Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011440

Physical Location & Seq

Genomic Coordinates Reverse (-)

3607631 .. 3610616

Gene Structure 2986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G10840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCAACCATGGCTAGGTCGTTTCTGCAGGCGATATCGAAGGATGAGGCGGTGGCTCCTCCGCTTAGAGTTGTTCAGATCGAAGGACTGGCTGTACTAAAGATAATCAAACACTGCAAGGAGTTTTCACCGACCCTTGTCACTGGACAGCTTCTTGGACTTGATGTTGGTAGCGTCCTCGAAGTTACCAATTGTTTTCCTTTCCCGGTCAGGGATGATGATGAAGAAATTGAAGCTGATGGTGCTAATTATCAGCTTGAGATGATGAGATGTCTGAGGGAGGTTAATGTTGACAACAACACTGTTGGCTGGTATCAATCTACAGTTCTTGGTTCGTATCAGACTGTGGAACTGATTGAGACCTTCATGAATTACCAGGAGAATATCAAGAGGTGTGTGTGCATCATATATGATCCCTCTAAAGCTGATCTAGGCGTCTTAGCTTTGAAGGCTTTGAAGCTTTCAGATTCCTTTATGGAGTTGTACCGAGGTGGAAACTTTACTGGCGAGAAGTTGAGAGAGAAAAATTTCTCCTGGATGGATATTTTTGAGGAAATACCTATCAAGGTTTCAAATTCTGCCCTTGTCAGTGCCTTTATGACCGAACTGGAGACTGATACACCTGTCTCACAGGGCGATTATGATCGTCTACACTCATCAACCACTCCTTTCCTTGAGAACAATATGGAGTTTTTGATTAAATGCATGGATGATTTATCTATGGAACAGCAAAAGTTCCAGTATTACTACCGGAACCTGTCTCGTCAGCAAGCACAACAGCAAGCCTGGCTCCAGAAGAGAAGAACGGAGAACATGGCTCGTAAATCAGCTGGAGAGGAGCCTTTACCAGAAGAGGATCCTTCAAACCCAATCTTTAAGGCGATCCCTGAACCATCTAGGCTAGAGAGTTTCCTCATCACAAACCAAGTCTCAAACTTCTGTGGCCAAATCAATGGAGTGGCTGGCCAGAACTTCAGCAGGCTTTACCTGACCAAAGCATTGCACGACAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006417 GO:0006446 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0033993 GO:0034248 GO:0034250 GO:0034284 GO:0034285 GO:0034286 GO:0042221 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045948 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:1901700 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 ko03013 ko05162 map00906 map01100 map01110 map03013 map05162

Pfam Domains

Protein Families

JAB

Protein Analysis

337

Amino Acids

38.37

Weight (kDa)

4.83

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	23 - 127	2.6e-16	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
eIF3h_C	PF19445	145 - 335	5.2e-53	C-terminal region of eIF3h

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10840 AT1G10840
fragaria_vesca	FvH4_4g12310 FvH4_4g12310 FvH4_4g12310
malus_domestica	MD04G1027700.v1.1
prunus_persica	Prupe.1G177100_v2.0.a1
pyrus_communis	pycom04g02430
rosa_chinensis	RchiOBHm_Chr4g0410381
rosa_laevigata	RLG00000008432
rosa_multiflora	Rmu_co8348189.1_g000001 Rmu_sc0002111.1_g000016
rosa_roxburghii	Rroxscaffold_5G00355200
rosa_rugosa	Rorug04G0102200 Rorug04G0102200
rosa_samantha	Rh4AG160400 Rh4BG159500 Rh4CG172500 Rh4DG155300
rosa_wichuraiana	Rw4G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	649
AciI	CCGC	2 cut(s)	50, 62
AclWI	GGATC	4 cut(s)	407, 851, 864, 877
AcoI	YGGCCR	2 cut(s)	943, 964
AcsI	RAATTY	2 cut(s)	526, 574
AcuI	CTGAAG	1 cut(s)	958
AcyI	GRCGYC	1 cut(s)	435
AfaI	GTAC	2 cut(s)	96, 485
AfiI	CCNNNNNNNGG	2 cut(s)	15, 211
AgsI	TTSAA	5 cut(s)	233, 448, 457, 573, 864
AjnI	CCWGG	3 cut(s)	375, 533, 785
AluBI	AGCT	7 cut(s)	151, 236, 256, 425, 443, 460, 830
AluI	AGCT	7 cut(s)	151, 236, 256, 425, 443, 460, 830
Alw26I	GTCTC	5 cut(s)	353, 605, 631, 765, 934
AlwI	GGATC	4 cut(s)	407, 851, 864, 877
AoxI	GGCC	2 cut(s)	943, 964
ApoI	RAATTY	2 cut(s)	526, 574
Asp700I	GAANNNNTTC	1 cut(s)	527
AsuC2I	CCSGG	1 cut(s)	206
AsuHPI	GGTGA	1 cut(s)	120
BaeI	ACNNNNGTAYC	2 cut(s)	609, 642
BalI	TGGCCA	2 cut(s)	945, 966
BamHI	GGATCC	1 cut(s)	856
BccI	CCATC	3 cut(s)	233, 532, 901
BciT130I	CCWGG	3 cut(s)	377, 535, 787
BcnI	CCSGG	1 cut(s)	206
BcoDI	GTCTC	5 cut(s)	353, 605, 631, 765, 934
BfaI	CTAG	4 cut(s)	15, 431, 897, 902
BfmI	CTRYAG	2 cut(s)	26, 321
Bme1390I	CCNGG	4 cut(s)	206, 377, 535, 787
BmiI	GGNNCC	5 cut(s)	57, 755, 791, 840, 858
BmrFI	CCNGG	4 cut(s)	206, 377, 535, 787
BmsI	GCATC	1 cut(s)	411
BoxI	GACNNNNGTC	1 cut(s)	137
BpmI	CTGGAG	3 cut(s)	629, 776, 852
BpuEI	CTTGAG	2 cut(s)	278, 695
BpuMI	CCSGG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	642
BsaHI	GRCGYC	1 cut(s)	435
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	9, 487
BsaWI	WCCGGW	1 cut(s)	750
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 211
Bse1I	ACTGG	5 cut(s)	93, 148, 508, 612, 739
Bse3DI	GCAATG	1 cut(s)	998
Bse8I	GATNNNNATC	1 cut(s)	642
BseBI	CCWGG	3 cut(s)	377, 535, 787
BseDI	CCNNGG	2 cut(s)	9, 487
BseGI	GGATG	4 cut(s)	49, 220, 543, 715
BseJI	GATNNNNATC	1 cut(s)	642
BseLI	CCNNNNNNNGG	2 cut(s)	15, 211
BseMI	GCAATG	1 cut(s)	998
BseMII	CTCAG	1 cut(s)	266
BseNI	ACTGG	5 cut(s)	93, 148, 508, 612, 739
BseRI	GAGGAG	2 cut(s)	48, 851
BshFI	GGCC	2 cut(s)	945, 966
BsiSI	CCGG	2 cut(s)	206, 751
BslI	CCNNNNNNNGG	2 cut(s)	15, 211
BsmAI	GTCTC	5 cut(s)	353, 605, 631, 765, 934
BsnI	GGCC	2 cut(s)	945, 966
Bso31I	GGTCTC	1 cut(s)	353
Bsp143I	GATC	6 cut(s)	78, 412, 427, 643, 856, 882
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	2 cut(s)	50, 62
BspANI	GGCC	2 cut(s)	945, 966
BspCNI	CTCAG	1 cut(s)	267
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	5 cut(s)	57, 755, 791, 840, 858
BspMAI	CTGCAG	1 cut(s)	30
BspPI	GGATC	4 cut(s)	407, 851, 864, 877
BspTNI	GGTCTC	1 cut(s)	353
BsrDI	GCAATG	1 cut(s)	998
BsrI	ACTGG	5 cut(s)	93, 148, 508, 612, 739
BssECI	CCNNGG	2 cut(s)	9, 487
BssMI	GATC	6 cut(s)	78, 412, 427, 643, 856, 882
BssNI	GRCGYC	1 cut(s)	435
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	3 cut(s)	377, 535, 787
Bst4CI	ACNGT	3 cut(s)	304, 325, 346
Bst6I	CTCTTC	2 cut(s)	791, 846
BstACI	GRCGYC	1 cut(s)	435
BstC8I	GCNNGC	5 cut(s)	30, 771, 783, 964, 980
BstDEI	CTNAG	3 cut(s)	65, 275, 439
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	4 cut(s)	49, 220, 543, 715
BstKTI	GATC	6 cut(s)	81, 415, 430, 646, 859, 885
BstMAI	GTCTC	5 cut(s)	353, 605, 631, 765, 934
BstMBI	GATC	6 cut(s)	78, 412, 427, 643, 856, 882
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 242, 449, 787
BstNI	CCWGG	3 cut(s)	377, 535, 787
BstPAI	GACNNNNGTC	1 cut(s)	137
BstSCI	CCNGG	4 cut(s)	204, 375, 533, 785
BstSFI	CTRYAG	2 cut(s)	26, 321
BstX2I	RGATCY	1 cut(s)	856
BstXI	CCANNNNNNTGG	1 cut(s)	953
BstYI	RGATCY	1 cut(s)	856
BsuRI	GGCC	2 cut(s)	945, 966
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	4 cut(s)	49, 220, 543, 715
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	4 cut(s)	112, 141, 300, 595
Cac8I	GCNNGC	5 cut(s)	30, 771, 783, 964, 980
CciI	TCATGA	1 cut(s)	366
CseI	GACGC	2 cut(s)	163, 424
Csp6I	GTAC	2 cut(s)	95, 484
CviAII	CATG	4 cut(s)	10, 367, 706, 814
CviQI	GTAC	2 cut(s)	95, 484
DdeI	CTNAG	3 cut(s)	65, 275, 439
DpnI	GATC	6 cut(s)	80, 414, 429, 645, 858, 884
DpnII	GATC	6 cut(s)	78, 412, 427, 643, 856, 882
EaeI	YGGCCR	2 cut(s)	943, 964
Eam1104I	CTCTTC	2 cut(s)	791, 846
EarI	CTCTTC	2 cut(s)	791, 846
Eco130I	CCWWGG	1 cut(s)	9
Eco31I	GGTCTC	1 cut(s)	353
Eco32I	GATATC	1 cut(s)	36
Eco57I	CTGAAG	1 cut(s)	958
EcoRII	CCWGG	3 cut(s)	375, 533, 785
EcoRV	GATATC	1 cut(s)	36
EcoT14I	CCWWGG	1 cut(s)	9
EcoT22I	ATGCAT	1 cut(s)	707
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	4 cut(s)	13, 370, 709, 817
FatI	CATG	4 cut(s)	9, 366, 705, 813
FblI	GTMKAC	1 cut(s)	649
FokI	GGATG	4 cut(s)	56, 227, 550, 722
FspBI	CTAG	4 cut(s)	15, 431, 897, 902
GsuI	CTGGAG	3 cut(s)	629, 776, 852
HaeIII	GGCC	2 cut(s)	945, 966
HapII	CCGG	2 cut(s)	206, 751
HgaI	GACGC	2 cut(s)	163, 424
Hin1I	GRCGYC	1 cut(s)	435
Hin1II	CATG	4 cut(s)	13, 370, 709, 817
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	1 cut(s)	467
HpaII	CCGG	2 cut(s)	206, 751
HphI	GGTGA	1 cut(s)	120
Hpy166II	GTNNAC	2 cut(s)	292, 650
Hpy188I	TCNGA	4 cut(s)	78, 276, 342, 466
Hpy188III	TCNNGA	3 cut(s)	367, 388, 793
Hpy8I	GTNNAC	2 cut(s)	292, 650
HpyAV	CCTTC	5 cut(s)	34, 77, 373, 442, 870
HpyCH4III	ACNGT	3 cut(s)	304, 325, 346
HpyCH4V	TGCA	5 cut(s)	28, 117, 402, 705, 1003
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 242, 449, 787
HpyF3I	CTNAG	3 cut(s)	65, 275, 439
Hsp92I	GRCGYC	1 cut(s)	435
Hsp92II	CATG	4 cut(s)	13, 370, 709, 817
Kzo9I	GATC	6 cut(s)	78, 412, 427, 643, 856, 882
LmnI	GCTCC	3 cut(s)	61, 795, 838
LweI	GCATC	1 cut(s)	411
MaeI	CTAG	4 cut(s)	15, 431, 897, 902
MaeIII	GTNAC	2 cut(s)	139, 184
MalI	GATC	6 cut(s)	80, 414, 429, 645, 858, 884
MboI	GATC	6 cut(s)	78, 412, 427, 643, 856, 882
MboII	GAAGA	4 cut(s)	236, 808, 813, 863
MfeI	CAATTG	1 cut(s)	190
MflI	RGATCY	1 cut(s)	856
MlsI	TGGCCA	2 cut(s)	945, 966
MluCI	AATT	6 cut(s)	190, 228, 247, 370, 526, 574
MluNI	TGGCCA	2 cut(s)	945, 966
Mox20I	TGGCCA	2 cut(s)	945, 966
Mph1103I	ATGCAT	1 cut(s)	707
MroXI	GAANNNNTTC	1 cut(s)	527
MscI	TGGCCA	2 cut(s)	945, 966
MseI	TTAA	3 cut(s)	285, 699, 876
Msp20I	TGGCCA	2 cut(s)	945, 966
MspA1I	CMGCKG	1 cut(s)	830
MspI	CCGG	2 cut(s)	206, 751
MspR9I	CCNGG	4 cut(s)	206, 377, 535, 787
MunI	CAATTG	1 cut(s)	190
MvaI	CCWGG	3 cut(s)	377, 535, 787
MwoI	GCNNNNNNNGC	4 cut(s)	11, 242, 449, 787
NciI	CCSGG	1 cut(s)	206
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	6 cut(s)	78, 412, 427, 643, 856, 882
NlaIII	CATG	4 cut(s)	13, 370, 709, 817
NlaIV	GGNNCC	5 cut(s)	57, 755, 791, 840, 858
NmuCI	GTSAC	1 cut(s)	139
NsiI	ATGCAT	1 cut(s)	707
PagI	TCATGA	1 cut(s)	366
PdmI	GAANNNNTTC	1 cut(s)	527
PfeI	GAWTC	1 cut(s)	467
PfoI	TCCNGGA	1 cut(s)	533
PshAI	GACNNNNGTC	1 cut(s)	137
Psp6I	CCWGG	3 cut(s)	375, 533, 785
PspGI	CCWGG	3 cut(s)	375, 533, 785
PspN4I	GGNNCC	5 cut(s)	57, 755, 791, 840, 858
PstI	CTGCAG	1 cut(s)	30
PsuI	RGATCY	1 cut(s)	856
PvuII	CAGCTG	1 cut(s)	830
RsaI	GTAC	2 cut(s)	96, 485
RsaNI	GTAC	2 cut(s)	95, 484
SaqAI	TTAA	3 cut(s)	285, 699, 876
Sau3AI	GATC	6 cut(s)	78, 412, 427, 643, 856, 882
ScrFI	CCNGG	4 cut(s)	206, 377, 535, 787
SfaNI	GCATC	1 cut(s)	411
SfcI	CTRYAG	2 cut(s)	26, 321
SmlI	CTYRAG	2 cut(s)	257, 674
SmoI	CTYRAG	2 cut(s)	257, 674
Sse9I	AATT	6 cut(s)	190, 228, 247, 370, 526, 574
SsiI	CCGC	2 cut(s)	50, 62
SspMI	CTAG	4 cut(s)	15, 431, 897, 902
StyD4I	CCNGG	4 cut(s)	204, 375, 533, 785
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	3 cut(s)	304, 325, 346
TaqI	TCGA	3 cut(s)	38, 81, 180
TaqII	GACCGA	1 cut(s)	617
TasI	AATT	6 cut(s)	190, 228, 247, 370, 526, 574
TatI	WGTACW	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	3 cut(s)	285, 699, 876
Tru9I	TTAA	3 cut(s)	285, 699, 876
TscAI	CASTG	4 cut(s)	119, 148, 307, 595
TseFI	GTSAC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	139
TspDTI	ATGAA	3 cut(s)	237, 355, 383
TspGWI	ACGGA	1 cut(s)	821
TspRI	CASTG	4 cut(s)	119, 148, 307, 595
XapI	RAATTY	2 cut(s)	526, 574
XmiI	GTMKAC	1 cut(s)	649
XmnI	GAANNNNTTC	1 cut(s)	527
XspI	CTAG	4 cut(s)	15, 431, 897, 902
Zsp2I	ATGCAT	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.