AT1G27380

P21-Rho-binding domain

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
9508680 .. 9510269
1590 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G27380.2

Sequence Viewer

Length: 336 bp
ATGGACAGAAACGGTGCTAATATGTTAGATGGAAGAGTAGAAAGTGATGCAAAGGGCTCATTTAGAAAGGATTACACAAAGATGGAGAACAACAACAACGGTGCTAATATCTCAGATGGTATCTACAGAATTATTCGCAGCTTCAAGAGTTTCTCGCACTTTTTCATACGTTACGAAGAGGAGACGAAAGAGAGAGAAGCGGAGATGGAGATAGGATTTCCAACGGACGTGAAGCACTTGAGCCACATCGGAGTTGATGGAACCATGACCACTTTCGACAACACCTCCTCATCTTTTCCATTCTCCGGTTTCCATCTCACCGGCACCGTCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

111

Amino Acids

12.59

Weight (kDa)

5.5

Isoelectric Point (pI)

28.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012882)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 323
AciI CCGC 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 305
AgsI TTSAA 1 cut(s) 145
AjiI CACGTC 1 cut(s) 229
AluBI AGCT 1 cut(s) 141
AluI AGCT 1 cut(s) 141
Alw26I GTCTC 1 cut(s) 176
ApeKI GCWGC 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 310
BanI GGYRCC 1 cut(s) 323
BanII GRGCYC 1 cut(s) 59
BbvI GCAGC 1 cut(s) 150
BccI CCATC 6 cut(s) 23, 76, 110, 199, 251, 321
BcoDI GTCTC 1 cut(s) 176
BfmI CTRYAG 1 cut(s) 124
BisI GCNGC 1 cut(s) 139
BlsI GCNGC 1 cut(s) 140
BmgBI CACGTC 1 cut(s) 229
BmiI GGNNCC 2 cut(s) 262, 325
BmsI GCATC 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 259
BsaWI WCCGGW 1 cut(s) 305
BsaXI ACNNNNNCTCC 2 cut(s) 269, 299
Bsc4I CCNNNNNNNGG 1 cut(s) 305
Bse118I RCCGGY 1 cut(s) 320
BseLI CCNNNNNNNGG 1 cut(s) 305
BseMII CTCAG 1 cut(s) 126
BseRI GAGGAG 2 cut(s) 194, 277
BseXI GCAGC 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 323
BsiSI CCGG 2 cut(s) 306, 321
BslI CCNNNNNNNGG 1 cut(s) 305
BsmAI GTCTC 1 cut(s) 176
BsmBI CGTCTC 1 cut(s) 176
Bsp1286I GDGCHC 1 cut(s) 59
BspACI CCGC 1 cut(s) 200
BspCNI CTCAG 1 cut(s) 125
BspLI GGNNCC 2 cut(s) 262, 325
BspT107I GGYRCC 1 cut(s) 323
BsrFI RCCGGY 1 cut(s) 320
BssAI RCCGGY 1 cut(s) 320
Bst4CI ACNGT 3 cut(s) 14, 101, 328
Bst6I CTCTTC 2 cut(s) 28, 171
BstDEI CTNAG 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 176
BstSFI CTRYAG 1 cut(s) 124
BstV1I GCAGC 1 cut(s) 150
BtrI CACGTC 1 cut(s) 229
Cfr10I RCCGGY 1 cut(s) 320
CviAII CATG 1 cut(s) 265
CviJI RGCY 3 cut(s) 57, 141, 243
CviKI_1 RGCY 3 cut(s) 57, 141, 243
DdeI CTNAG 1 cut(s) 112
Eam1104I CTCTTC 2 cut(s) 28, 171
EarI CTCTTC 2 cut(s) 28, 171
Eco24I GRGCYC 1 cut(s) 59
EcoT38I GRGCYC 1 cut(s) 59
Esp3I CGTCTC 1 cut(s) 176
FaeI CATG 1 cut(s) 268
FaiI YATR 3 cut(s) 23, 167, 266
FatI CATG 1 cut(s) 264
Fnu4HI GCNGC 1 cut(s) 139
FriOI GRGCYC 1 cut(s) 59
Fsp4HI GCNGC 1 cut(s) 139
GluI GCNGC 1 cut(s) 139
HapII CCGG 2 cut(s) 306, 321
Hin1II CATG 1 cut(s) 268
HpaII CCGG 2 cut(s) 306, 321
HphI GGTGA 1 cut(s) 310
Hpy188I TCNGA 3 cut(s) 115, 251, 335
Hpy188III TCNNGA 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 332
HpyCH4III ACNGT 3 cut(s) 14, 101, 328
HpyCH4IV ACGT 2 cut(s) 169, 228
HpyCH4V TGCA 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 112
HpySE526I ACGT 2 cut(s) 169, 228
Hsp92II CATG 1 cut(s) 268
LpnPI CCDG 1 cut(s) 319
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 1 cut(s) 37
MaeII ACGT 2 cut(s) 169, 228
MaeIII GTNAC 1 cut(s) 170
MboII GAAGA 2 cut(s) 45, 188
MhlI GDGCHC 1 cut(s) 59
MluCI AATT 1 cut(s) 129
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 3 cut(s) 172, 295, 298
MslI CAYNNNNRTG 1 cut(s) 80
MspI CCGG 2 cut(s) 306, 321
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 2 cut(s) 262, 325
PkrI GCNGC 1 cut(s) 140
PspN4I GGNNCC 2 cut(s) 262, 325
RseI CAYNNNNRTG 1 cut(s) 80
SatI GCNGC 1 cut(s) 139
SduI GDGCHC 1 cut(s) 59
SetI ASST 4 cut(s) 143, 172, 231, 287
SfaNI GCATC 1 cut(s) 37
SfcI CTRYAG 1 cut(s) 124
SgeI CNNG 6 cut(s) 157, 166, 241, 250, 277, 318
SmiMI CAYNNNNRTG 1 cut(s) 80
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
Sse9I AATT 1 cut(s) 129
SsiI CCGC 1 cut(s) 200
TaaI ACNGT 3 cut(s) 14, 101, 328
TaiI ACGT 2 cut(s) 172, 231
TaqI TCGA 1 cut(s) 276
TasI AATT 1 cut(s) 129
TseI GCWGC 1 cut(s) 138
TspDTI ATGAA 1 cut(s) 154
TspGWI ACGGA 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.