAC 2 cut(s) 906, 940
TseI GCWGC 6 cut(s) 25, 91, 664, 841, 1052, 1078
Tsp45I GTSAC 2 cut(s) 906, 940
TspDTI ATGAA 4 cut(s) 342, 492, 889, 1311
TspRI CASTG 5 cut(s) 136, 283, 579, 739, 984
XapI RAATTY 3 cut(s) 394, 487, 856
XceI RCATGY 3 cut(s) 826, 1062, 1314
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
XmnI GAANNNNTTC 1 cut(s) 308
XspI CTAG 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.