Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0011440

Physical Location & Seq

Genomic Coordinates Forward (+)

16003872 .. 16007180

Gene Structure 3309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0102200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGACTTTGGAGGAAAAGATTGGCCAGATGACACAGATAGAGTGCAGTGTTGCTTCAGCTGAGGTCATGAACAAGTACTACATTGGGAGTGTCTTGAGCGGCGGTGGGAGTGTGCCATCAGAAGAAGCTTCTGCAGAAACTTGGGTTACAATGGTGAATGATTTTCAAAAGGGTTCTCTATCAACTCGCCTCTGTATTCCAATGATTTATGGTATTAATGCTGTTCATGGCCACAATAATGTCTACAAGGCAACAATCTTTCCCCACAATGTTGGCCTCGGAGTTACCAGGGACCCTGAACTTGTTAAGGAGATTGGAGCTGCAACTGCACTTGAAGTTAGAGCCACAGGCATTCCATATGTCTTGCACCATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006417 GO:0006446 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0033993 GO:0034248 GO:0034250 GO:0034284 GO:0034285 GO:0034286 GO:0042221 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045948 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:1901700 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 ko03013 ko05162 map00906 map01100 map01110 map03013 map05162

Pfam Domains

Protein Families

JAB

Protein Analysis

125

Amino Acids

13.42

Weight (kDa)

5.65

Isoelectric Point (pI)

26.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_3	PF00933	2 - 119	2.5e-19	Glycosyl hydrolase family 3 N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10840 AT1G10840
fragaria_vesca	FvH4_4g12310 FvH4_4g12310 FvH4_4g12310
malus_domestica	MD04G1027700.v1.1
prunus_persica	Prupe.1G177100_v2.0.a1
pyrus_communis	pycom04g02430
rosa_chinensis	RchiOBHm_Chr4g0410381
rosa_laevigata	RLG00000008432
rosa_multiflora	Rmu_co8348189.1_g000001 Rmu_sc0002111.1_g000016
rosa_roxburghii	Rroxscaffold_5G00355200
rosa_rugosa	Rorug04G0102200 Rorug04G0102200
rosa_samantha	Rh4AG160400 Rh4BG159500 Rh4CG172500 Rh4DG155300
rosa_wichuraiana	Rw4G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	99
AccI	GTMKAC	1 cut(s)	243
AciI	CCGC	2 cut(s)	99, 102
AcoI	YGGCCR	2 cut(s)	22, 229
AcuI	CTGAAG	1 cut(s)	39
AfaI	GTAC	1 cut(s)	77
AgsI	TTSAA	2 cut(s)	167, 335
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	3 cut(s)	59, 128, 320
AluI	AGCT	3 cut(s)	59, 128, 320
AoxI	GGCC	3 cut(s)	22, 229, 274
ApeKI	GCWGC	1 cut(s)	320
AseI	ATTAAT	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	166
AvaII	GGWCC	1 cut(s)	292
BalI	TGGCCA	2 cut(s)	24, 231
BbvCI	CCTCAGC	1 cut(s)	60
BbvI	GCAGC	1 cut(s)	307
BccI	CCATC	1 cut(s)	124
BciT130I	CCWGG	1 cut(s)	289
BfmI	CTRYAG	1 cut(s)	132
BisI	GCNGC	2 cut(s)	100, 321
BlsI	GCNGC	2 cut(s)	101, 322
BmcAI	AGTACT	1 cut(s)	77
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	292
BmiI	GGNNCC	2 cut(s)	293, 294
BmrFI	CCNGG	1 cut(s)	289
Bpu10I	CCTNAGC	1 cut(s)	60
BpuEI	CTTGAG	1 cut(s)	115
BsaJI	CCNNGG	2 cut(s)	277, 288
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	277, 288
BseMII	CTCAG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	307
BsgI	GTGCAG	2 cut(s)	64, 312
BshFI	GGCC	3 cut(s)	24, 231, 276
BslFI	GGGAC	1 cut(s)	305
BsmFI	GGGAC	1 cut(s)	305
BsmI	GAATGC	1 cut(s)	351
BsnI	GGCC	3 cut(s)	24, 231, 276
BspACI	CCGC	2 cut(s)	99, 102
BspANI	GGCC	3 cut(s)	24, 231, 276
BspCNI	CTCAG	1 cut(s)	52
BspHI	TCATGA	1 cut(s)	66
BspLI	GGNNCC	2 cut(s)	293, 294
BspMAI	CTGCAG	1 cut(s)	136
BsrBI	CCGCTC	1 cut(s)	99
BssECI	CCNNGG	2 cut(s)	277, 288
Bst2UI	CCWGG	1 cut(s)	289
BstDEI	CTNAG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	287
BstSFI	CTRYAG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	307
BstXI	CCANNNNNNTGG	1 cut(s)	272
BsuRI	GGCC	3 cut(s)	24, 231, 276
BtsI	GCAGTG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	52
CciI	TCATGA	1 cut(s)	66
Cfr13I	GGNCC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	3 cut(s)	67, 227, 371
CviJI	RGCY	7 cut(s)	24, 59, 128, 231, 276, 320, 344
CviKI_1	RGCY	7 cut(s)	24, 59, 128, 231, 276, 320, 344
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	60
EaeI	YGGCCR	2 cut(s)	22, 229
Eco47I	GGWCC	1 cut(s)	292
Eco57I	CTGAAG	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	287
EcoT22I	ATGCAT	1 cut(s)	376
FaeI	CATG	3 cut(s)	70, 230, 374
FaiI	YATR	7 cut(s)	68, 210, 228, 358, 360, 372, 376
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	3 cut(s)	66, 226, 370
FauNDI	CATATG	1 cut(s)	358
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	100, 321
Fsp4HI	GCNGC	2 cut(s)	100, 321
GluI	GCNGC	2 cut(s)	100, 321
HaeIII	GGCC	3 cut(s)	24, 231, 276
Hin1II	CATG	3 cut(s)	70, 230, 374
HindIII	AAGCTT	1 cut(s)	126
HphI	GGTGA	1 cut(s)	166
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	2 cut(s)	121, 281
Hpy188III	TCNNGA	2 cut(s)	67, 94
Hpy8I	GTNNAC	1 cut(s)	244
HpyCH4V	TGCA	6 cut(s)	45, 134, 323, 329, 367, 374
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	1 cut(s)	60
Hsp92II	CATG	3 cut(s)	70, 230, 374
KflI	GGGWCCC	1 cut(s)	292
LmnI	GCTCC	1 cut(s)	317
LpnPI	CCDG	5 cut(s)	38, 274, 301, 309, 333
Lsp1109I	GCAGC	1 cut(s)	307
MaeIII	GTNAC	2 cut(s)	145, 283
MbiI	CCGCTC	1 cut(s)	99
MboII	GAAGA	1 cut(s)	134
MlsI	TGGCCA	2 cut(s)	24, 231
MluNI	TGGCCA	2 cut(s)	24, 231
MnlI	CCTC	4 cut(s)	4, 55, 200, 287
Mox20I	TGGCCA	2 cut(s)	24, 231
Mph1103I	ATGCAT	1 cut(s)	376
MscI	TGGCCA	2 cut(s)	24, 231
MseI	TTAA	2 cut(s)	216, 306
MslI	CAYNNNNRTG	1 cut(s)	237
Msp20I	TGGCCA	2 cut(s)	24, 231
MspA1I	CMGCKG	1 cut(s)	59
MspR9I	CCNGG	1 cut(s)	289
Mva1269I	GAATGC	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	1 cut(s)	326
NdeI	CATATG	1 cut(s)	358
NlaIII	CATG	3 cut(s)	70, 230, 374
NlaIV	GGNNCC	2 cut(s)	293, 294
NsiI	ATGCAT	1 cut(s)	376
PagI	TCATGA	1 cut(s)	66
PctI	GAATGC	1 cut(s)	351
PkrI	GCNGC	2 cut(s)	101, 322
PpuMI	RGGWCCY	1 cut(s)	292
PshBI	ATTAAT	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	292
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	293, 294
PspPI	GGNCC	1 cut(s)	292
PspPPI	RGGWCCY	1 cut(s)	292
PsrI	GAACNNNNNNTAC	2 cut(s)	62, 94
PstI	CTGCAG	1 cut(s)	136
PvuII	CAGCTG	1 cut(s)	59
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	2 cut(s)	216, 306
SatI	GCNGC	2 cut(s)	100, 321
Sau96I	GGNCC	1 cut(s)	292
ScaI	AGTACT	1 cut(s)	77
ScrFI	CCNGG	1 cut(s)	289
SetI	ASST	4 cut(s)	61, 66, 130, 322
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	94
SmoI	CTYRAG	1 cut(s)	94
SsiI	CCGC	2 cut(s)	99, 102
StyD4I	CCNGG	1 cut(s)	287
TatI	WGTACW	1 cut(s)	75
TauI	GCSGC	1 cut(s)	102
Tru1I	TTAA	2 cut(s)	216, 306
Tru9I	TTAA	2 cut(s)	216, 306
TscAI	CASTG	1 cut(s)	52
TseI	GCWGC	1 cut(s)	320
TspDTI	ATGAA	2 cut(s)	83, 215
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	292
VspI	ATTAAT	1 cut(s)	216
XmiI	GTMKAC	1 cut(s)	243
ZrmI	AGTACT	1 cut(s)	77
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.