Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0011440

Physical Location & Seq

Genomic Coordinates Forward (+)

16015681 .. 16021382

Gene Structure 5702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g12310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGGCGGCGAACACAATGGCGAGATCCTTTCTTCAGGTTGCGGCTACAGAAGAGGCTGCTCCTCCTCTCAGAGTTGTTCAGATCGAGGGACTGGTTATTTTAAAGATAATCAAACACTGCAAGGAGTTTTCACCTAATCTGGTCACCGGGCAGCTTCTTGGATTGGATGTTGGTAGTGTTCTTGAAGTTACTAATTGTTTCCCGTTCCCGGCAAGGGTGGTGGAGGAGGATGAAGAGATTGAAGCTGAAGGTGCCAATTACCAACTTGAGATGATGAGGTGTTTGAGAGAGGTGAATGTTGACAACAACACTGTTGGATGGTACCAATCCACGTTGATGGGTGCTTATCAAACAGATGAGGTGATTCAAACATTCTTGAACTACCAGGAAAATATCAAACGATGTGTGTGCATCATTTATGATCCATTGAAATCCAATCAGGGAGTCTTAGCACTCAAGGCATTAAAGCTTTCTGATTCATTCATGGAGCTCTACCGCAGTAACAATTTTACAGGAGAGAAGCTGAGGGAGAAAAACCTTTCATGGGTGGATATCTTTGAGGAAATACCTATCAAAGTTTCAAATTCTGCACTTATTAGTGCATTTATGACGGAGTTGGAAGCTGATACACCTGTTACCCAGTGTGATTGTGATCGACTGCAATTATCAACTAGTCCATTTCTGGAGAGGAATGTGGAATTTCTTATTGAGTGCATGGATGATCTGTCTGCGGACCAGCAGAAGTTCCAATACTATTACAGAAACCTGTCACGCCAGCAAGCCCAACAACAAGCCTGGCTTCAAAAGAGAAGGACTGAGAATATGGCACGGAAGGCTGCTGGAGAAGAACCCCTTCCTGAAGAGGATCCTTCAAATCCCATTTTCAAGCCACTACCCGAGCCTTCACGGTTGGACAGCTATCTGATAACAAACCAAGTCTCAAACTACTGCAACCAAATTAATGGGGTTGCTGGACAGAGCTTCAGCAGATTATATTTGACAAAGGCTTTGCACGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006417 GO:0006446 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0033993 GO:0034248 GO:0034250 GO:0034284 GO:0034285 GO:0034286 GO:0042221 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045948 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:1901700 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 ko03013 ko05162 map00906 map01100 map01110 map03013 map05162

Pfam Domains

Protein Families

JAB

Protein Analysis

341

Amino Acids

38.75

Weight (kDa)

4.76

Isoelectric Point (pI)

50.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	24 - 130	8.2e-17	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
eIF3h_C	PF19445	146 - 339	1.8e-57	C-terminal region of eIF3h

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10840 AT1G10840
fragaria_vesca	FvH4_4g12310 FvH4_4g12310 FvH4_4g12310
malus_domestica	MD04G1027700.v1.1
prunus_persica	Prupe.1G177100_v2.0.a1
pyrus_communis	pycom04g02430
rosa_chinensis	RchiOBHm_Chr4g0410381
rosa_laevigata	RLG00000008432
rosa_multiflora	Rmu_co8348189.1_g000001 Rmu_sc0002111.1_g000016
rosa_roxburghii	Rroxscaffold_5G00355200
rosa_rugosa	Rorug04G0102200 Rorug04G0102200
rosa_samantha	Rh4AG160400 Rh4BG159500 Rh4CG172500 Rh4DG155300
rosa_wichuraiana	Rw4G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	321
AccB1I	GGYRCC	2 cut(s)	251, 321
AciI	CCGC	4 cut(s)	5, 41, 496, 731
AclWI	GGATC	4 cut(s)	18, 416, 860, 873
AcsI	RAATTY	2 cut(s)	583, 698
AcuI	CTGAAG	4 cut(s)	17, 267, 879, 967
AfaI	GTAC	1 cut(s)	323
AfiI	CCNNNNNNNGG	3 cut(s)	208, 214, 544
AgsI	TTSAA	9 cut(s)	185, 242, 368, 379, 430, 582, 803, 873, 886
AhlI	ACTAGT	1 cut(s)	671
AjnI	CCWGG	2 cut(s)	384, 794
AluBI	AGCT	8 cut(s)	154, 245, 469, 490, 523, 623, 918, 981
AluI	AGCT	8 cut(s)	154, 245, 469, 490, 523, 623, 918, 981
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	1 cut(s)	943
AlwI	GGATC	4 cut(s)	18, 416, 860, 873
Ama87I	CYCGRG	1 cut(s)	896
ApeKI	GCWGC	3 cut(s)	56, 151, 836
ApoI	RAATTY	2 cut(s)	583, 698
ArsI	GACNNNNNNTTYG	2 cut(s)	991, 1023
AseI	ATTAAT	1 cut(s)	960
Asp700I	GAANNNNTTC	1 cut(s)	852
Asp718I	GGTACC	1 cut(s)	321
AspS9I	GGNCC	1 cut(s)	733
AsuC2I	CCSGG	2 cut(s)	148, 209
AsuHPI	GGTGA	4 cut(s)	123, 136, 304, 373
AvaI	CYCGRG	1 cut(s)	896
AvaII	GGWCC	1 cut(s)	733
BaeI	ACNNNNGTAYC	2 cut(s)	618, 651
BamHI	GGATCC	1 cut(s)	865
BanI	GGYRCC	2 cut(s)	251, 321
BanII	GRGCYC	1 cut(s)	492
BarI	GAAGNNNNNNTAC	2 cut(s)	734, 766
BauI	CACGAG	1 cut(s)	1013
Bbv12I	GWGCWC	1 cut(s)	492
BbvCI	CCTCAGC	1 cut(s)	524
BbvI	GCAGC	3 cut(s)	43, 163, 823
BccI	CCATC	2 cut(s)	312, 331
BcgI	CGANNNNNNTGC	2 cut(s)	390, 424
BciT130I	CCWGG	2 cut(s)	386, 796
BcnI	CCSGG	2 cut(s)	148, 209
BcoDI	GTCTC	1 cut(s)	943
BcuI	ACTAGT	1 cut(s)	671
BfaI	CTAG	1 cut(s)	672
BfmI	CTRYAG	1 cut(s)	45
BisI	GCNGC	5 cut(s)	6, 42, 57, 152, 837
BlsI	GCNGC	5 cut(s)	7, 43, 58, 153, 838
Bme1390I	CCNGG	4 cut(s)	148, 209, 386, 796
Bme18I	GGWCC	1 cut(s)	733
BmeT110I	CYCGRG	1 cut(s)	896
BmgT120I	GGNCC	1 cut(s)	733
BmiI	GGNNCC	3 cut(s)	253, 323, 867
BmrFI	CCNGG	4 cut(s)	148, 209, 386, 796
BmrI	ACTGGG	1 cut(s)	634
BmsI	GCATC	1 cut(s)	420
BmuI	ACTGGG	1 cut(s)	634
BpmI	CTGGAG	2 cut(s)	704, 861
Bpu10I	CCTNAGC	1 cut(s)	524
BpuEI	CTTGAG	2 cut(s)	287, 440
BpuMI	CCSGG	2 cut(s)	148, 209
BsaBI	GATNNNNATC	1 cut(s)	651
Bsc4I	CCNNNNNNNGG	3 cut(s)	208, 214, 544
Bse1I	ACTGG	2 cut(s)	96, 640
Bse8I	GATNNNNATC	1 cut(s)	651
BseBI	CCWGG	2 cut(s)	386, 796
BseGI	GGATG	4 cut(s)	172, 235, 323, 724
BseJI	GATNNNNATC	1 cut(s)	651
BseLI	CCNNNNNNNGG	3 cut(s)	208, 214, 544
BseMII	CTCAG	3 cut(s)	82, 515, 807
BseNI	ACTGG	2 cut(s)	96, 640
BseRI	GAGGAG	3 cut(s)	51, 54, 239
BseXI	GCAGC	3 cut(s)	43, 163, 823
BsgI	GTGCAG	1 cut(s)	573
BshNI	GGYRCC	2 cut(s)	251, 321
BsiHKAI	GWGCWC	1 cut(s)	492
BsiHKCI	CYCGRG	1 cut(s)	896
BsiSI	CCGG	2 cut(s)	147, 209
BslFI	GGGAC	1 cut(s)	102
BslI	CCNNNNNNNGG	3 cut(s)	208, 214, 544
BsmAI	GTCTC	1 cut(s)	943
BsmFI	GGGAC	1 cut(s)	102
BsoBI	CYCGRG	1 cut(s)	896
Bsp1286I	GDGCHC	1 cut(s)	492
Bsp143I	GATC	6 cut(s)	23, 81, 421, 652, 721, 865
BspACI	CCGC	4 cut(s)	5, 41, 496, 731
BspCNI	CTCAG	3 cut(s)	81, 516, 808
BspLI	GGNNCC	3 cut(s)	253, 323, 867
BspPI	GGATC	4 cut(s)	18, 416, 860, 873
BspT107I	GGYRCC	2 cut(s)	251, 321
BsrI	ACTGG	2 cut(s)	96, 640
BssMI	GATC	6 cut(s)	23, 81, 421, 652, 721, 865
BssSI	CACGAG	1 cut(s)	1013
Bst2BI	CACGAG	1 cut(s)	1013
Bst2UI	CCWGG	2 cut(s)	386, 796
Bst4CI	ACNGT	2 cut(s)	313, 909
Bst6I	CTCTTC	3 cut(s)	45, 228, 855
BstC8I	GCNNGC	2 cut(s)	776, 780
BstDEI	CTNAG	4 cut(s)	68, 448, 524, 816
BstEII	GGTNACC	1 cut(s)	142
BstF5I	GGATG	4 cut(s)	172, 235, 323, 724
BstKTI	GATC	6 cut(s)	26, 84, 424, 655, 724, 868
BstMAI	GTCTC	1 cut(s)	943
BstMBI	GATC	6 cut(s)	23, 81, 421, 652, 721, 865
BstMWI	GCNNNNNNNGC	3 cut(s)	251, 458, 833
BstNI	CCWGG	2 cut(s)	386, 796
BstPI	GGTNACC	1 cut(s)	142
BstSCI	CCNGG	4 cut(s)	146, 207, 384, 794
BstSFI	CTRYAG	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	43, 163, 823
BstX2I	RGATCY	2 cut(s)	23, 865
BstXI	CCANNNNNNTGG	2 cut(s)	337, 962
BstYI	RGATCY	2 cut(s)	23, 865
BtsCI	GGATG	4 cut(s)	172, 235, 323, 724
BtsI	GCAGTG	1 cut(s)	115
BtsIMutI	CAGTG	3 cut(s)	115, 309, 647
Cac8I	GCNNGC	2 cut(s)	776, 780
Cfr13I	GGNCC	1 cut(s)	733
Csp6I	GTAC	1 cut(s)	322
CspCI	CAANNNNNGTGG	2 cut(s)	201, 236
CviAII	CATG	3 cut(s)	484, 543, 715
CviQI	GTAC	1 cut(s)	322
DdeI	CTNAG	4 cut(s)	68, 448, 524, 816
DpnI	GATC	6 cut(s)	25, 83, 423, 654, 723, 867
DpnII	GATC	6 cut(s)	23, 81, 421, 652, 721, 865
DraI	TTTAAA	1 cut(s)	102
Eam1104I	CTCTTC	3 cut(s)	45, 228, 855
EarI	CTCTTC	3 cut(s)	45, 228, 855
Ecl136II	GAGCTC	1 cut(s)	490
Eco24I	GRGCYC	1 cut(s)	492
Eco32I	GATATC	1 cut(s)	553
Eco47I	GGWCC	1 cut(s)	733
Eco53kI	GAGCTC	1 cut(s)	490
Eco57I	CTGAAG	4 cut(s)	17, 267, 879, 967
Eco88I	CYCGRG	1 cut(s)	896
Eco91I	GGTNACC	1 cut(s)	142
EcoICRI	GAGCTC	1 cut(s)	490
EcoO65I	GGTNACC	1 cut(s)	142
EcoRII	CCWGG	2 cut(s)	384, 794
EcoRV	GATATC	1 cut(s)	553
EcoT38I	GRGCYC	1 cut(s)	492
FaeI	CATG	3 cut(s)	487, 546, 718
FaiI	YATR	7 cut(s)	420, 485, 544, 608, 716, 824, 994
FalI	AAGNNNNNCTT	4 cut(s)	783, 815, 837, 869
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	3 cut(s)	483, 542, 714
Fnu4HI	GCNGC	5 cut(s)	6, 42, 57, 152, 837
FokI	GGATG	4 cut(s)	179, 242, 330, 731
FriOI	GRGCYC	1 cut(s)	492
Fsp4HI	GCNGC	5 cut(s)	6, 42, 57, 152, 837
FspBI	CTAG	1 cut(s)	672
GluI	GCNGC	5 cut(s)	6, 42, 57, 152, 837
GsuI	CTGGAG	2 cut(s)	704, 861
HapII	CCGG	2 cut(s)	147, 209
Hin1II	CATG	3 cut(s)	487, 546, 718
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HindIII	AAGCTT	1 cut(s)	467
HinfI	GANTC	3 cut(s)	364, 444, 476
HpaII	CCGG	2 cut(s)	147, 209
HphI	GGTGA	4 cut(s)	123, 136, 304, 373
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	4 cut(s)	71, 81, 475, 924
Hpy188III	TCNNGA	4 cut(s)	182, 376, 683, 857
Hpy8I	GTNNAC	1 cut(s)	301
HpyAV	CCTTC	6 cut(s)	242, 804, 826, 863, 879, 912
HpyCH4III	ACNGT	2 cut(s)	313, 909
HpyCH4IV	ACGT	1 cut(s)	332
HpyCH4V	TGCA	8 cut(s)	120, 411, 590, 602, 661, 714, 951, 1012
HpyF10VI	GCNNNNNNNGC	3 cut(s)	251, 458, 833
HpyF3I	CTNAG	4 cut(s)	68, 448, 524, 816
HpySE526I	ACGT	1 cut(s)	332
Hsp92II	CATG	3 cut(s)	487, 546, 718
KpnI	GGTACC	1 cut(s)	325
Kzo9I	GATC	6 cut(s)	23, 81, 421, 652, 721, 865
LmnI	GCTCC	2 cut(s)	64, 487
Lsp1109I	GCAGC	3 cut(s)	43, 163, 823
LweI	GCATC	1 cut(s)	420
MaeI	CTAG	1 cut(s)	672
MaeII	ACGT	1 cut(s)	332
MaeIII	GTNAC	5 cut(s)	142, 187, 500, 634, 768
MalI	GATC	6 cut(s)	25, 83, 423, 654, 723, 867
MboI	GATC	6 cut(s)	23, 81, 421, 652, 721, 865
MboII	GAAGA	5 cut(s)	23, 62, 245, 857, 872
MflI	RGATCY	2 cut(s)	23, 865
MhlI	GDGCHC	1 cut(s)	492
MluCI	AATT	7 cut(s)	193, 256, 505, 583, 662, 698, 957
MlyI	GAGTC	1 cut(s)	453
MmeI	TCCRAC	3 cut(s)	295, 597, 891
MroXI	GAANNNNTTC	1 cut(s)	852
MseI	TTAA	3 cut(s)	101, 464, 960
MslI	CAYNNNNRTG	1 cut(s)	335
MspI	CCGG	2 cut(s)	147, 209
MspR9I	CCNGG	4 cut(s)	148, 209, 386, 796
MvaI	CCWGG	2 cut(s)	386, 796
MwoI	GCNNNNNNNGC	3 cut(s)	251, 458, 833
NciI	CCSGG	2 cut(s)	148, 209
NdeII	GATC	6 cut(s)	23, 81, 421, 652, 721, 865
NlaIII	CATG	3 cut(s)	487, 546, 718
NlaIV	GGNNCC	3 cut(s)	253, 323, 867
NmuCI	GTSAC	2 cut(s)	142, 768
PdmI	GAANNNNTTC	1 cut(s)	852
PfeI	GAWTC	2 cut(s)	364, 476
PkrI	GCNGC	5 cut(s)	7, 43, 58, 153, 838
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
PshBI	ATTAAT	1 cut(s)	960
Psp124BI	GAGCTC	1 cut(s)	492
Psp6I	CCWGG	2 cut(s)	384, 794
PspEI	GGTNACC	1 cut(s)	142
PspGI	CCWGG	2 cut(s)	384, 794
PspN4I	GGNNCC	3 cut(s)	253, 323, 867
PspPI	GGNCC	1 cut(s)	733
PsuI	RGATCY	2 cut(s)	23, 865
RsaI	GTAC	1 cut(s)	323
RsaNI	GTAC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	335
SacI	GAGCTC	1 cut(s)	492
SaqAI	TTAA	3 cut(s)	101, 464, 960
SatI	GCNGC	5 cut(s)	6, 42, 57, 152, 837
Sau3AI	GATC	6 cut(s)	23, 81, 421, 652, 721, 865
Sau96I	GGNCC	1 cut(s)	733
SchI	GAGTC	1 cut(s)	453
ScrFI	CCNGG	4 cut(s)	148, 209, 386, 796
SduI	GDGCHC	1 cut(s)	492
SfaNI	GCATC	1 cut(s)	420
SfcI	CTRYAG	1 cut(s)	45
SinI	GGWCC	1 cut(s)	733
SmiMI	CAYNNNNRTG	1 cut(s)	335
SmlI	CTYRAG	2 cut(s)	266, 455
SmoI	CTYRAG	2 cut(s)	266, 455
SpeI	ACTAGT	1 cut(s)	671
Sse9I	AATT	7 cut(s)	193, 256, 505, 583, 662, 698, 957
SsiI	CCGC	4 cut(s)	5, 41, 496, 731
SspMI	CTAG	1 cut(s)	672
SstI	GAGCTC	1 cut(s)	492
StyD4I	CCNGG	4 cut(s)	146, 207, 384, 794
TaaI	ACNGT	2 cut(s)	313, 909
TaiI	ACGT	1 cut(s)	335
TaqI	TCGA	2 cut(s)	84, 655
TasI	AATT	7 cut(s)	193, 256, 505, 583, 662, 698, 957
TauI	GCSGC	2 cut(s)	8, 44
TfiI	GAWTC	2 cut(s)	364, 476
Tru1I	TTAA	3 cut(s)	101, 464, 960
Tru9I	TTAA	3 cut(s)	101, 464, 960
TscAI	CASTG	3 cut(s)	122, 316, 647
TseFI	GTSAC	2 cut(s)	142, 768
TseI	GCWGC	3 cut(s)	56, 151, 836
Tsp45I	GTSAC	2 cut(s)	142, 768
TspDTI	ATGAA	4 cut(s)	246, 468, 472, 531
TspGWI	ACGGA	2 cut(s)	626, 844
TspRI	CASTG	3 cut(s)	122, 316, 647
VpaK11BI	GGWCC	1 cut(s)	733
VspI	ATTAAT	1 cut(s)	960
XapI	RAATTY	2 cut(s)	583, 698
XmnI	GAANNNNTTC	1 cut(s)	852
XspI	CTAG	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.