Rh4BG303500

F-box only protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
47397407 .. 47401008
3602 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG303500.1

Sequence Viewer

Length: 1194 bp
ATGATGGCAGCTGGAAAATCTGGAAGTGTCAAGATGCTAGAACCTTCCAAGCCTCCTCCTAGTAAGAGATCTCGTAAGGAGCGAGCCCGGGGTAAATCATCAGGAACGACAAATACCACTGAGCCTATGGAACAACATATTTGGAAAGATTTCCCGGAAGACCTTTATGAAGCTGTCATTGCAAGGCTTCCAATTGCCACATTTTTCCGTTTTCGTTCTGTTTGCAGGAAATGGAATTCATTGCTGGACTCTGAAAGTTTCTCTCAGCAGTGTGCAGAGATCCCACAAGCTAATCCATGGTTTTACACCATCACTCATGAAAACGTGAATTCTGGGGCCATGTATGACCCTTCCTTGAAGAAGTGGCACCATCCCACGATTTCTTCTCTGCCAACAAAGCTGATCGTCTTGCCAGTGGCTTCAGCAGGTGGCCTGGTTTGCTTTCTTGATATTGGTAATAGAAACTTCTACATGTGTAACCCTCTGAATCAATCTTTTAAAGAGTTGCCAGCCAGGTCAGTTAAGGTCTGGTCTCGTATTGCTGTGGGGATGACTCTGAATGGGAGTTCTACCAGTGGGGGCTACAAGATCATGTGGGTGGGTTGTGATGGTGAGTATGAAGTTTATGACTCACTAAGGAACTCTTGGACTAGCCCTGGAAGCATGCCATCAAGTGTTAAGCTTCCACTATCCCTGAATTTCCGATCGCAGGCTGTTACAATTGATAGCACACTTTACTACATGCGGTCAGACCCTGAAGGAATTGTGTCATATGATATGGTCACTGGGGTTTGGAAGCAGTTTATAATTCCCACACCGCTGCATCTGACTGATCACACACTTGCTGAATGTGGAGGCCGGATCATGCTGGTGGGATTGTTGTCAAAGAATGCTGCTACGTGCGTATGCATTTGGGAGCTGCAGAAAATGACACTTTTGTGGAAGGAGGTTGACAGAATGCCAAATATATGGTGCTTGGAGTTTTACGGCAAGCACGTTAGGATGACTTGCCTGGGTAACAAAGGCTTACTCATGTTGTCCTTGAGGTCGAGACAAATGAACCGCTTGGTTACTTACAATGTTTCGAGCAGGGAATGGCTTAAGGTTCCTGGTTGCGTGGTGCCACATGGGAGGAAGCGGCAATGGATTGCATGTGGCACTTCATTTCATCCATGCCTGACTGCTGTGGCTTGA

Protein Analysis

397

Amino Acids

44.72

Weight (kDa)

9.33

Isoelectric Point (pI)

52.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 48 - 87 4.4e-08 F-box domain
FBA_1 PF07734 115 - 322 1.4e-07 F-box associated beta propeller domain
b-prop_At3g26010-like PF24750 132 - 316 3.2e-08 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 806
AarI CACCTGC 1 cut(s) 416
Acc36I ACCTGC 1 cut(s) 416
AccB1I GGYRCC 2 cut(s) 366, 1120
AciI CCGC 4 cut(s) 745, 818, 1063, 1138
AclWI GGATC 2 cut(s) 274, 869
AcsI RAATTY 3 cut(s) 235, 328, 697
AcuI CTGAAG 2 cut(s) 405, 777
AfiI CCNNNNNNNGG 1 cut(s) 709
AflII CTTAAG 1 cut(s) 1100
AflIII ACRYGT 1 cut(s) 471
AgsI TTSAA 1 cut(s) 358
AjnI CCWGG 5 cut(s) 432, 512, 655, 1011, 1108
AleI CACNNNNGTG 1 cut(s) 937
AluBI AGCT 6 cut(s) 11, 173, 290, 400, 682, 919
AluI AGCT 6 cut(s) 11, 173, 290, 400, 682, 919
Alw26I GTCTC 2 cut(s) 537, 1045
AlwI GGATC 2 cut(s) 274, 869
AlwNI CAGNNNCTG 1 cut(s) 755
Ama87I CYCGRG 1 cut(s) 87
AoxI GGCC 3 cut(s) 336, 430, 856
ApeKI GCWGC 4 cut(s) 8, 820, 893, 919
ApoI RAATTY 3 cut(s) 235, 328, 697
Asp700I GAANNNNTTC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 336
AsuC2I CCSGG 3 cut(s) 88, 89, 155
AsuHPI GGTGA 1 cut(s) 623
AvaI CYCGRG 1 cut(s) 87
BanI GGYRCC 2 cut(s) 366, 1120
BanII GRGCYC 1 cut(s) 88
BbsI GAAGAC 1 cut(s) 165
BbvI GCAGC 4 cut(s) 20, 807, 880, 906
BccI CCATC 4 cut(s) 317, 378, 602, 676
BceAI ACGGC 1 cut(s) 1003
BciT130I CCWGG 5 cut(s) 434, 514, 657, 1013, 1110
BclI TGATCA 1 cut(s) 832
BcnI CCSGG 3 cut(s) 88, 89, 155
BcoDI GTCTC 2 cut(s) 537, 1045
BfaI CTAG 3 cut(s) 38, 60, 651
BfmI CTRYAG 1 cut(s) 920
BfrI CTTAAG 1 cut(s) 1100
BfuAI ACCTGC 1 cut(s) 416
BglII AGATCT 1 cut(s) 68
BisI GCNGC 5 cut(s) 9, 821, 894, 920, 1139
BlsI GCNGC 5 cut(s) 10, 822, 895, 921, 1140
Bme1390I CCNGG 8 cut(s) 88, 89, 155, 434, 514, 657, 1013, 1110
BmeT110I CYCGRG 1 cut(s) 87
BmgT120I GGNCC 1 cut(s) 336
BmiI GGNNCC 4 cut(s) 337, 368, 1107, 1122
BmrFI CCNGG 8 cut(s) 88, 89, 155, 434, 514, 657, 1013, 1110
BmrI ACTGGG 1 cut(s) 795
BmsI GCATC 2 cut(s) 24, 832
BmuI ACTGGG 1 cut(s) 795
BpiI GAAGAC 1 cut(s) 165
BpuEI CTTGAG 1 cut(s) 1063
BpuMI CCSGG 3 cut(s) 88, 89, 155
BsaAI YACGTR 1 cut(s) 900
BsaI GGTCTC 1 cut(s) 537
BsaJI CCNNGG 5 cut(s) 87, 88, 296, 655, 1012
Bsc4I CCNNNNNNNGG 1 cut(s) 709
Bse1I ACTGG 3 cut(s) 413, 573, 790
Bse3DI GCAATG 3 cut(s) 177, 239, 1148
BseBI CCWGG 5 cut(s) 434, 514, 657, 1013, 1110
BseDI CCNNGG 5 cut(s) 87, 88, 296, 655, 1012
BseGI GGATG 4 cut(s) 370, 555, 1008, 1168
BseLI CCNNNNNNNGG 1 cut(s) 709
BseMI GCAATG 3 cut(s) 177, 239, 1148
BseMII CTCAG 2 cut(s) 111, 278
BseNI ACTGG 3 cut(s) 413, 573, 790
BseRI GAGGAG 1 cut(s) 45
BseXI GCAGC 4 cut(s) 20, 807, 880, 906
BsgI GTGCAG 1 cut(s) 294
Bsh1285I CGRYCG 1 cut(s) 707
BshFI GGCC 3 cut(s) 338, 432, 858
BshNI GGYRCC 2 cut(s) 366, 1120
BsiEI CGRYCG 1 cut(s) 707
BsiHKCI CYCGRG 1 cut(s) 87
BsiSI CCGG 3 cut(s) 88, 155, 859
BslI CCNNNNNNNGG 1 cut(s) 709
BsmAI GTCTC 2 cut(s) 537, 1045
BsmI GAATGC 2 cut(s) 895, 963
BsnI GGCC 3 cut(s) 338, 432, 858
Bso31I GGTCTC 1 cut(s) 537
BsoBI CYCGRG 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 88
Bsp143I GATC 7 cut(s) 68, 279, 402, 588, 704, 832, 861
Bsp19I CCATGG 1 cut(s) 296
BspACI CCGC 4 cut(s) 745, 818, 1063, 1138
BspANI GGCC 3 cut(s) 338, 432, 858
BspCNI CTCAG 2 cut(s) 112, 277
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 4 cut(s) 337, 368, 1107, 1122
BspMAI CTGCAG 1 cut(s) 924
BspMI ACCTGC 1 cut(s) 416
BspPI GGATC 2 cut(s) 274, 869
BspT107I GGYRCC 2 cut(s) 366, 1120
BspTI CTTAAG 1 cut(s) 1100
BspTNI GGTCTC 1 cut(s) 537
BsrDI GCAATG 3 cut(s) 177, 239, 1148
BsrI ACTGG 3 cut(s) 413, 573, 790
BssECI CCNNGG 5 cut(s) 87, 88, 296, 655, 1012
BssMI GATC 7 cut(s) 68, 279, 402, 588, 704, 832, 861
BssT1I CCWWGG 1 cut(s) 296
Bst2UI CCWGG 5 cut(s) 434, 514, 657, 1013, 1110
BstAFI CTTAAG 1 cut(s) 1100
BstBAI YACGTR 1 cut(s) 900
BstC8I GCNNGC 5 cut(s) 84, 510, 665, 711, 992
BstDEI CTNAG 3 cut(s) 120, 264, 635
BstDSI CCRYGG 1 cut(s) 296
BstF5I GGATG 4 cut(s) 370, 555, 1008, 1168
BstKTI GATC 7 cut(s) 71, 282, 405, 591, 707, 835, 864
BstMAI GTCTC 2 cut(s) 537, 1045
BstMBI GATC 7 cut(s) 68, 279, 402, 588, 704, 832, 861
BstMCI CGRYCG 1 cut(s) 707
BstMWI GCNNNNNNNGC 4 cut(s) 179, 397, 438, 660
BstNI CCWGG 5 cut(s) 434, 514, 657, 1013, 1110
BstNSI RCATGY 4 cut(s) 475, 667, 745, 1155
BstSCI CCNGG 8 cut(s) 86, 87, 153, 432, 512, 655, 1011, 1108
BstSFI CTRYAG 1 cut(s) 920
BstV1I GCAGC 4 cut(s) 20, 807, 880, 906
BstV2I GAAGAC 1 cut(s) 165
BstX2I RGATCY 2 cut(s) 68, 279
BstXI CCANNNNNNTGG 1 cut(s) 969
BstYI RGATCY 2 cut(s) 68, 279
BsuRI GGCC 3 cut(s) 338, 432, 858
BtgI CCRYGG 1 cut(s) 296
BtsCI GGATG 4 cut(s) 370, 555, 1008, 1168
BtsI GCAGTG 1 cut(s) 275
BtsIMutI CAGTG 5 cut(s) 117, 275, 420, 580, 783
BveI ACCTGC 1 cut(s) 416
Cac8I GCNNGC 5 cut(s) 84, 510, 665, 711, 992
CaiI CAGNNNCTG 1 cut(s) 755
CciI TCATGA 1 cut(s) 316
Cfr13I GGNCC 1 cut(s) 336
Cfr9I CCCGGG 1 cut(s) 87
DdeI CTNAG 3 cut(s) 120, 264, 635
DpnI GATC 7 cut(s) 70, 281, 404, 590, 706, 834, 863
DpnII GATC 7 cut(s) 68, 279, 402, 588, 704, 832, 861
DraI TTTAAA 1 cut(s) 499
Eco130I CCWWGG 1 cut(s) 296
Eco24I GRGCYC 1 cut(s) 88
Eco31I GGTCTC 1 cut(s) 537
Eco57I CTGAAG 2 cut(s) 405, 777
Eco88I CYCGRG 1 cut(s) 87
EcoRI GAATTC 2 cut(s) 235, 328
EcoRII CCWGG 5 cut(s) 432, 512, 655, 1011, 1108
EcoT14I CCWWGG 1 cut(s) 296
EcoT22I ATGCAT 1 cut(s) 911
EcoT38I GRGCYC 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 296
FalI AAGNNNNNCTT 2 cut(s) 628, 660
FauNDI CATATG 1 cut(s) 772
FbaI TGATCA 1 cut(s) 832
Fnu4HI GCNGC 5 cut(s) 9, 821, 894, 920, 1139
FokI GGATG 4 cut(s) 357, 562, 1015, 1155
FriOI GRGCYC 1 cut(s) 88
Fsp4HI GCNGC 5 cut(s) 9, 821, 894, 920, 1139
FspBI CTAG 3 cut(s) 38, 60, 651
GluI GCNGC 5 cut(s) 9, 821, 894, 920, 1139
HaeIII GGCC 3 cut(s) 338, 432, 858
HapII CCGG 3 cut(s) 88, 155, 859
HincII GTYRAC 1 cut(s) 952
HindII GTYRAC 1 cut(s) 952
HindIII AAGCTT 1 cut(s) 680
HinfI GANTC 4 cut(s) 248, 487, 553, 629
HpaII CCGG 3 cut(s) 88, 155, 859
HphI GGTGA 1 cut(s) 623
Hpy166II GTNNAC 1 cut(s) 952
Hpy188I TCNGA 6 cut(s) 253, 486, 558, 704, 751, 828
Hpy188III TCNNGA 6 cut(s) 21, 31, 102, 317, 446, 1050
Hpy8I GTNNAC 1 cut(s) 952
HpyAV CCTTC 4 cut(s) 54, 360, 752, 937
HpyCH4IV ACGT 3 cut(s) 324, 899, 996
HpyCH4V TGCA 7 cut(s) 182, 225, 275, 823, 909, 922, 1151
HpyF10VI GCNNNNNNNGC 4 cut(s) 179, 397, 438, 660
HpyF3I CTNAG 3 cut(s) 120, 264, 635
HpySE526I ACGT 3 cut(s) 324, 899, 996
Ksp22I TGATCA 1 cut(s) 832
Kzo9I GATC 7 cut(s) 68, 279, 402, 588, 704, 832, 861
LmnI GCTCC 2 cut(s) 79, 916
Lsp1109I GCAGC 4 cut(s) 20, 807, 880, 906
LweI GCATC 2 cut(s) 24, 832
MaeI CTAG 3 cut(s) 38, 60, 651
MaeII ACGT 3 cut(s) 324, 899, 996
MaeIII GTNAC 5 cut(s) 476, 715, 781, 1016, 1069
MalI GATC 7 cut(s) 70, 281, 404, 590, 706, 834, 863
MboI GATC 7 cut(s) 68, 279, 402, 588, 704, 832, 861
MboII GAAGA 3 cut(s) 170, 370, 375
MfeI CAATTG 2 cut(s) 192, 720
MflI RGATCY 2 cut(s) 68, 279
MhlI GDGCHC 1 cut(s) 88
MluCI AATT 7 cut(s) 192, 235, 328, 697, 720, 762, 807
MlyI GAGTC 3 cut(s) 242, 547, 623
MnlI CCTC 7 cut(s) 63, 66, 492, 848, 940, 1038, 1125
Mph1103I ATGCAT 1 cut(s) 911
MroXI GAANNNNTTC 1 cut(s) 149
MseI TTAA 4 cut(s) 498, 522, 678, 1101
MslI CAYNNNNRTG 3 cut(s) 596, 869, 937
MspA1I CMGCKG 2 cut(s) 11, 820
MspCI CTTAAG 1 cut(s) 1100
MspI CCGG 3 cut(s) 88, 155, 859
MspR9I CCNGG 8 cut(s) 88, 89, 155, 434, 514, 657, 1013, 1110
MunI CAATTG 2 cut(s) 192, 720
Mva1269I GAATGC 2 cut(s) 895, 963
MvaI CCWGG 5 cut(s) 434, 514, 657, 1013, 1110
MwoI GCNNNNNNNGC 4 cut(s) 179, 397, 438, 660
NciI CCSGG 3 cut(s) 88, 89, 155
NcoI CCATGG 1 cut(s) 296
NdeI CATATG 1 cut(s) 772
NdeII GATC 7 cut(s) 68, 279, 402, 588, 704, 832, 861
NlaIV GGNNCC 4 cut(s) 337, 368, 1107, 1122
NmuCI GTSAC 1 cut(s) 781
NsiI ATGCAT 1 cut(s) 911
NspI RCATGY 4 cut(s) 475, 667, 745, 1155
OliI CACNNNNGTG 1 cut(s) 937
PaeI GCATGC 1 cut(s) 667
PagI TCATGA 1 cut(s) 316
PaqCI CACCTGC 1 cut(s) 416
PciI ACATGT 1 cut(s) 471
PcsI WCGNNNNNNNCGW 2 cut(s) 79, 993
PctI GAATGC 2 cut(s) 895, 963
PdmI GAANNNNTTC 1 cut(s) 149
PfeI GAWTC 1 cut(s) 487
PfoI TCCNGGA 1 cut(s) 153
PkrI GCNGC 5 cut(s) 10, 822, 895, 921, 1140
Ple19I CGATCG 1 cut(s) 707
PleI GAGTC 3 cut(s) 242, 547, 623
PpsI GAGTC 3 cut(s) 242, 547, 623
Ppu21I YACGTR 1 cut(s) 900
PscI ACATGT 1 cut(s) 471
PsiI TTATAA 1 cut(s) 806
Psp6I CCWGG 5 cut(s) 432, 512, 655, 1011, 1108
PspGI CCWGG 5 cut(s) 432, 512, 655, 1011, 1108
PspN4I GGNNCC 4 cut(s) 337, 368, 1107, 1122
PspPI GGNCC 1 cut(s) 336
PsrI GAACNNNNNNTAC 2 cut(s) 97, 129
PstI CTGCAG 1 cut(s) 924
PstNI CAGNNNCTG 1 cut(s) 755
PsuI RGATCY 2 cut(s) 68, 279
PvuI CGATCG 1 cut(s) 707
PvuII CAGCTG 1 cut(s) 11
RseI CAYNNNNRTG 3 cut(s) 596, 869, 937
SaqAI TTAA 4 cut(s) 498, 522, 678, 1101
SatI GCNGC 5 cut(s) 9, 821, 894, 920, 1139
Sau3AI GATC 7 cut(s) 68, 279, 402, 588, 704, 832, 861
Sau96I GGNCC 1 cut(s) 336
SchI GAGTC 3 cut(s) 242, 547, 623
ScrFI CCNGG 8 cut(s) 88, 89, 155, 434, 514, 657, 1013, 1110
SduI GDGCHC 1 cut(s) 88
SfaNI GCATC 2 cut(s) 24, 832
SfcI CTRYAG 1 cut(s) 920
SmaI CCCGGG 1 cut(s) 89
SmiMI CAYNNNNRTG 3 cut(s) 596, 869, 937
SmlI CTYRAG 2 cut(s) 1042, 1100
SmoI CTYRAG 2 cut(s) 1042, 1100
SphI GCATGC 1 cut(s) 667
Sse9I AATT 7 cut(s) 192, 235, 328, 697, 720, 762, 807
SsiI CCGC 4 cut(s) 745, 818, 1063, 1138
SspMI CTAG 3 cut(s) 38, 60, 651
StyD4I CCNGG 8 cut(s) 86, 87, 153, 432, 512, 655, 1011, 1108
StyI CCWWGG 1 cut(s) 296
TaiI ACGT 3 cut(s) 327, 902, 999
TaqI TCGA 2 cut(s) 1049, 1085
TasI AATT 7 cut(s) 192, 235, 328, 697, 720, 762, 807
TauI GCSGC 1 cut(s) 1141
TfiI GAWTC 1 cut(s) 487
Tru1I TTAA 4 cut(s) 498, 522, 678, 1101
Tru9I TTAA 4 cut(s) 498, 522, 678, 1101
TscAI CASTG 5 cut(s) 124, 275, 420, 580, 790
TseFI GTSAC 1 cut(s) 781
TseI GCWGC 4 cut(s) 8, 820, 893, 919
Tsp45I GTSAC 1 cut(s) 781
TspDTI ATGAA 7 cut(s) 183, 228, 333, 633, 1073, 1152, 1157
TspGWI ACGGA 1 cut(s) 197
TspMI CCCGGG 1 cut(s) 87
TspRI CASTG 5 cut(s) 124, 275, 420, 580, 790
Vha464I CTTAAG 1 cut(s) 1100
XapI RAATTY 3 cut(s) 235, 328, 697
XceI RCATGY 4 cut(s) 475, 667, 745, 1155
XcmI CCANNNNNNNNNTGG 1 cut(s) 124
XmaI CCCGGG 1 cut(s) 87
XmnI GAANNNNTTC 1 cut(s) 149
XspI CTAG 3 cut(s) 38, 60, 651
Zsp2I ATGCAT 1 cut(s) 911
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.