Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0011440

Physical Location & Seq

Genomic Coordinates Forward (+)

31257649 .. 31264014

Gene Structure 6366 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G013370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCGGCGAACAGTTGCTGCTACAGAAGAGGTTGCTCCCCTCTCAGAGTTGTTCAGATCGAAGGACTGGTTATCTTGAAGATAATCAAACACTGCAAGGAGTTTGCACCGGCTCTGGTCACAGGCCAACTTCTTGGCTTGGATGTTGGCAGTGTTCTTGAAGTCACTAATTGTTTCCCCTTCCCGATTAGGGAGGAGGATGAAGAGATTGAAGCTGATGGTGCCAATTACCAGCTCGAGATGATGAGATGTTTGCGAGAGGTGAATGTTGACAATAACACTGTTGGATGGTACCAATCCACATTGTTGGGTTCTTTTCAAACAGTGGAGTTGATTGAGACATTCATGAACTACCAGGAAAATATTAGACGGTGTGTGTGCATCATTTATGATCCATTGAAATCCAATCAGGGAGTCTTAGCACTGAAGGCATTGAAGCTTTCTGATTCATTCATGGAGCTCTACCGCAGTAACAATTTTACAGGGGAGAAGTTGAGGGAGAAAAACCTTTCATGGGTGGATATCTTTGAGGAAATACCTATCAAAGTTTCAAACTCTGCACTTATTAGTGCATTTATGACGGAGTTGGAAGCTGATACACCTGTTATCCAGTGTGATTATGATCGTCTGCAATTATCAACTAGTCCATTTCTAGAGAGGAATATGGAATTTCTTATCGAGTGCATGGACGATTTGTCAATGGAACAGCAGAAGTTCCAATACTATTACAGAAACGTGTCACGCCAGCAAGCCCAACAGCAAGCATGGCTTCAAAAGAGAAGGACTGAGAACATGGGTCGGAAGGCTGCCGGAGAAGAACCGCTTCCTGAAGAGGATCCTTCAAACCCCATTTTCAAGCCACTCCCCGAGCCTTCACGGTTGGACAGCTTTCTGATAACAAATCAAATCTCAAACTACTGCAACCAAATTAATGGGGTTGCCGGACAGAGCTTCAGCAGATTATATTTGACGAAGGCTTTGCATGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006417 GO:0006446 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0033993 GO:0034248 GO:0034250 GO:0034284 GO:0034285 GO:0034286 GO:0042221 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045948 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:1901700 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 ko03013 ko05162 map00906 map01100 map01110 map03013 map05162

Pfam Domains

Protein Families

JAB

Protein Analysis

330

Amino Acids

37.94

Weight (kDa)

4.88

Isoelectric Point (pI)

52.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	15 - 120	1.2e-16	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
eIF3h_C	PF19445	136 - 329	4.5e-58	C-terminal region of eIF3h

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10840 AT1G10840
fragaria_vesca	FvH4_4g12310 FvH4_4g12310 FvH4_4g12310
malus_domestica	MD04G1027700.v1.1
prunus_persica	Prupe.1G177100_v2.0.a1
pyrus_communis	pycom04g02430
rosa_chinensis	RchiOBHm_Chr4g0410381
rosa_laevigata	RLG00000008432
rosa_multiflora	Rmu_co8348189.1_g000001 Rmu_sc0002111.1_g000016
rosa_roxburghii	Rroxscaffold_5G00355200
rosa_rugosa	Rorug04G0102200 Rorug04G0102200
rosa_samantha	Rh4AG160400 Rh4BG159500 Rh4CG172500 Rh4DG155300
rosa_wichuraiana	Rw4G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	291
AccB1I	GGYRCC	2 cut(s)	221, 291
AciI	CCGC	3 cut(s)	5, 466, 821
AclWI	GGATC	3 cut(s)	386, 830, 843
AcsI	RAATTY	1 cut(s)	668
AcuI	CTGAAG	3 cut(s)	446, 849, 937
AfaI	GTAC	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	190, 514
AflIII	ACRYGT	1 cut(s)	735
AhdI	GACNNNNNGTC	1 cut(s)	694
AhlI	ACTAGT	1 cut(s)	641
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	7 cut(s)	215, 235, 439, 460, 593, 888, 951
AluI	AGCT	7 cut(s)	215, 235, 439, 460, 593, 888, 951
Alw21I	GWGCWC	1 cut(s)	462
Alw26I	GTCTC	1 cut(s)	332
AlwI	GGATC	3 cut(s)	386, 830, 843
AlwNI	CAGNNNCTG	1 cut(s)	18
Ama87I	CYCGRG	2 cut(s)	236, 866
AoxI	GGCC	1 cut(s)	124
ApeKI	GCWGC	2 cut(s)	18, 806
ApoI	RAATTY	1 cut(s)	668
ArsI	GACNNNNNNTTYG	2 cut(s)	961, 993
AseI	ATTAAT	1 cut(s)	930
Asp700I	GAANNNNTTC	1 cut(s)	822
Asp718I	GGTACC	1 cut(s)	291
AsuHPI	GGTGA	1 cut(s)	274
AvaI	CYCGRG	2 cut(s)	236, 866
BaeI	ACNNNNGTAYC	2 cut(s)	588, 621
BamHI	GGATCC	1 cut(s)	835
BanI	GGYRCC	2 cut(s)	221, 291
BanII	GRGCYC	1 cut(s)	462
BarI	GAAGNNNNNNTAC	2 cut(s)	704, 736
Bbv12I	GWGCWC	1 cut(s)	462
BbvI	GCAGC	2 cut(s)	5, 793
BccI	CCATC	2 cut(s)	212, 282
BcgI	CGANNNNNNTGC	1 cut(s)	961
BciT130I	CCWGG	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	332
BcuI	ACTAGT	1 cut(s)	641
BfaI	CTAG	2 cut(s)	642, 653
BfmI	CTRYAG	1 cut(s)	22
BisI	GCNGC	3 cut(s)	6, 19, 807
BlsI	GCNGC	3 cut(s)	7, 20, 808
Bme1390I	CCNGG	1 cut(s)	356
BmeRI	GACNNNNNGTC	1 cut(s)	694
BmeT110I	CYCGRG	2 cut(s)	236, 866
BmiI	GGNNCC	3 cut(s)	223, 293, 837
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	1 cut(s)	390
BsaBI	GATNNNNATC	1 cut(s)	621
Bsc4I	CCNNNNNNNGG	2 cut(s)	190, 514
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	2 cut(s)	72, 610
Bse8I	GATNNNNATC	1 cut(s)	621
BseBI	CCWGG	1 cut(s)	356
BseGI	GGATG	3 cut(s)	148, 205, 293
BseJI	GATNNNNATC	1 cut(s)	621
BseLI	CCNNNNNNNGG	2 cut(s)	190, 514
BseMII	CTCAG	2 cut(s)	58, 777
BseNI	ACTGG	2 cut(s)	72, 610
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	2 cut(s)	5, 793
BsgI	GTGCAG	1 cut(s)	543
BshFI	GGCC	1 cut(s)	126
BshNI	GGYRCC	2 cut(s)	221, 291
BsiHKAI	GWGCWC	1 cut(s)	462
BsiHKCI	CYCGRG	2 cut(s)	236, 866
BsiSI	CCGG	3 cut(s)	110, 810, 942
BslI	CCNNNNNNNGG	2 cut(s)	190, 514
BsmAI	GTCTC	1 cut(s)	332
BsnI	GGCC	1 cut(s)	126
BsoBI	CYCGRG	2 cut(s)	236, 866
Bsp1286I	GDGCHC	1 cut(s)	462
Bsp143I	GATC	4 cut(s)	57, 391, 622, 835
BspACI	CCGC	3 cut(s)	5, 466, 821
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	2 cut(s)	57, 778
BspHI	TCATGA	1 cut(s)	345
BspLI	GGNNCC	3 cut(s)	223, 293, 837
BspPI	GGATC	3 cut(s)	386, 830, 843
BspT107I	GGYRCC	2 cut(s)	221, 291
BsrFI	RCCGGY	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	72, 610
BssAI	RCCGGY	1 cut(s)	109
BssMI	GATC	4 cut(s)	57, 391, 622, 835
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	5 cut(s)	14, 283, 325, 372, 879
Bst6I	CTCTTC	3 cut(s)	22, 198, 825
BstC8I	GCNNGC	3 cut(s)	746, 750, 762
BstDEI	CTNAG	3 cut(s)	44, 418, 786
BstF5I	GGATG	3 cut(s)	148, 205, 293
BstKTI	GATC	4 cut(s)	60, 394, 625, 838
BstMAI	GTCTC	1 cut(s)	332
BstMBI	GATC	4 cut(s)	57, 391, 622, 835
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 428, 766
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstSFI	CTRYAG	1 cut(s)	22
BstV1I	GCAGC	2 cut(s)	5, 793
BstX2I	RGATCY	1 cut(s)	835
BstXI	CCANNNNNNTGG	3 cut(s)	134, 307, 932
BstYI	RGATCY	1 cut(s)	835
BsuRI	GGCC	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	148, 205, 293
BtsI	GCAGTG	2 cut(s)	91, 157
BtsIMutI	CAGTG	6 cut(s)	91, 157, 279, 330, 422, 617
Cac8I	GCNNGC	3 cut(s)	746, 750, 762
CaiI	CAGNNNCTG	1 cut(s)	18
CciI	TCATGA	1 cut(s)	345
Cfr10I	RCCGGY	1 cut(s)	109
Csp6I	GTAC	1 cut(s)	292
CviAII	CATG	7 cut(s)	346, 454, 513, 685, 765, 793, 983
CviQI	GTAC	1 cut(s)	292
DdeI	CTNAG	3 cut(s)	44, 418, 786
DpnI	GATC	4 cut(s)	59, 393, 624, 837
DpnII	GATC	4 cut(s)	57, 391, 622, 835
DriI	GACNNNNNGTC	1 cut(s)	694
Eam1104I	CTCTTC	3 cut(s)	22, 198, 825
Eam1105I	GACNNNNNGTC	1 cut(s)	694
EarI	CTCTTC	3 cut(s)	22, 198, 825
Ecl136II	GAGCTC	1 cut(s)	460
Eco24I	GRGCYC	1 cut(s)	462
Eco32I	GATATC	1 cut(s)	523
Eco53kI	GAGCTC	1 cut(s)	460
Eco57I	CTGAAG	3 cut(s)	446, 849, 937
Eco88I	CYCGRG	2 cut(s)	236, 866
EcoICRI	GAGCTC	1 cut(s)	460
EcoRII	CCWGG	1 cut(s)	354
EcoRV	GATATC	1 cut(s)	523
EcoT38I	GRGCYC	1 cut(s)	462
FaeI	CATG	7 cut(s)	349, 457, 516, 688, 768, 796, 986
FalI	AAGNNNNNCTT	4 cut(s)	753, 785, 807, 839
FatI	CATG	7 cut(s)	345, 453, 512, 684, 764, 792, 982
Fnu4HI	GCNGC	3 cut(s)	6, 19, 807
FokI	GGATG	3 cut(s)	155, 212, 300
FriOI	GRGCYC	1 cut(s)	462
Fsp4HI	GCNGC	3 cut(s)	6, 19, 807
FspBI	CTAG	2 cut(s)	642, 653
GluI	GCNGC	3 cut(s)	6, 19, 807
HaeIII	GGCC	1 cut(s)	126
HapII	CCGG	3 cut(s)	110, 810, 942
Hin1II	CATG	7 cut(s)	349, 457, 516, 688, 768, 796, 986
HincII	GTYRAC	1 cut(s)	271
HindII	GTYRAC	1 cut(s)	271
HindIII	AAGCTT	1 cut(s)	437
HinfI	GANTC	2 cut(s)	414, 446
HpaII	CCGG	3 cut(s)	110, 810, 942
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	271
Hpy188I	TCNGA	5 cut(s)	47, 57, 445, 801, 894
Hpy188III	TCNNGA	7 cut(s)	76, 158, 184, 238, 346, 653, 827
Hpy8I	GTNNAC	1 cut(s)	271
HpyAV	CCTTC	8 cut(s)	56, 190, 421, 774, 796, 849, 882, 967
HpyCH4III	ACNGT	5 cut(s)	14, 283, 325, 372, 879
HpyCH4IV	ACGT	1 cut(s)	735
HpyCH4V	TGCA	9 cut(s)	96, 107, 381, 560, 572, 631, 684, 921, 982
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 428, 766
HpyF3I	CTNAG	3 cut(s)	44, 418, 786
HpySE526I	ACGT	1 cut(s)	735
Hsp92II	CATG	7 cut(s)	349, 457, 516, 688, 768, 796, 986
KpnI	GGTACC	1 cut(s)	295
Kzo9I	GATC	4 cut(s)	57, 391, 622, 835
LmnI	GCTCC	2 cut(s)	41, 457
Lsp1109I	GCAGC	2 cut(s)	5, 793
LweI	GCATC	1 cut(s)	390
MaeI	CTAG	2 cut(s)	642, 653
MaeII	ACGT	1 cut(s)	735
MaeIII	GTNAC	4 cut(s)	118, 163, 470, 738
MalI	GATC	4 cut(s)	59, 393, 624, 837
MboI	GATC	4 cut(s)	57, 391, 622, 835
MboII	GAAGA	5 cut(s)	39, 91, 215, 827, 842
MflI	RGATCY	1 cut(s)	835
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	6 cut(s)	169, 226, 475, 632, 668, 927
MlyI	GAGTC	1 cut(s)	423
MmeI	TCCRAC	4 cut(s)	265, 567, 779, 861
MnlI	CCTC	9 cut(s)	23, 51, 187, 190, 253, 489, 523, 651, 826
MroXI	GAANNNNTTC	1 cut(s)	822
MseI	TTAA	1 cut(s)	930
MspI	CCGG	3 cut(s)	110, 810, 942
MspR9I	CCNGG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	356
MwoI	GCNNNNNNNGC	3 cut(s)	221, 428, 766
NdeII	GATC	4 cut(s)	57, 391, 622, 835
NlaIII	CATG	7 cut(s)	349, 457, 516, 688, 768, 796, 986
NlaIV	GGNNCC	3 cut(s)	223, 293, 837
NmuCI	GTSAC	3 cut(s)	118, 163, 738
PaeR7I	CTCGAG	1 cut(s)	236
PagI	TCATGA	1 cut(s)	345
PdmI	GAANNNNTTC	1 cut(s)	822
PfeI	GAWTC	1 cut(s)	446
PkrI	GCNGC	3 cut(s)	7, 20, 808
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
PshBI	ATTAAT	1 cut(s)	930
Psp124BI	GAGCTC	1 cut(s)	462
Psp6I	CCWGG	1 cut(s)	354
PspGI	CCWGG	1 cut(s)	354
PspN4I	GGNNCC	3 cut(s)	223, 293, 837
PstNI	CAGNNNCTG	1 cut(s)	18
PsuI	RGATCY	1 cut(s)	835
RsaI	GTAC	1 cut(s)	293
RsaNI	GTAC	1 cut(s)	292
SacI	GAGCTC	1 cut(s)	462
SaqAI	TTAA	1 cut(s)	930
SatI	GCNGC	3 cut(s)	6, 19, 807
Sau3AI	GATC	4 cut(s)	57, 391, 622, 835
SchI	GAGTC	1 cut(s)	423
ScrFI	CCNGG	1 cut(s)	356
SduI	GDGCHC	1 cut(s)	462
SfaNI	GCATC	1 cut(s)	390
SfcI	CTRYAG	1 cut(s)	22
Sfr274I	CTCGAG	1 cut(s)	236
SlaI	CTCGAG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SpeI	ACTAGT	1 cut(s)	641
Sse9I	AATT	6 cut(s)	169, 226, 475, 632, 668, 927
SsiI	CCGC	3 cut(s)	5, 466, 821
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	2 cut(s)	642, 653
SstI	GAGCTC	1 cut(s)	462
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	5 cut(s)	14, 283, 325, 372, 879
TaiI	ACGT	1 cut(s)	738
TaqI	TCGA	3 cut(s)	60, 237, 678
TasI	AATT	6 cut(s)	169, 226, 475, 632, 668, 927
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	1 cut(s)	930
Tru9I	TTAA	1 cut(s)	930
TscAI	CASTG	6 cut(s)	98, 157, 286, 330, 429, 617
TseFI	GTSAC	3 cut(s)	118, 163, 738
TseI	GCWGC	2 cut(s)	18, 806
Tsp45I	GTSAC	3 cut(s)	118, 163, 738
TspDTI	ATGAA	6 cut(s)	216, 334, 362, 438, 442, 501
TspGWI	ACGGA	1 cut(s)	596
TspRI	CASTG	6 cut(s)	98, 157, 286, 330, 429, 617
VspI	ATTAAT	1 cut(s)	930
XapI	RAATTY	1 cut(s)	668
XbaI	TCTAGA	1 cut(s)	652
XhoI	CTCGAG	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	822
XspI	CTAG	2 cut(s)	642, 653

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.