Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0011440

Physical Location & Seq

Genomic Coordinates Reverse (-)

3164475 .. 3169389

Gene Structure 4915 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1027700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCGACCCCGGGAGCAAGATCGTTTCTTCAGGTGGCGGCGACCGAAGAGGTTGCTTCTCCTCTCAGAGTCGTTCAGATCGAGGGACTGGTTATCTTGAAGATAATCAAACACTGCAAGGAGTTTTCGCCGGCTTTGGTCACGGGGCAACTTCTTGGGTTAGATGTTGGCAGCGTTCTCGAAGTTACTAATTGTTTCCCCTTCCCGGTCAGAGAGGAGGATGAAGAAATTGAAGCTGATGGCGCCAATTACCAGCTTGAGATGATGAGATGTTTGAGAGAGGTTAATGTTGACAACAACACTGTTGGATGGTACCAATCTACATTGTTGGGTTCTTTTCAAACAGTGGAGCTGATCGAGACGTTCATGAACTACCAGGAAAATATCAGACGTTGTGTGTGCATAATTTATGATCCATTGAAGTCCAATCAAGGCGTTTTAGCACTCAAGGCACTGAAGCTTTCCGATTCATTCATGGATCTCTACCGCACTAACAATTTTACAGGAGAGAAGTTGAGGGAGAAAAACCTATCATGGGTGGATATTTTTGAAGAAATACCTATCAAAGTTTCGAATTCTGCACTTATCAGTGCCTTTATGACTGAGCTGGAAGCTGATACACCTGTTGTCCAGTGTGATTACGACCGTCTGCAATTATCCACAAGCCCATTTCTGGAGAGGAATATGGAATTTCTCATTGAATGCATGGATGATTTGTCAATGGAACAGCAGAAGTTCCAATACTATTACAGGAACCTGTCACGTCAGCAAGCCCAACAGCAAGCATGGATCCAAAAGAGAAGGTTGGAGAATATGGCACGAAAGGCCGCAGGAGATGAACCTCTACCTGAGGAGGATCCTTCAAACCCTGTTTTCAAGCCACTACCCGAGCCTTCACGTTTGGATAGCTTTCTCATAACCAATCAGATCTCAAACTACTGCAACCAAATTAATGGGGTTACTGGCCAGAGCTTCAGCAGATTGTATTTGACAAAAGCGTTGCACGAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006417 GO:0006446 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0033993 GO:0034248 GO:0034250 GO:0034284 GO:0034285 GO:0034286 GO:0042221 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045948 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:1901700 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 ko03013 ko05162 map00906 map01100 map01110 map03013 map05162

Pfam Domains

Protein Families

JAB

Protein Analysis

338

Amino Acids

38.59

Weight (kDa)

4.75

Isoelectric Point (pI)

50.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	22 - 127	5.5e-17	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
eIF3h_C	PF19445	143 - 336	1.3e-57	C-terminal region of eIF3h

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10840 AT1G10840
fragaria_vesca	FvH4_4g12310 FvH4_4g12310 FvH4_4g12310
malus_domestica	MD04G1027700.v1.1
prunus_persica	Prupe.1G177100_v2.0.a1
pyrus_communis	pycom04g02430
rosa_chinensis	RchiOBHm_Chr4g0410381
rosa_laevigata	RLG00000008432
rosa_multiflora	Rmu_co8348189.1_g000001 Rmu_sc0002111.1_g000016
rosa_roxburghii	Rroxscaffold_5G00355200
rosa_rugosa	Rorug04G0102200 Rorug04G0102200
rosa_samantha	Rh4AG160400 Rh4BG159500 Rh4CG172500 Rh4DG155300
rosa_wichuraiana	Rw4G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	312
AccB1I	GGYRCC	2 cut(s)	242, 312
AciI	CCGC	3 cut(s)	38, 487, 828
AclWI	GGATC	6 cut(s)	407, 486, 784, 797, 851, 864
AcoI	YGGCCR	1 cut(s)	964
AcsI	RAATTY	2 cut(s)	574, 689
AcuI	CTGAAG	3 cut(s)	14, 476, 958
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	1 cut(s)	314
AfiI	CCNNNNNNNGG	3 cut(s)	205, 535, 673
AgsI	TTSAA	8 cut(s)	100, 233, 341, 421, 551, 701, 864, 877
AjiI	CACGTC	1 cut(s)	764
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	8 cut(s)	236, 256, 352, 460, 607, 614, 909, 972
AluI	AGCT	8 cut(s)	236, 256, 352, 460, 607, 614, 909, 972
Alw26I	GTCTC	1 cut(s)	353
AlwI	GGATC	6 cut(s)	407, 486, 784, 797, 851, 864
Ama87I	CYCGRG	2 cut(s)	10, 887
AoxI	GGCC	2 cut(s)	825, 964
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	2 cut(s)	574, 689
AseI	ATTAAT	1 cut(s)	951
Asp718I	GGTACC	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	245
AsuC2I	CCSGG	3 cut(s)	11, 12, 206
AsuII	TTCGAA	1 cut(s)	572
AvaI	CYCGRG	2 cut(s)	10, 887
AxyI	CCTNAGG	1 cut(s)	849
BaeI	ACNNNNGTAYC	2 cut(s)	609, 642
BalI	TGGCCA	1 cut(s)	966
BamHI	GGATCC	2 cut(s)	789, 856
BanI	GGYRCC	2 cut(s)	242, 312
BarI	GAAGNNNNNNTAC	2 cut(s)	725, 757
BauI	CACGAG	1 cut(s)	1004
BbvI	GCAGC	1 cut(s)	183
BccI	CCATC	2 cut(s)	233, 303
BcgI	CGANNNNNNTGC	4 cut(s)	35, 69, 160, 194
BciT130I	CCWGG	1 cut(s)	377
BcnI	CCSGG	3 cut(s)	11, 12, 206
BcoDI	GTCTC	1 cut(s)	353
BfoI	RGCGCY	1 cut(s)	246
BglII	AGATCT	1 cut(s)	927
BisI	GCNGC	3 cut(s)	39, 172, 828
BlsI	GCNGC	3 cut(s)	40, 173, 829
Bme1390I	CCNGG	4 cut(s)	11, 12, 206, 377
BmeT110I	CYCGRG	2 cut(s)	10, 887
BmgBI	CACGTC	1 cut(s)	764
BmiI	GGNNCC	5 cut(s)	244, 314, 755, 791, 858
BmrFI	CCNGG	4 cut(s)	11, 12, 206, 377
BpmI	CTGGAG	1 cut(s)	695
Bpu14I	TTCGAA	1 cut(s)	572
BpuEI	CTTGAG	2 cut(s)	278, 431
BpuMI	CCSGG	3 cut(s)	11, 12, 206
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	2 cut(s)	9, 10
Bsc4I	CCNNNNNNNGG	3 cut(s)	205, 535, 673
Bse118I	RCCGGY	1 cut(s)	130
Bse1I	ACTGG	3 cut(s)	93, 631, 967
Bse21I	CCTNAGG	1 cut(s)	849
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	2 cut(s)	9, 10
BseGI	GGATG	3 cut(s)	226, 314, 715
BseLI	CCNNNNNNNGG	3 cut(s)	205, 535, 673
BseMII	CTCAG	3 cut(s)	79, 594, 840
BseNI	ACTGG	3 cut(s)	93, 631, 967
BseRI	GAGGAG	3 cut(s)	51, 230, 866
BseXI	GCAGC	1 cut(s)	183
BsgI	GTGCAG	1 cut(s)	564
Bsh1285I	CGRYCG	2 cut(s)	45, 646
BshFI	GGCC	2 cut(s)	827, 966
BshNI	GGYRCC	2 cut(s)	242, 312
BsiEI	CGRYCG	2 cut(s)	45, 646
BsiHKCI	CYCGRG	2 cut(s)	10, 887
BsiSI	CCGG	3 cut(s)	11, 131, 206
BslFI	GGGAC	1 cut(s)	99
BslI	CCNNNNNNNGG	3 cut(s)	205, 535, 673
BsmAI	GTCTC	1 cut(s)	353
BsmBI	CGTCTC	1 cut(s)	353
BsmFI	GGGAC	1 cut(s)	99
BsmI	GAATGC	1 cut(s)	707
BsnI	GGCC	2 cut(s)	827, 966
BsoBI	CYCGRG	2 cut(s)	10, 887
Bsp119I	TTCGAA	1 cut(s)	572
Bsp143I	GATC	8 cut(s)	20, 78, 354, 412, 478, 789, 856, 927
BspACI	CCGC	3 cut(s)	38, 487, 828
BspANI	GGCC	2 cut(s)	827, 966
BspCNI	CTCAG	3 cut(s)	78, 595, 841
BspHI	TCATGA	1 cut(s)	366
BspLI	GGNNCC	5 cut(s)	244, 314, 755, 791, 858
BspPI	GGATC	6 cut(s)	407, 486, 784, 797, 851, 864
BspT104I	TTCGAA	1 cut(s)	572
BspT107I	GGYRCC	2 cut(s)	242, 312
BsrFI	RCCGGY	1 cut(s)	130
BsrI	ACTGG	3 cut(s)	93, 631, 967
BssAI	RCCGGY	1 cut(s)	130
BssECI	CCNNGG	2 cut(s)	9, 10
BssMI	GATC	8 cut(s)	20, 78, 354, 412, 478, 789, 856, 927
BssNI	GRCGYC	1 cut(s)	243
BssSI	CACGAG	1 cut(s)	1004
Bst2BI	CACGAG	1 cut(s)	1004
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	3 cut(s)	304, 346, 647
Bst6I	CTCTTC	1 cut(s)	42
BstACI	GRCGYC	1 cut(s)	243
BstBI	TTCGAA	1 cut(s)	572
BstC8I	GCNNGC	3 cut(s)	132, 771, 783
BstDEI	CTNAG	3 cut(s)	65, 603, 849
BstF5I	GGATG	3 cut(s)	226, 314, 715
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	8 cut(s)	23, 81, 357, 415, 481, 792, 859, 930
BstMAI	GTCTC	1 cut(s)	353
BstMBI	GATC	8 cut(s)	20, 78, 354, 412, 478, 789, 856, 927
BstMCI	CGRYCG	2 cut(s)	45, 646
BstMWI	GCNNNNNNNGC	3 cut(s)	242, 449, 824
BstNI	CCWGG	1 cut(s)	377
BstSCI	CCNGG	4 cut(s)	9, 10, 204, 375
BstV1I	GCAGC	1 cut(s)	183
BstX2I	RGATCY	4 cut(s)	478, 789, 856, 927
BstXI	CCANNNNNNTGG	1 cut(s)	953
BstYI	RGATCY	4 cut(s)	478, 789, 856, 927
Bsu36I	CCTNAGG	1 cut(s)	849
BsuRI	GGCC	2 cut(s)	827, 966
BtrI	CACGTC	1 cut(s)	764
BtsCI	GGATG	3 cut(s)	226, 314, 715
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	6 cut(s)	112, 300, 351, 452, 595, 638
Cac8I	GCNNGC	3 cut(s)	132, 771, 783
CciI	TCATGA	1 cut(s)	366
CfoI	GCGC	1 cut(s)	245
Cfr10I	RCCGGY	1 cut(s)	130
Cfr9I	CCCGGG	1 cut(s)	10
Csp6I	GTAC	1 cut(s)	313
CviAII	CATG	5 cut(s)	367, 475, 534, 706, 786
CviQI	GTAC	1 cut(s)	313
DdeI	CTNAG	3 cut(s)	65, 603, 849
DinI	GGCGCC	1 cut(s)	244
DpnI	GATC	8 cut(s)	22, 80, 356, 414, 480, 791, 858, 929
DpnII	GATC	8 cut(s)	20, 78, 354, 412, 478, 789, 856, 927
EaeI	YGGCCR	1 cut(s)	964
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco57I	CTGAAG	3 cut(s)	14, 476, 958
Eco81I	CCTNAGG	1 cut(s)	849
Eco88I	CYCGRG	2 cut(s)	10, 887
EcoRI	GAATTC	1 cut(s)	574
EcoRII	CCWGG	1 cut(s)	375
EcoT22I	ATGCAT	1 cut(s)	707
EgeI	GGCGCC	1 cut(s)	244
EheI	GGCGCC	1 cut(s)	244
Esp3I	CGTCTC	1 cut(s)	353
FaeI	CATG	5 cut(s)	370, 478, 537, 709, 789
FaqI	GGGAC	1 cut(s)	99
FatI	CATG	5 cut(s)	366, 474, 533, 705, 785
Fnu4HI	GCNGC	3 cut(s)	39, 172, 828
FokI	GGATG	3 cut(s)	233, 321, 722
Fsp4HI	GCNGC	3 cut(s)	39, 172, 828
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	3 cut(s)	39, 172, 828
GsuI	CTGGAG	1 cut(s)	695
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	827, 966
HapII	CCGG	3 cut(s)	11, 131, 206
HhaI	GCGC	1 cut(s)	245
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	5 cut(s)	370, 478, 537, 709, 789
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	2 cut(s)	69, 467
HpaII	CCGG	3 cut(s)	11, 131, 206
Hpy166II	GTNNAC	1 cut(s)	292
Hpy188I	TCNGA	6 cut(s)	68, 78, 212, 389, 466, 927
Hpy188III	TCNNGA	5 cut(s)	97, 179, 358, 367, 674
Hpy8I	GTNNAC	1 cut(s)	292
HpyAV	CCTTC	4 cut(s)	211, 795, 870, 903
HpyCH4III	ACNGT	3 cut(s)	304, 346, 647
HpyCH4IV	ACGT	4 cut(s)	362, 391, 763, 898
HpyCH4V	TGCA	7 cut(s)	117, 402, 581, 652, 705, 942, 1003
HpyF10VI	GCNNNNNNNGC	3 cut(s)	242, 449, 824
HpyF3I	CTNAG	3 cut(s)	65, 603, 849
HpySE526I	ACGT	4 cut(s)	362, 391, 763, 898
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	5 cut(s)	370, 478, 537, 709, 789
HspAI	GCGC	1 cut(s)	243
KasI	GGCGCC	1 cut(s)	242
KpnI	GGTACC	1 cut(s)	316
KroI	GCCGGC	1 cut(s)	130
KroNI	GCCGGC	1 cut(s)	132
Kzo9I	GATC	8 cut(s)	20, 78, 354, 412, 478, 789, 856, 927
LmnI	GCTCC	2 cut(s)	14, 349
Lsp1109I	GCAGC	1 cut(s)	183
MaeII	ACGT	4 cut(s)	362, 391, 763, 898
MaeIII	GTNAC	4 cut(s)	139, 184, 759, 958
MalI	GATC	8 cut(s)	22, 80, 356, 414, 480, 791, 858, 929
MboI	GATC	8 cut(s)	20, 78, 354, 412, 478, 789, 856, 927
MboII	GAAGA	5 cut(s)	20, 59, 112, 236, 563
MflI	RGATCY	4 cut(s)	478, 789, 856, 927
MlsI	TGGCCA	1 cut(s)	966
MluNI	TGGCCA	1 cut(s)	966
Mly113I	GGCGCC	1 cut(s)	243
MlyI	GAGTC	1 cut(s)	78
MmeI	TCCRAC	2 cut(s)	286, 786
Mox20I	TGGCCA	1 cut(s)	966
Mph1103I	ATGCAT	1 cut(s)	707
MroNI	GCCGGC	1 cut(s)	130
MscI	TGGCCA	1 cut(s)	966
MseI	TTAA	2 cut(s)	285, 951
Msp20I	TGGCCA	1 cut(s)	966
MspI	CCGG	3 cut(s)	11, 131, 206
MspR9I	CCNGG	4 cut(s)	11, 12, 206, 377
Mva1269I	GAATGC	1 cut(s)	707
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	3 cut(s)	242, 449, 824
NaeI	GCCGGC	1 cut(s)	132
NarI	GGCGCC	1 cut(s)	243
NciI	CCSGG	3 cut(s)	11, 12, 206
NdeII	GATC	8 cut(s)	20, 78, 354, 412, 478, 789, 856, 927
NgoMIV	GCCGGC	1 cut(s)	130
NlaIII	CATG	5 cut(s)	370, 478, 537, 709, 789
NlaIV	GGNNCC	5 cut(s)	244, 314, 755, 791, 858
NmuCI	GTSAC	2 cut(s)	139, 759
NsiI	ATGCAT	1 cut(s)	707
NspV	TTCGAA	1 cut(s)	572
PagI	TCATGA	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PctI	GAATGC	1 cut(s)	707
PdiI	GCCGGC	1 cut(s)	132
PfeI	GAWTC	1 cut(s)	467
PkrI	GCNGC	3 cut(s)	40, 173, 829
PleI	GAGTC	1 cut(s)	77
PluTI	GGCGCC	1 cut(s)	246
PpsI	GAGTC	1 cut(s)	77
PshBI	ATTAAT	1 cut(s)	951
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	5 cut(s)	244, 314, 755, 791, 858
PsuI	RGATCY	4 cut(s)	478, 789, 856, 927
RsaI	GTAC	1 cut(s)	314
RsaNI	GTAC	1 cut(s)	313
SaqAI	TTAA	2 cut(s)	285, 951
SatI	GCNGC	3 cut(s)	39, 172, 828
Sau3AI	GATC	8 cut(s)	20, 78, 354, 412, 478, 789, 856, 927
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	4 cut(s)	11, 12, 206, 377
SfoI	GGCGCC	1 cut(s)	244
SfuI	TTCGAA	1 cut(s)	572
SmaI	CCCGGG	1 cut(s)	12
SmlI	CTYRAG	2 cut(s)	257, 446
SmoI	CTYRAG	2 cut(s)	257, 446
SsiI	CCGC	3 cut(s)	38, 487, 828
SspDI	GGCGCC	1 cut(s)	242
StyD4I	CCNGG	4 cut(s)	9, 10, 204, 375
TaaI	ACNGT	3 cut(s)	304, 346, 647
TaiI	ACGT	4 cut(s)	365, 394, 766, 901
TaqI	TCGA	4 cut(s)	81, 180, 357, 572
TaqII	GACCGA	1 cut(s)	59
TauI	GCSGC	2 cut(s)	41, 830
TfiI	GAWTC	1 cut(s)	467
Tru1I	TTAA	2 cut(s)	285, 951
Tru9I	TTAA	2 cut(s)	285, 951
TscAI	CASTG	6 cut(s)	119, 307, 351, 459, 595, 638
TseFI	GTSAC	2 cut(s)	139, 759
TseI	GCWGC	1 cut(s)	171
Tsp45I	GTSAC	2 cut(s)	139, 759
TspDTI	ATGAA	6 cut(s)	237, 355, 383, 459, 463, 852
TspMI	CCCGGG	1 cut(s)	10
TspRI	CASTG	6 cut(s)	119, 307, 351, 459, 595, 638
VspI	ATTAAT	1 cut(s)	951
XapI	RAATTY	2 cut(s)	574, 689
XmaI	CCCGGG	1 cut(s)	10
Zsp2I	ATGCAT	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.