Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0006834

Physical Location & Seq

Genomic Coordinates Reverse (-)

52253113 .. 52256810

Gene Structure 3698 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG300700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

ATGGAAGGACTGGTCATGCTGAGGCAGCTCATCGGTCAGCTTCAGGAGTTCGTTCAATTCCACGGCTCTCCACCTCAACCTCAACCTCATCTTCTTCTTCATCTTCAGCAGCAGCAGCAGCAGCAGCAGCTTCCGCTACTCAACCGCAGGTGGTGCTCCTCTAATGTTGATGATAGTTCTGTAGATGATTACTACAGTTTTATGATGGCAGCTGGTAAATCTGGAAGTGTCAAGATGTTAGAACCTTCCAAGCCTCCTCCTAGTAAGAGATCTCGTAAGGAGCGAGCCCGGGGTAAATCATCAGGAACGACAAATACCACTGAGCCCATGGAACAACATATTTGGAAAGATTTCCCGGAAGACCTTTATGAAGCTGTTATTGCAAGGCTTCCAATTGCCACATTTTTCCGTTTTCGTTCTGTTTGCAGGAAATGGAATTCCTTGCTGGACTCTGAAAGTTTCTCTCAGCAATGTGCAGAGATCCCACAAGCTAATCCATGGTTTTACACCATCACTCATGAAAACGTGAATTCTGGGGCCATGTATGACCCTTCCTTGAAGAAGTGGCACCATCCCACGATTTCTTCTCTGCCAACAAAGCTGATCGTCTTGCCTGTGGCTTCAGCAGGTGGCCTGGTTTGCTTTCTCGATATTGGTAATAGAAACTTCTACGTGTGTAACCCTCTCAATCAATCTTTTAAAGAGTTGCCAGCCAGGTCAGTTAAGGTCTGGTCTCGTATTGCTGTGGGGATGACTCTGAATGGGAGTTCTACCAGTGGGGGCTACAAGATCATGTGGGTGGGTTGCGATGGTGAGTATGAAGTTTATGACTCACTAAGGAACTCTTGGACTCGCCCTGGAAGCATGCCATCAAGTGTTAAGCTTCCACTATCCCTGAATTTCCGATCACAGGCTGTTACAATTGATAGCACACTTTACTTCATGCGGTCAGACCCTGAAGGAATTGTGTCATATGATATGGTCACTGGGGTTTGGAAGCAGTTTATAATTCCCACACCGCTGCATCTGACTGACCACACACTTGCTGAATGTGGAGGCCGGATCATGCTGGTGGGATTGTTGTCAAAGAATGCTGCTACGTGCGTATGCATTTGGGAGCTGCAGAAAATGACACTTTTGTGGAAGGAGGTTGACAGAATGCCAAATATATGGTGCTTGGAGTTTTACGGCAAGCACGTTAGGATGACTTGCCTGGGTAACAAAGGCTTACTCATGTTGTCCTTGAGGTCAAGACAAATGAACCGCTTGGTTACTTACAATGTTTCAAGCAGGGAATGGCTTAAGGTTCCTGGTTGCGTGGTGCCACATGGGAGGAAGCGGCAATGGATTGCATGTGGCACTTCATTTCATCCATGCCTGACTGCTGTGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009653 GO:0009965 GO:0009966 GO:0009987 GO:0010016 GO:0010051 GO:0010305 GO:0010498 GO:0010646 GO:0010928 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0023051 GO:0030163 GO:0031146 GO:0032446 GO:0032501 GO:0032502 GO:0036211 GO:0043161 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048366 GO:0048367 GO:0048583 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051603 GO:0060776 GO:0065007 GO:0070647 GO:0071704 GO:0099402 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box

Protein Analysis

464

Amino Acids

52.62

Weight (kDa)

9.17

Isoelectric Point (pI)

55.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	115 - 154	5.4e-08	F-box domain
FBA_1	PF07734	182 - 389	9.7e-09	F-box associated beta propeller domain
b-prop_At3g26010-like	PF24750	199 - 384	2.5e-09	F-box protein At3g26010-like, beta-propeller

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006834)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27340
fragaria_vesca	FvH4_4g23620 FvH4_4g23620 FvH4_4g23620
malus_domestica	MD13G1120600.v1.1
prunus_persica	Prupe.1G224600_v2.0.a1 Prupe.1G224600_v2.0.a1 Prupe.1G224600_v2.0.a1 Prupe.1G224600_v2.0.a1 Prupe.1G224600_v2.0.a1 Prupe.1G224600_v2.0.a1 Prupe.1G224600_v2.0.a1
pyrus_communis	pycom13g10500 pycom16g10300
rosa_chinensis	RchiOBHm_Chr4g0430081
rosa_laevigata	RLG00000007005
rosa_multiflora	Rmu_ssc0000150.1_g000027
rosa_roxburghii	Rroxscaffold_5G00371890
rosa_rugosa	Rorug04G0239900 Rorug04G0239900 Rorug04G0240000
rosa_samantha	Rh4AG297000 Rh4BG303500 Rh4CG319000 Rh4DG300700
rosa_wichuraiana	Rw4G025750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1007
AarI	CACCTGC	2 cut(s)	138, 617
Acc36I	ACCTGC	2 cut(s)	138, 617
AccB1I	GGYRCC	2 cut(s)	567, 1321
AciI	CCGC	6 cut(s)	134, 145, 946, 1019, 1264, 1339
AclWI	GGATC	2 cut(s)	475, 1070
AcsI	RAATTY	3 cut(s)	436, 529, 898
AcuI	CTGAAG	4 cut(s)	26, 89, 606, 978
AfiI	CCNNNNNNNGG	1 cut(s)	910
AflII	CTTAAG	1 cut(s)	1301
AflIII	ACRYGT	1 cut(s)	672
AgsI	TTSAA	3 cut(s)	56, 559, 1287
AjnI	CCWGG	5 cut(s)	633, 713, 856, 1212, 1309
AleI	CACNNNNGTG	1 cut(s)	1138
AluBI	AGCT	9 cut(s)	28, 40, 130, 212, 374, 491, 601, 883, 1120
AluI	AGCT	9 cut(s)	28, 40, 130, 212, 374, 491, 601, 883, 1120
Alw21I	GWGCWC	1 cut(s)	158
Alw26I	GTCTC	1 cut(s)	738
AlwI	GGATC	2 cut(s)	475, 1070
AlwNI	CAGNNNCTG	1 cut(s)	956
Ama87I	CYCGRG	1 cut(s)	288
AoxI	GGCC	3 cut(s)	537, 631, 1057
ApoI	RAATTY	3 cut(s)	436, 529, 898
Asp700I	GAANNNNTTC	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	537
AsuC2I	CCSGG	3 cut(s)	289, 290, 356
AsuHPI	GGTGA	1 cut(s)	824
AvaI	CYCGRG	1 cut(s)	288
BanI	GGYRCC	2 cut(s)	567, 1321
BanII	GRGCYC	2 cut(s)	289, 327
BbsI	GAAGAC	1 cut(s)	366
Bbv12I	GWGCWC	1 cut(s)	158
BbvCI	CCTCAGC	1 cut(s)	20
BccI	CCATC	5 cut(s)	199, 518, 579, 803, 877
BceAI	ACGGC	2 cut(s)	79, 1204
BciT130I	CCWGG	5 cut(s)	635, 715, 858, 1214, 1311
BcnI	CCSGG	3 cut(s)	289, 290, 356
BcoDI	GTCTC	1 cut(s)	738
BfaI	CTAG	1 cut(s)	261
BfmI	CTRYAG	3 cut(s)	180, 193, 1121
BfrI	CTTAAG	1 cut(s)	1301
BfuAI	ACCTGC	2 cut(s)	138, 617
BglII	AGATCT	1 cut(s)	269
Bme1390I	CCNGG	8 cut(s)	289, 290, 356, 635, 715, 858, 1214, 1311
BmeT110I	CYCGRG	1 cut(s)	288
BmgT120I	GGNCC	1 cut(s)	537
BmiI	GGNNCC	4 cut(s)	538, 569, 1308, 1323
BmrFI	CCNGG	8 cut(s)	289, 290, 356, 635, 715, 858, 1214, 1311
BmrI	ACTGGG	1 cut(s)	996
BmsI	GCATC	1 cut(s)	1033
BmuI	ACTGGG	1 cut(s)	996
BpiI	GAAGAC	1 cut(s)	366
Bpu10I	CCTNAGC	1 cut(s)	20
BpuEI	CTTGAG	1 cut(s)	1264
BpuMI	CCSGG	3 cut(s)	289, 290, 356
BsaAI	YACGTR	2 cut(s)	673, 1101
BsaI	GGTCTC	1 cut(s)	738
BsaJI	CCNNGG	7 cut(s)	61, 288, 289, 327, 497, 856, 1213
Bsc4I	CCNNNNNNNGG	1 cut(s)	910
Bse1I	ACTGG	3 cut(s)	15, 774, 991
Bse3DI	GCAATG	2 cut(s)	476, 1349
BseBI	CCWGG	5 cut(s)	635, 715, 858, 1214, 1311
BseDI	CCNNGG	7 cut(s)	61, 288, 289, 327, 497, 856, 1213
BseGI	GGATG	4 cut(s)	571, 756, 1209, 1369
BseLI	CCNNNNNNNGG	1 cut(s)	910
BseMI	GCAATG	2 cut(s)	476, 1349
BseMII	CTCAG	3 cut(s)	11, 312, 479
BseNI	ACTGG	3 cut(s)	15, 774, 991
BseRI	GAGGAG	2 cut(s)	148, 246
BsgI	GTGCAG	1 cut(s)	495
BshFI	GGCC	3 cut(s)	539, 633, 1059
BshNI	GGYRCC	2 cut(s)	567, 1321
BsiHKAI	GWGCWC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	288
BsiSI	CCGG	3 cut(s)	289, 356, 1060
BslI	CCNNNNNNNGG	1 cut(s)	910
BsmAI	GTCTC	1 cut(s)	738
BsmI	GAATGC	2 cut(s)	1096, 1164
BsnI	GGCC	3 cut(s)	539, 633, 1059
Bso31I	GGTCTC	1 cut(s)	738
BsoBI	CYCGRG	1 cut(s)	288
Bsp1286I	GDGCHC	3 cut(s)	158, 289, 327
Bsp143I	GATC	6 cut(s)	269, 480, 603, 789, 905, 1062
Bsp19I	CCATGG	2 cut(s)	327, 497
BspACI	CCGC	6 cut(s)	134, 145, 946, 1019, 1264, 1339
BspANI	GGCC	3 cut(s)	539, 633, 1059
BspCNI	CTCAG	3 cut(s)	12, 313, 478
BspHI	TCATGA	1 cut(s)	517
BspLI	GGNNCC	4 cut(s)	538, 569, 1308, 1323
BspMAI	CTGCAG	1 cut(s)	1125
BspMI	ACCTGC	2 cut(s)	138, 617
BspPI	GGATC	2 cut(s)	475, 1070
BspT107I	GGYRCC	2 cut(s)	567, 1321
BspTI	CTTAAG	1 cut(s)	1301
BspTNI	GGTCTC	1 cut(s)	738
BsrDI	GCAATG	2 cut(s)	476, 1349
BsrI	ACTGG	3 cut(s)	15, 774, 991
BssECI	CCNNGG	7 cut(s)	61, 288, 289, 327, 497, 856, 1213
BssMI	GATC	6 cut(s)	269, 480, 603, 789, 905, 1062
BssT1I	CCWWGG	2 cut(s)	327, 497
Bst2UI	CCWGG	5 cut(s)	635, 715, 858, 1214, 1311
Bst4CI	ACNGT	1 cut(s)	197
BstAFI	CTTAAG	1 cut(s)	1301
BstAPI	GCANNNNNTGC	1 cut(s)	153
BstBAI	YACGTR	2 cut(s)	673, 1101
BstC8I	GCNNGC	4 cut(s)	285, 711, 866, 1193
BstDEI	CTNAG	4 cut(s)	20, 321, 465, 836
BstDSI	CCRYGG	3 cut(s)	61, 327, 497
BstF5I	GGATG	4 cut(s)	571, 756, 1209, 1369
BstKTI	GATC	6 cut(s)	272, 483, 606, 792, 908, 1065
BstMAI	GTCTC	1 cut(s)	738
BstMBI	GATC	6 cut(s)	269, 480, 603, 789, 905, 1062
BstNI	CCWGG	5 cut(s)	635, 715, 858, 1214, 1311
BstNSI	RCATGY	2 cut(s)	868, 1356
BstSCI	CCNGG	8 cut(s)	287, 288, 354, 633, 713, 856, 1212, 1309
BstSFI	CTRYAG	3 cut(s)	180, 193, 1121
BstV2I	GAAGAC	1 cut(s)	366
BstX2I	RGATCY	2 cut(s)	269, 480
BstXI	CCANNNNNNTGG	1 cut(s)	1170
BstYI	RGATCY	2 cut(s)	269, 480
BsuRI	GGCC	3 cut(s)	539, 633, 1059
BtgI	CCRYGG	3 cut(s)	61, 327, 497
BtgZI	GCGATG	1 cut(s)	822
BtsCI	GGATG	4 cut(s)	571, 756, 1209, 1369
BtsIMutI	CAGTG	3 cut(s)	318, 781, 984
BveI	ACCTGC	2 cut(s)	138, 617
Cac8I	GCNNGC	4 cut(s)	285, 711, 866, 1193
CaiI	CAGNNNCTG	1 cut(s)	956
CciI	TCATGA	1 cut(s)	517
Cfr13I	GGNCC	1 cut(s)	537
Cfr9I	CCCGGG	1 cut(s)	288
DdeI	CTNAG	4 cut(s)	20, 321, 465, 836
DpnI	GATC	6 cut(s)	271, 482, 605, 791, 907, 1064
DpnII	GATC	6 cut(s)	269, 480, 603, 789, 905, 1062
DraI	TTTAAA	1 cut(s)	700
Eco130I	CCWWGG	2 cut(s)	327, 497
Eco24I	GRGCYC	2 cut(s)	289, 327
Eco31I	GGTCTC	1 cut(s)	738
Eco57I	CTGAAG	4 cut(s)	26, 89, 606, 978
Eco88I	CYCGRG	1 cut(s)	288
EcoRI	GAATTC	2 cut(s)	436, 529
EcoRII	CCWGG	5 cut(s)	633, 713, 856, 1212, 1309
EcoT14I	CCWWGG	2 cut(s)	327, 497
EcoT22I	ATGCAT	1 cut(s)	1112
EcoT38I	GRGCYC	2 cut(s)	289, 327
ErhI	CCWWGG	2 cut(s)	327, 497
FalI	AAGNNNNNCTT	2 cut(s)	829, 861
FauNDI	CATATG	1 cut(s)	973
FokI	GGATG	4 cut(s)	558, 763, 1216, 1356
FriOI	GRGCYC	2 cut(s)	289, 327
FspBI	CTAG	1 cut(s)	261
HaeIII	GGCC	3 cut(s)	539, 633, 1059
HapII	CCGG	3 cut(s)	289, 356, 1060
HincII	GTYRAC	1 cut(s)	1153
HindII	GTYRAC	1 cut(s)	1153
HindIII	AAGCTT	1 cut(s)	881
HinfI	GANTC	4 cut(s)	449, 754, 830, 850
HpaII	CCGG	3 cut(s)	289, 356, 1060
HphI	GGTGA	1 cut(s)	824
Hpy166II	GTNNAC	1 cut(s)	1153
Hpy188I	TCNGA	5 cut(s)	454, 759, 905, 952, 1029
Hpy188III	TCNNGA	7 cut(s)	44, 222, 232, 303, 518, 647, 1251
Hpy8I	GTNNAC	1 cut(s)	1153
HpyAV	CCTTC	4 cut(s)	255, 561, 953, 1138
HpyCH4III	ACNGT	1 cut(s)	197
HpyCH4IV	ACGT	4 cut(s)	525, 672, 1100, 1197
HpyCH4V	TGCA	7 cut(s)	383, 426, 476, 1024, 1110, 1123, 1352
HpyF3I	CTNAG	4 cut(s)	20, 321, 465, 836
HpySE526I	ACGT	4 cut(s)	525, 672, 1100, 1197
Kzo9I	GATC	6 cut(s)	269, 480, 603, 789, 905, 1062
LmnI	GCTCC	3 cut(s)	161, 280, 1117
LweI	GCATC	1 cut(s)	1033
MaeI	CTAG	1 cut(s)	261
MaeII	ACGT	4 cut(s)	525, 672, 1100, 1197
MaeIII	GTNAC	5 cut(s)	677, 916, 982, 1217, 1270
MalI	GATC	6 cut(s)	271, 482, 605, 791, 907, 1064
MboI	GATC	6 cut(s)	269, 480, 603, 789, 905, 1062
MboII	GAAGA	7 cut(s)	83, 86, 89, 95, 371, 571, 576
MfeI	CAATTG	2 cut(s)	393, 921
MflI	RGATCY	2 cut(s)	269, 480
MhlI	GDGCHC	3 cut(s)	158, 289, 327
MluCI	AATT	8 cut(s)	56, 393, 436, 529, 898, 921, 963, 1008
MlyI	GAGTC	4 cut(s)	443, 748, 824, 844
Mph1103I	ATGCAT	1 cut(s)	1112
MroXI	GAANNNNTTC	1 cut(s)	350
MseI	TTAA	4 cut(s)	699, 723, 879, 1302
MslI	CAYNNNNRTG	3 cut(s)	797, 1070, 1138
MspA1I	CMGCKG	2 cut(s)	212, 1021
MspCI	CTTAAG	1 cut(s)	1301
MspI	CCGG	3 cut(s)	289, 356, 1060
MspR9I	CCNGG	8 cut(s)	289, 290, 356, 635, 715, 858, 1214, 1311
MunI	CAATTG	2 cut(s)	393, 921
Mva1269I	GAATGC	2 cut(s)	1096, 1164
MvaI	CCWGG	5 cut(s)	635, 715, 858, 1214, 1311
NciI	CCSGG	3 cut(s)	289, 290, 356
NcoI	CCATGG	2 cut(s)	327, 497
NdeI	CATATG	1 cut(s)	973
NdeII	GATC	6 cut(s)	269, 480, 603, 789, 905, 1062
NlaIV	GGNNCC	4 cut(s)	538, 569, 1308, 1323
NmuCI	GTSAC	1 cut(s)	982
NsiI	ATGCAT	1 cut(s)	1112
NspI	RCATGY	2 cut(s)	868, 1356
OliI	CACNNNNGTG	1 cut(s)	1138
PaeI	GCATGC	1 cut(s)	868
PagI	TCATGA	1 cut(s)	517
PaqCI	CACCTGC	2 cut(s)	138, 617
PcsI	WCGNNNNNNNCGW	2 cut(s)	280, 1194
PctI	GAATGC	2 cut(s)	1096, 1164
PdmI	GAANNNNTTC	1 cut(s)	350
PfoI	TCCNGGA	1 cut(s)	354
PleI	GAGTC	4 cut(s)	443, 748, 824, 844
PpsI	GAGTC	4 cut(s)	443, 748, 824, 844
Ppu21I	YACGTR	2 cut(s)	673, 1101
PsiI	TTATAA	1 cut(s)	1007
Psp6I	CCWGG	5 cut(s)	633, 713, 856, 1212, 1309
PspGI	CCWGG	5 cut(s)	633, 713, 856, 1212, 1309
PspN4I	GGNNCC	4 cut(s)	538, 569, 1308, 1323
PspPI	GGNCC	1 cut(s)	537
PsrI	GAACNNNNNNTAC	2 cut(s)	298, 330
PstI	CTGCAG	1 cut(s)	1125
PstNI	CAGNNNCTG	1 cut(s)	956
PsuI	RGATCY	2 cut(s)	269, 480
PvuII	CAGCTG	1 cut(s)	212
RseI	CAYNNNNRTG	3 cut(s)	797, 1070, 1138
SaqAI	TTAA	4 cut(s)	699, 723, 879, 1302
Sau3AI	GATC	6 cut(s)	269, 480, 603, 789, 905, 1062
Sau96I	GGNCC	1 cut(s)	537
SchI	GAGTC	4 cut(s)	443, 748, 824, 844
ScrFI	CCNGG	8 cut(s)	289, 290, 356, 635, 715, 858, 1214, 1311
SduI	GDGCHC	3 cut(s)	158, 289, 327
SfaNI	GCATC	1 cut(s)	1033
SfcI	CTRYAG	3 cut(s)	180, 193, 1121
SmaI	CCCGGG	1 cut(s)	290
SmiMI	CAYNNNNRTG	3 cut(s)	797, 1070, 1138
SmlI	CTYRAG	2 cut(s)	1243, 1301
SmoI	CTYRAG	2 cut(s)	1243, 1301
SphI	GCATGC	1 cut(s)	868
Sse9I	AATT	8 cut(s)	56, 393, 436, 529, 898, 921, 963, 1008
SsiI	CCGC	6 cut(s)	134, 145, 946, 1019, 1264, 1339
SspMI	CTAG	1 cut(s)	261
StyD4I	CCNGG	8 cut(s)	287, 288, 354, 633, 713, 856, 1212, 1309
StyI	CCWWGG	2 cut(s)	327, 497
TaaI	ACNGT	1 cut(s)	197
TaiI	ACGT	4 cut(s)	528, 675, 1103, 1200
TaqI	TCGA	1 cut(s)	648
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	8 cut(s)	56, 393, 436, 529, 898, 921, 963, 1008
TauI	GCSGC	1 cut(s)	1342
Tru1I	TTAA	4 cut(s)	699, 723, 879, 1302
Tru9I	TTAA	4 cut(s)	699, 723, 879, 1302
TscAI	CASTG	3 cut(s)	325, 781, 991
TseFI	GTSAC	1 cut(s)	982
Tsp45I	GTSAC	1 cut(s)	982
TspDTI	ATGAA	8 cut(s)	89, 384, 534, 834, 931, 1274, 1353, 1358
TspGWI	ACGGA	1 cut(s)	398
TspMI	CCCGGG	1 cut(s)	288
TspRI	CASTG	3 cut(s)	325, 781, 991
Vha464I	CTTAAG	1 cut(s)	1301
XapI	RAATTY	3 cut(s)	436, 529, 898
XceI	RCATGY	2 cut(s)	868, 1356
XcmI	CCANNNNNNNNNTGG	1 cut(s)	325
XmaI	CCCGGG	1 cut(s)	288
XmnI	GAANNNNTTC	1 cut(s)	350
XspI	CTAG	1 cut(s)	261
Zsp2I	ATGCAT	1 cut(s)	1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.