Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0011440

Physical Location & Seq

Genomic Coordinates Forward (+)

37761400 .. 37767675

Gene Structure 6276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG172500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCGGCGAACACAATGGTTAGATCCTTTCTTCAGGTTGCTGCTACAGAAGAGGTTGCTCCTCCTCTCAGAGTTGTTCAGATCGAAGGACTGGTTATCTTGAAGATAATCAAGCACTGCAAGGAGTTTGCACCGGCTCTGGTCACAGGCCAACTTCTTGGCTTGGATGTTGGCAGTGTTCTTGAAGTTACTAATTGTTTCCCATTCCCGATTAGGGAGGAGGATGAAGAGATTGAAGCTGATGGTGCCAATTACCAGCTCGAGATGATGAGATGTTTGAGAGAGGTGAATGTTGACAATAACACTGTTGGATGGTACCAATCCACATTGTTGGGTTCTTTTCAAACGGTGGAGTTGATTGAGACATTCATGAACTACCAGGAAAATATTAGACGGTGTGTGTGCATCATTTATGATCCATTGAAATCCAATCAGGGAGTCTTAGCACTGAAGGCATTGAAGCTTTCTGATTCATTCATGGAGCTCTACCGCAGTAACAATTTTACAGGGGAGAAGTTGAGGGAGAAAAACCTTTCATGGGTGGATATCTTTGAGGAAATACCAAAACGTGTCACGCCAGCAAGCCCAACAGCAAGCATGGCTTCAAAAGAGAAGGTAAGACATTGCATTCGGAATAAATTCACGGTATTATTGTTTTGGGATTCTCTCATTTGGGTTCTTAAATGTGAATTAGCATTTGCAATTTCTTTTGTGGATGCTTGTTTAGAGCCATTGTGCATGCATATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006417 GO:0006446 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0033993 GO:0034248 GO:0034250 GO:0034284 GO:0034285 GO:0034286 GO:0042221 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045948 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:1901700 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 ko03013 ko05162 map00906 map01100 map01110 map03013 map05162

Pfam Domains

Protein Families

JAB

Protein Analysis

249

Amino Acids

28.33

Weight (kDa)

5.16

Isoelectric Point (pI)

50.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JAB	PF01398	24 - 128	6.9e-17	JAB1/Mov34/MPN/PAD-1 ubiquitin protease
eIF3h_C	PF19445	144 - 189	1.4e-08	C-terminal region of eIF3h

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10840 AT1G10840
fragaria_vesca	FvH4_4g12310 FvH4_4g12310 FvH4_4g12310
malus_domestica	MD04G1027700.v1.1
prunus_persica	Prupe.1G177100_v2.0.a1
pyrus_communis	pycom04g02430
rosa_chinensis	RchiOBHm_Chr4g0410381
rosa_laevigata	RLG00000008432
rosa_multiflora	Rmu_co8348189.1_g000001 Rmu_sc0002111.1_g000016
rosa_roxburghii	Rroxscaffold_5G00355200
rosa_rugosa	Rorug04G0102200 Rorug04G0102200
rosa_samantha	Rh4AG160400 Rh4BG159500 Rh4CG172500 Rh4DG155300
rosa_wichuraiana	Rw4G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	315
AccB1I	GGYRCC	2 cut(s)	245, 315
AciI	CCGC	2 cut(s)	5, 490
AclWI	GGATC	2 cut(s)	18, 410
AcsI	RAATTY	1 cut(s)	638
AcuI	CTGAAG	2 cut(s)	17, 470
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	2 cut(s)	214, 538
AflIII	ACRYGT	1 cut(s)	568
AgsI	TTSAA	7 cut(s)	103, 185, 236, 344, 424, 460, 606
AjnI	CCWGG	1 cut(s)	378
AluBI	AGCT	4 cut(s)	239, 259, 463, 484
AluI	AGCT	4 cut(s)	239, 259, 463, 484
Alw21I	GWGCWC	1 cut(s)	486
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	2 cut(s)	18, 410
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	638
ArsI	GACNNNNNNTTYG	2 cut(s)	612, 644
Asp700I	GAANNNNTTC	1 cut(s)	638
Asp718I	GGTACC	1 cut(s)	315
AsuHPI	GGTGA	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	260
BanI	GGYRCC	2 cut(s)	245, 315
BanII	GRGCYC	1 cut(s)	486
Bbv12I	GWGCWC	1 cut(s)	486
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	2 cut(s)	236, 306
BciT130I	CCWGG	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	45
BisI	GCNGC	2 cut(s)	6, 42
BlsI	GCNGC	2 cut(s)	7, 43
Bme1390I	CCNGG	1 cut(s)	380
BmeT110I	CYCGRG	1 cut(s)	260
BmiI	GGNNCC	2 cut(s)	247, 317
BmrFI	CCNGG	1 cut(s)	380
BmsI	GCATC	2 cut(s)	414, 706
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 538
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	1 cut(s)	96
Bse3DI	GCAATG	1 cut(s)	622
BseBI	CCWGG	1 cut(s)	380
BseGI	GGATG	4 cut(s)	172, 229, 317, 721
BseLI	CCNNNNNNNGG	2 cut(s)	214, 538
BseMI	GCAATG	1 cut(s)	622
BseMII	CTCAG	1 cut(s)	82
BseNI	ACTGG	1 cut(s)	96
BseRI	GAGGAG	3 cut(s)	51, 54, 233
BseXI	GCAGC	1 cut(s)	28
BshFI	GGCC	1 cut(s)	150
BshNI	GGYRCC	2 cut(s)	245, 315
BsiHKAI	GWGCWC	1 cut(s)	486
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	134
BslI	CCNNNNNNNGG	2 cut(s)	214, 538
BsmAI	GTCTC	1 cut(s)	356
BsmI	GAATGC	1 cut(s)	627
BsnI	GGCC	1 cut(s)	150
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	3 cut(s)	23, 81, 415
BspACI	CCGC	2 cut(s)	5, 490
BspANI	GGCC	1 cut(s)	150
BspCNI	CTCAG	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	247, 317
BspPI	GGATC	2 cut(s)	18, 410
BspT107I	GGYRCC	2 cut(s)	245, 315
BsrDI	GCAATG	1 cut(s)	622
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	96
BssAI	RCCGGY	1 cut(s)	133
BssMI	GATC	3 cut(s)	23, 81, 415
Bst2UI	CCWGG	1 cut(s)	380
Bst4CI	ACNGT	4 cut(s)	307, 349, 396, 646
Bst6I	CTCTTC	2 cut(s)	45, 222
BstC8I	GCNNGC	4 cut(s)	579, 583, 595, 740
BstDEI	CTNAG	2 cut(s)	68, 442
BstF5I	GGATG	4 cut(s)	172, 229, 317, 721
BstKTI	GATC	3 cut(s)	26, 84, 418
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	3 cut(s)	23, 81, 415
BstMWI	GCNNNNNNNGC	3 cut(s)	245, 452, 599
BstNI	CCWGG	1 cut(s)	380
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	1 cut(s)	378
BstSFI	CTRYAG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	28
BstX2I	RGATCY	1 cut(s)	23
BstXI	CCANNNNNNTGG	2 cut(s)	158, 331
BstYI	RGATCY	1 cut(s)	23
BsuRI	GGCC	1 cut(s)	150
BtsCI	GGATG	4 cut(s)	172, 229, 317, 721
BtsI	GCAGTG	2 cut(s)	115, 181
BtsIMutI	CAGTG	4 cut(s)	115, 181, 303, 446
Cac8I	GCNNGC	4 cut(s)	579, 583, 595, 740
CciI	TCATGA	1 cut(s)	369
Cfr10I	RCCGGY	1 cut(s)	133
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	5 cut(s)	370, 478, 537, 598, 739
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	68, 442
DpnI	GATC	3 cut(s)	25, 83, 417
DpnII	GATC	3 cut(s)	23, 81, 415
Eam1104I	CTCTTC	2 cut(s)	45, 222
EarI	CTCTTC	2 cut(s)	45, 222
Ecl136II	GAGCTC	1 cut(s)	484
Eco24I	GRGCYC	1 cut(s)	486
Eco32I	GATATC	1 cut(s)	547
Eco53kI	GAGCTC	1 cut(s)	484
Eco57I	CTGAAG	2 cut(s)	17, 470
Eco88I	CYCGRG	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	484
EcoRII	CCWGG	1 cut(s)	378
EcoRV	GATATC	1 cut(s)	547
EcoT22I	ATGCAT	1 cut(s)	744
EcoT38I	GRGCYC	1 cut(s)	486
FaeI	CATG	5 cut(s)	373, 481, 540, 601, 742
FaiI	YATR	9 cut(s)	371, 414, 479, 538, 599, 740, 744, 746, 748
FalI	AAGNNNNNCTT	2 cut(s)	586, 618
FatI	CATG	5 cut(s)	369, 477, 536, 597, 738
Fnu4HI	GCNGC	2 cut(s)	6, 42
FokI	GGATG	4 cut(s)	179, 236, 324, 728
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	2 cut(s)	6, 42
GluI	GCNGC	2 cut(s)	6, 42
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	1 cut(s)	134
Hin1II	CATG	5 cut(s)	373, 481, 540, 601, 742
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	1 cut(s)	461
HinfI	GANTC	3 cut(s)	438, 470, 662
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	1 cut(s)	295
Hpy188I	TCNGA	4 cut(s)	71, 81, 469, 633
Hpy188III	TCNNGA	5 cut(s)	100, 182, 208, 262, 370
Hpy8I	GTNNAC	1 cut(s)	295
HpyAV	CCTTC	3 cut(s)	80, 445, 607
HpyCH4III	ACNGT	4 cut(s)	307, 349, 396, 646
HpyCH4IV	ACGT	1 cut(s)	568
HpyCH4V	TGCA	7 cut(s)	120, 131, 405, 627, 701, 738, 742
HpyF10VI	GCNNNNNNNGC	3 cut(s)	245, 452, 599
HpyF3I	CTNAG	2 cut(s)	68, 442
HpySE526I	ACGT	1 cut(s)	568
Hsp92II	CATG	5 cut(s)	373, 481, 540, 601, 742
KpnI	GGTACC	1 cut(s)	319
Kzo9I	GATC	3 cut(s)	23, 81, 415
LmnI	GCTCC	2 cut(s)	64, 481
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	2 cut(s)	414, 706
MaeII	ACGT	1 cut(s)	568
MaeIII	GTNAC	4 cut(s)	142, 187, 494, 571
MalI	GATC	3 cut(s)	25, 83, 417
MboI	GATC	3 cut(s)	23, 81, 415
MboII	GAAGA	4 cut(s)	23, 62, 115, 239
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	1 cut(s)	486
MluCI	AATT	6 cut(s)	193, 250, 499, 638, 689, 702
MlyI	GAGTC	1 cut(s)	447
MmeI	TCCRAC	1 cut(s)	289
MnlI	CCTC	8 cut(s)	46, 72, 75, 211, 214, 277, 513, 547
Mph1103I	ATGCAT	1 cut(s)	744
MroXI	GAANNNNTTC	1 cut(s)	638
MseI	TTAA	1 cut(s)	681
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	1 cut(s)	380
Mva1269I	GAATGC	1 cut(s)	627
MvaI	CCWGG	1 cut(s)	380
MwoI	GCNNNNNNNGC	3 cut(s)	245, 452, 599
NdeII	GATC	3 cut(s)	23, 81, 415
NlaIII	CATG	5 cut(s)	373, 481, 540, 601, 742
NlaIV	GGNNCC	2 cut(s)	247, 317
NmuCI	GTSAC	2 cut(s)	142, 571
NsiI	ATGCAT	1 cut(s)	744
NspI	RCATGY	1 cut(s)	742
PaeI	GCATGC	1 cut(s)	742
PaeR7I	CTCGAG	1 cut(s)	260
PagI	TCATGA	1 cut(s)	369
PctI	GAATGC	1 cut(s)	627
PdmI	GAANNNNTTC	1 cut(s)	638
PfeI	GAWTC	2 cut(s)	470, 662
PkrI	GCNGC	2 cut(s)	7, 43
PleI	GAGTC	1 cut(s)	446
PpsI	GAGTC	1 cut(s)	446
Psp124BI	GAGCTC	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	378
PspGI	CCWGG	1 cut(s)	378
PspN4I	GGNNCC	2 cut(s)	247, 317
PsuI	RGATCY	1 cut(s)	23
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SacI	GAGCTC	1 cut(s)	486
SaqAI	TTAA	1 cut(s)	681
SatI	GCNGC	2 cut(s)	6, 42
Sau3AI	GATC	3 cut(s)	23, 81, 415
SchI	GAGTC	1 cut(s)	447
ScrFI	CCNGG	1 cut(s)	380
SduI	GDGCHC	1 cut(s)	486
SfaNI	GCATC	2 cut(s)	414, 706
SfcI	CTRYAG	1 cut(s)	45
Sfr274I	CTCGAG	1 cut(s)	260
SlaI	CTCGAG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SphI	GCATGC	1 cut(s)	742
Sse9I	AATT	6 cut(s)	193, 250, 499, 638, 689, 702
SsiI	CCGC	2 cut(s)	5, 490
SspI	AATATT	1 cut(s)	388
SstI	GAGCTC	1 cut(s)	486
StyD4I	CCNGG	1 cut(s)	378
TaaI	ACNGT	4 cut(s)	307, 349, 396, 646
TaiI	ACGT	1 cut(s)	571
TaqI	TCGA	2 cut(s)	84, 261
TasI	AATT	6 cut(s)	193, 250, 499, 638, 689, 702
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	2 cut(s)	470, 662
Tru1I	TTAA	1 cut(s)	681
Tru9I	TTAA	1 cut(s)	681
TscAI	CASTG	4 cut(s)	122, 181, 310, 453
TseFI	GTSAC	2 cut(s)	142, 571
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	2 cut(s)	142, 571
TspDTI	ATGAA	6 cut(s)	240, 358, 386, 462, 466, 525
TspRI	CASTG	4 cut(s)	122, 181, 310, 453
XapI	RAATTY	1 cut(s)	638
XceI	RCATGY	1 cut(s)	742
XhoI	CTCGAG	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	638
Zsp2I	ATGCAT	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.