Rorug04G0240000

F-box only protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Reverse (-)
40818729 .. 40820268
1540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0240000.1

Sequence Viewer

Length: 1044 bp
ATGGCCTTGTGGGGAGCTTTATCTCCTCACCTTCTACTCCTCGGCCTCATGTGCATCCTCCTCTACCCCAACGTTGGCATTCGCCTCGGCTCTGTCCGTCGTCCCTCCCCGGACGTCCCCGTCTTTCGGGAAGCCCCGGCCTTTCGGAACGGTGACCAATGCAGCTCGGGAAATAACACTGACGATATCCATGTGGCCATGACCCTCGACGCCAATTACATCCGGGGCACGATGGCTGCTGTCTTCTCTTTGTTGCAACATTCTACCTGCCCTGAAAACCTCAAGTTCCACTTTCTATCTGCCCATGTTGCGCCGGAGCTATTTTCGAGAATCAACTCCACGTTTCCTTACTTGGACTTCAAGACTTACCCCTTTGATTCAAACAGAGTTCGTGGGAAGATATCAAGGTCCATAAGACGAGCATTGGATCAACCTATAAATTATGCGAGAATTTACCTCGCTGATCTTCTTCCAAGTGATATTAGACGTGTTATTTACTTGGATTCAGACCTCGTTGTGGTCGACGACATTGCGAAGCTGTGGGGGGTGGACATGGAAGACAAGGTGGTGGCTGCCCCAGAATATTGTCAAGCAAATTTCACACAATACTTCACAGATGCATTATGGTCCGACCCGGATTTGTCAAAGACGTTCCGAGGAAGAAACCCATGTTATTTCAACACAGGAGTGATGGTGGTGGATGTGGATAAATGGAGAAAAGGAGGGTATACACAGAAAGTAGAGGAGTGGATGGCCCTGCAAAAGAGAAAGAGGCTATACCATTTGGGGTCTTTGCCGCCATTTTTGCTGGTTTTGGCTGGGAACATCAAGGCTGTGGATCACAGGTGGAACCAACATGGGCTTGGTGGTGACAACTTTGAAGGAAAGTGTAGGCGCCTCCACCCAGGTCCCATTAGTCTTCTTCATTGGAGCGGAAAGGGTAAGCCATGGTTGCGGTTGGATTCTAGGAGAACATGTACTGTCGATCATCTTTGGGCGCCATACGATCTCTACCAGTCTTCGAGAAGCTTTCTGGAAGAATAG

Protein Analysis

347

Amino Acids

39.65

Weight (kDa)

8.87

Isoelectric Point (pI)

46.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_8 PF01501 64 - 319 8e-59 Glycosyl transferase family 8
Glyco_transf_24 PF18404 78 - 242 3.5e-09 Glucosyltransferase 24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 119
AatII GACGTC 1 cut(s) 117
Acc36I ACCTGC 1 cut(s) 275
AccB1I GGYRCC 2 cut(s) 894, 997
AccBSI CCGCTC 1 cut(s) 933
AccI GTMKAC 2 cut(s) 522, 728
AciI CCGC 3 cut(s) 797, 933, 955
AclI AACGTT 1 cut(s) 72
AclWI GGATC 2 cut(s) 435, 846
AcoI YGGCCR 1 cut(s) 195
AcsI RAATTY 2 cut(s) 450, 595
AcyI GRCGYC 4 cut(s) 114, 210, 895, 998
AfaI GTAC 1 cut(s) 979
AfiI CCNNNNNNNGG 3 cut(s) 74, 126, 517
AflIII ACRYGT 2 cut(s) 487, 974
AgsI TTSAA 4 cut(s) 361, 381, 679, 881
AjiI CACGTC 1 cut(s) 488
AjnI CCWGG 1 cut(s) 904
AleI CACNNNNGTG 1 cut(s) 686
AluBI AGCT 5 cut(s) 17, 165, 319, 538, 1029
AluI AGCT 5 cut(s) 17, 165, 319, 538, 1029
AlwI GGATC 2 cut(s) 435, 846
Ama87I CYCGRG 1 cut(s) 166
AoxI GGCC 5 cut(s) 3, 43, 138, 195, 753
ApeKI GCWGC 3 cut(s) 162, 236, 572
ApoI RAATTY 2 cut(s) 450, 595
AspLEI GCGC 3 cut(s) 313, 897, 1000
AspS9I GGNCC 4 cut(s) 408, 627, 754, 908
AsuC2I CCSGG 4 cut(s) 110, 137, 224, 635
AsuHPI GGTGA 3 cut(s) 20, 164, 881
AvaI CYCGRG 1 cut(s) 166
AvaII GGWCC 3 cut(s) 408, 627, 908
BaeGI GKGCMC 1 cut(s) 230
BalI TGGCCA 1 cut(s) 197
BanI GGYRCC 2 cut(s) 894, 997
BbsI GAAGAC 4 cut(s) 235, 564, 911, 1011
BbvI GCAGC 3 cut(s) 174, 223, 559
BccI CCATC 3 cut(s) 226, 685, 745
BcgI CGANNNNNNTGC 4 cut(s) 67, 101, 512, 546
BciT130I CCWGG 1 cut(s) 906
BcnI CCSGG 4 cut(s) 110, 137, 224, 635
BfaI CTAG 1 cut(s) 966
BfoI RGCGCY 2 cut(s) 898, 1001
BfuAI ACCTGC 1 cut(s) 275
BisI GCNGC 4 cut(s) 163, 237, 573, 797
BlsI GCNGC 4 cut(s) 164, 238, 574, 798
Bme1390I CCNGG 5 cut(s) 110, 137, 224, 635, 906
Bme18I GGWCC 3 cut(s) 408, 627, 908
BmeT110I CYCGRG 1 cut(s) 166
BmgBI CACGTC 1 cut(s) 488
BmgT120I GGNCC 4 cut(s) 408, 627, 754, 908
BmiI GGNNCC 4 cut(s) 851, 896, 910, 999
BmrFI CCNGG 5 cut(s) 110, 137, 224, 635, 906
BmsI GCATC 2 cut(s) 63, 607
BpiI GAAGAC 4 cut(s) 235, 564, 911, 1011
BpuEI CTTGAG 1 cut(s) 266
BpuMI CCSGG 4 cut(s) 110, 137, 224, 635
BsaHI GRCGYC 4 cut(s) 114, 210, 895, 998
BsaJI CCNNGG 8 cut(s) 40, 85, 108, 135, 223, 655, 904, 947
BsaXI ACNNNNNCTCC 4 cut(s) 678, 708, 961, 991
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 126, 517
Bse1I ACTGG 1 cut(s) 1015
Bse3DI GCAATG 1 cut(s) 528
BseBI CCWGG 1 cut(s) 906
BseDI CCNNGG 8 cut(s) 40, 85, 108, 135, 223, 655, 904, 947
BseGI GGATG 4 cut(s) 54, 219, 706, 756
BseLI CCNNNNNNNGG 3 cut(s) 74, 126, 517
BseMI GCAATG 1 cut(s) 528
BseNI ACTGG 1 cut(s) 1015
BseRI GAGGAG 4 cut(s) 15, 29, 50, 758
BseSI GKGCMC 1 cut(s) 230
BseXI GCAGC 3 cut(s) 174, 223, 559
BseYI CCCAGC 1 cut(s) 818
BshFI GGCC 5 cut(s) 5, 45, 140, 197, 755
BshNI GGYRCC 2 cut(s) 894, 997
BsiHKCI CYCGRG 1 cut(s) 166
BsiSI CCGG 5 cut(s) 110, 137, 223, 314, 635
BslFI GGGAC 3 cut(s) 87, 101, 894
BslI CCNNNNNNNGG 3 cut(s) 74, 126, 517
BsmFI GGGAC 3 cut(s) 87, 101, 894
BsmI GAATGC 1 cut(s) 78
BsnI GGCC 5 cut(s) 5, 45, 140, 197, 755
BsoBI CYCGRG 1 cut(s) 166
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 5 cut(s) 427, 463, 838, 985, 1006
Bsp19I CCATGG 1 cut(s) 947
BspACI CCGC 3 cut(s) 797, 933, 955
BspANI GGCC 5 cut(s) 5, 45, 140, 197, 755
BspLI GGNNCC 4 cut(s) 851, 896, 910, 999
BspMI ACCTGC 1 cut(s) 275
BspPI GGATC 2 cut(s) 435, 846
BspT107I GGYRCC 2 cut(s) 894, 997
BsrBI CCGCTC 1 cut(s) 933
BsrDI GCAATG 1 cut(s) 528
BsrI ACTGG 1 cut(s) 1015
BssECI CCNNGG 8 cut(s) 40, 85, 108, 135, 223, 655, 904, 947
BssMI GATC 5 cut(s) 427, 463, 838, 985, 1006
BssNAI GTATAC 1 cut(s) 729
BssNI GRCGYC 4 cut(s) 114, 210, 895, 998
BssT1I CCWWGG 1 cut(s) 947
Bst1107I GTATAC 1 cut(s) 729
Bst2UI CCWGG 1 cut(s) 906
Bst4CI ACNGT 2 cut(s) 152, 982
BstACI GRCGYC 4 cut(s) 114, 210, 895, 998
BstDSI CCRYGG 1 cut(s) 947
BstEII GGTNACC 1 cut(s) 152
BstF5I GGATG 4 cut(s) 54, 219, 706, 756
BstH2I RGCGCY 2 cut(s) 898, 1001
BstHHI GCGC 3 cut(s) 313, 897, 1000
BstKTI GATC 5 cut(s) 430, 466, 841, 988, 1009
BstMBI GATC 5 cut(s) 427, 463, 838, 985, 1006
BstMWI GCNNNNNNNGC 4 cut(s) 51, 308, 805, 952
BstNI CCWGG 1 cut(s) 906
BstNSI RCATGY 1 cut(s) 978
BstPI GGTNACC 1 cut(s) 152
BstSCI CCNGG 5 cut(s) 108, 135, 222, 633, 904
BstSLI GKGCMC 1 cut(s) 230
BstV1I GCAGC 3 cut(s) 174, 223, 559
BstV2I GAAGAC 4 cut(s) 235, 564, 911, 1011
BstZ17I GTATAC 1 cut(s) 729
BsuRI GGCC 5 cut(s) 5, 45, 140, 197, 755
BtgI CCRYGG 1 cut(s) 947
BtrI CACGTC 1 cut(s) 488
BtsCI GGATG 4 cut(s) 54, 219, 706, 756
BtsIMutI CAGTG 1 cut(s) 177
BveI ACCTGC 1 cut(s) 275
CfoI GCGC 3 cut(s) 313, 897, 1000
Cfr13I GGNCC 4 cut(s) 408, 627, 754, 908
CseI GACGC 1 cut(s) 218
Csp6I GTAC 1 cut(s) 978
CviAII CATG 9 cut(s) 49, 191, 199, 305, 553, 669, 857, 948, 975
CviQI GTAC 1 cut(s) 978
DinI GGCGCC 2 cut(s) 896, 999
DpnI GATC 5 cut(s) 429, 465, 840, 987, 1008
DpnII GATC 5 cut(s) 427, 463, 838, 985, 1006
DrdI GACNNNNNNGTC 1 cut(s) 119
DseDI GACNNNNNNGTC 1 cut(s) 119
EaeI YGGCCR 1 cut(s) 195
Eco130I CCWWGG 1 cut(s) 947
Eco32I GATATC 2 cut(s) 187, 402
Eco47I GGWCC 3 cut(s) 408, 627, 908
Eco88I CYCGRG 1 cut(s) 166
Eco91I GGTNACC 1 cut(s) 152
EcoO109I RGGNCCY 1 cut(s) 908
EcoO65I GGTNACC 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 904
EcoRV GATATC 2 cut(s) 187, 402
EcoT14I CCWWGG 1 cut(s) 947
EcoT22I ATGCAT 1 cut(s) 622
EgeI GGCGCC 2 cut(s) 896, 999
EheI GGCGCC 2 cut(s) 896, 999
ErhI CCWWGG 1 cut(s) 947
FaeI CATG 9 cut(s) 52, 194, 202, 308, 556, 672, 860, 951, 978
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FaqI GGGAC 3 cut(s) 87, 101, 894
FatI CATG 9 cut(s) 48, 190, 198, 304, 552, 668, 856, 947, 974
FblI GTMKAC 2 cut(s) 522, 728
Fnu4HI GCNGC 4 cut(s) 163, 237, 573, 797
FokI GGATG 4 cut(s) 41, 206, 713, 763
Fsp4HI GCNGC 4 cut(s) 163, 237, 573, 797
FspBI CTAG 1 cut(s) 966
GlaI GCGC 3 cut(s) 312, 896, 999
GluI GCNGC 4 cut(s) 163, 237, 573, 797
GsaI CCCAGC 1 cut(s) 822
HaeII RGCGCY 2 cut(s) 898, 1001
HaeIII GGCC 5 cut(s) 5, 45, 140, 197, 755
HapII CCGG 5 cut(s) 110, 137, 223, 314, 635
HgaI GACGC 1 cut(s) 218
HhaI GCGC 3 cut(s) 313, 897, 1000
Hin1I GRCGYC 4 cut(s) 114, 210, 895, 998
Hin1II CATG 9 cut(s) 52, 194, 202, 308, 556, 672, 860, 951, 978
Hin6I GCGC 3 cut(s) 311, 895, 998
HinP1I GCGC 3 cut(s) 311, 895, 998
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HindIII AAGCTT 1 cut(s) 1027
HinfI GANTC 4 cut(s) 330, 377, 503, 962
HpaII CCGG 5 cut(s) 110, 137, 223, 314, 635
HphI GGTGA 3 cut(s) 20, 164, 881
Hpy166II GTNNAC 3 cut(s) 523, 550, 729
Hpy188I TCNGA 4 cut(s) 147, 508, 631, 656
Hpy188III TCNNGA 6 cut(s) 128, 168, 327, 361, 1023, 1034
Hpy8I GTNNAC 3 cut(s) 523, 550, 729
Hpy99I CGWCG 3 cut(s) 102, 212, 527
HpyAV CCTTC 2 cut(s) 41, 875
HpyCH4III ACNGT 2 cut(s) 152, 982
HpyCH4IV ACGT 5 cut(s) 72, 114, 341, 487, 650
HpyCH4V TGCA 5 cut(s) 54, 162, 256, 620, 760
HpyF10VI GCNNNNNNNGC 4 cut(s) 51, 308, 805, 952
HpySE526I ACGT 5 cut(s) 72, 114, 341, 487, 650
Hsp92I GRCGYC 4 cut(s) 114, 210, 895, 998
Hsp92II CATG 9 cut(s) 52, 194, 202, 308, 556, 672, 860, 951, 978
HspAI GCGC 3 cut(s) 311, 895, 998
KasI GGCGCC 2 cut(s) 894, 997
Kzo9I GATC 5 cut(s) 427, 463, 838, 985, 1006
LmnI GCTCC 3 cut(s) 14, 316, 930
Lsp1109I GCAGC 3 cut(s) 174, 223, 559
LweI GCATC 2 cut(s) 63, 607
MaeI CTAG 1 cut(s) 966
MaeII ACGT 5 cut(s) 72, 114, 341, 487, 650
MaeIII GTNAC 2 cut(s) 152, 869
MalI GATC 5 cut(s) 429, 465, 840, 987, 1008
MbiI CCGCTC 1 cut(s) 933
MboI GATC 5 cut(s) 427, 463, 838, 985, 1006
MboII GAAGA 9 cut(s) 235, 409, 458, 461, 569, 672, 911, 914, 1011
MhlI GDGCHC 1 cut(s) 230
MlsI TGGCCA 1 cut(s) 197
MluCI AATT 4 cut(s) 214, 439, 450, 595
MluNI TGGCCA 1 cut(s) 197
Mly113I GGCGCC 2 cut(s) 895, 998
MmeI TCCRAC 2 cut(s) 654, 939
Mox20I TGGCCA 1 cut(s) 197
Mph1103I ATGCAT 1 cut(s) 622
MscI TGGCCA 1 cut(s) 197
MslI CAYNNNNRTG 1 cut(s) 686
Msp20I TGGCCA 1 cut(s) 197
MspI CCGG 5 cut(s) 110, 137, 223, 314, 635
MspR9I CCNGG 5 cut(s) 110, 137, 224, 635, 906
Mva1269I GAATGC 1 cut(s) 78
MvaI CCWGG 1 cut(s) 906
MwoI GCNNNNNNNGC 4 cut(s) 51, 308, 805, 952
NarI GGCGCC 2 cut(s) 895, 998
NciI CCSGG 4 cut(s) 110, 137, 224, 635
NcoI CCATGG 1 cut(s) 947
NdeII GATC 5 cut(s) 427, 463, 838, 985, 1006
NlaIII CATG 9 cut(s) 52, 194, 202, 308, 556, 672, 860, 951, 978
NlaIV GGNNCC 4 cut(s) 851, 896, 910, 999
NmeAIII GCCGAG 2 cut(s) 21, 66
NmuCI GTSAC 2 cut(s) 152, 869
NsiI ATGCAT 1 cut(s) 622
NspI RCATGY 1 cut(s) 978
OliI CACNNNNGTG 1 cut(s) 686
PciI ACATGT 1 cut(s) 974
PcsI WCGNNNNNNNCGW 1 cut(s) 519
PctI GAATGC 1 cut(s) 78
PfeI GAWTC 4 cut(s) 330, 377, 503, 962
PkrI GCNGC 4 cut(s) 164, 238, 574, 798
PluTI GGCGCC 2 cut(s) 898, 1001
PpuMI RGGWCCY 1 cut(s) 908
PscI ACATGT 1 cut(s) 974
Psp1406I AACGTT 1 cut(s) 72
Psp5II RGGWCCY 1 cut(s) 908
Psp6I CCWGG 1 cut(s) 904
PspEI GGTNACC 1 cut(s) 152
PspFI CCCAGC 1 cut(s) 818
PspGI CCWGG 1 cut(s) 904
PspN4I GGNNCC 4 cut(s) 851, 896, 910, 999
PspPI GGNCC 4 cut(s) 408, 627, 754, 908
PspPPI RGGWCCY 1 cut(s) 908
RsaI GTAC 1 cut(s) 979
RsaNI GTAC 1 cut(s) 978
RseI CAYNNNNRTG 1 cut(s) 686
SalI GTCGAC 1 cut(s) 521
SatI GCNGC 4 cut(s) 163, 237, 573, 797
Sau3AI GATC 5 cut(s) 427, 463, 838, 985, 1006
Sau96I GGNCC 4 cut(s) 408, 627, 754, 908
ScrFI CCNGG 5 cut(s) 110, 137, 224, 635, 906
SduI GDGCHC 1 cut(s) 230
SfaNI GCATC 2 cut(s) 63, 607
SfoI GGCGCC 2 cut(s) 896, 999
SinI GGWCC 3 cut(s) 408, 627, 908
SmiMI CAYNNNNRTG 1 cut(s) 686
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 4 cut(s) 214, 439, 450, 595
SsiI CCGC 3 cut(s) 797, 933, 955
SspDI GGCGCC 2 cut(s) 894, 997
SspI AATATT 1 cut(s) 584
SspMI CTAG 1 cut(s) 966
StyD4I CCNGG 5 cut(s) 108, 135, 222, 633, 904
StyI CCWWGG 1 cut(s) 947
TaaI ACNGT 2 cut(s) 152, 982
TaiI ACGT 5 cut(s) 75, 117, 344, 490, 653
TaqI TCGA 5 cut(s) 207, 326, 522, 984, 1022
TasI AATT 4 cut(s) 214, 439, 450, 595
TatI WGTACW 1 cut(s) 977
TauI GCSGC 1 cut(s) 799
TfiI GAWTC 4 cut(s) 330, 377, 503, 962
TscAI CASTG 1 cut(s) 184
TseFI GTSAC 2 cut(s) 152, 869
TseI GCWGC 3 cut(s) 162, 236, 572
Tsp45I GTSAC 2 cut(s) 152, 869
TspDTI ATGAA 1 cut(s) 914
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 3 cut(s) 408, 627, 908
XapI RAATTY 2 cut(s) 450, 595
XceI RCATGY 1 cut(s) 978
XcmI CCANNNNNNNNNTGG 1 cut(s) 860
XmiI GTMKAC 2 cut(s) 522, 728
XspI CTAG 1 cut(s) 966
ZraI GACGTC 1 cut(s) 115
Zsp2I ATGCAT 1 cut(s) 622
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.