Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002111.1

Orthogroup ID

OG0011440

Physical Location & Seq

Genomic Coordinates Reverse (-)

62954 .. 69883

Gene Structure 6930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002111.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1041 bp

atggcggcgaacacaatggttagatcctttcttcaggttgctgctacagaagaggttgctcctcctctcagagttgttcagatcgaaggactggttatcttgaagataatcaagcactgcaaggagtttgcaccggctctggtcacaggccaacttcttggcttggatgttggcagtgttcttgaagtcactaattgtttcccattcccgattagggaggaggatgaagagattgaagctgatggtgccaattaccagctcgagatgatgagatgtttgcgagaggtgaatgttgacaataacactgttggatggtaccaatccacattgttgggttcttttcaaacggtggagttgattgagacattcatgaactaccaggaaaatattagacggtgtgtgtgcatcatttatgatccattgaaatccaatcagggagtcttagcactgaaggcattgaagctttctgattcattcatggagctctaccgcagtaacaattttacaggggagaagttgagggagaaaaacctttcatgggtggatatctttgaggaaatacctatcaaagtttcaaactctgcacttattagtgcatttatgacggagttggaagctgatacacctgttatccagtgtgattatgatcgtctgcaattatcaactagtccatttctagagaggaatatggaatttcttattgagtgcatggatgatttgtcaatggaacagcagaagttccaatactattacagaaacgtgtcacgccagcaagcccaacagcaagcatggcttcaaaagagaagggccaattatggaaaggatttgattcgttacccgactcgacgacctggtgggttctttttctggcaaccatatagagcactagtggcaaacgcttcatatcggcggtgtgaagcggtatacgctgtcggtcctctttggtccaaaccattagcggcggtggcaaaacgaagcccaaaaagcttctttgattctctcaacggatttttcaatttcggccatgtcaaggtgtcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006417 GO:0006446 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0033993 GO:0034248 GO:0034250 GO:0034284 GO:0034285 GO:0034286 GO:0042221 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045948 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:1901700 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 ko03013 ko05162 map00906 map01100 map01110 map03013 map05162

Pfam Domains

Protein Families

JAB

Protein Analysis

346

Amino Acids

39.83

Weight (kDa)

5.7

Isoelectric Point (pI)

51.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10840 AT1G10840
fragaria_vesca	FvH4_4g12310 FvH4_4g12310 FvH4_4g12310
malus_domestica	MD04G1027700.v1.1
prunus_persica	Prupe.1G177100_v2.0.a1
pyrus_communis	pycom04g02430
rosa_chinensis	RchiOBHm_Chr4g0410381
rosa_laevigata	RLG00000008432
rosa_multiflora	Rmu_co8348189.1_g000001 Rmu_sc0002111.1_g000016
rosa_roxburghii	Rroxscaffold_5G00355200
rosa_rugosa	Rorug04G0102200 Rorug04G0102200
rosa_samantha	Rh4AG160400 Rh4BG159500 Rh4CG172500 Rh4DG155300
rosa_wichuraiana	Rw4G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	315
AccB1I	GGYRCC	2 cut(s)	245, 315
AccI	GTMKAC	1 cut(s)	924
AciI	CCGC	6 cut(s)	5, 490, 910, 920, 959, 962
AclWI	GGATC	2 cut(s)	18, 410
AcoI	YGGCCR	1 cut(s)	1021
AcsI	RAATTY	1 cut(s)	692
AcuI	CTGAAG	2 cut(s)	17, 470
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	3 cut(s)	214, 538, 1030
AflIII	ACRYGT	1 cut(s)	759
AgsI	TTSAA	9 cut(s)	103, 185, 236, 344, 424, 460, 576, 797, 1015
AhlI	ACTAGT	2 cut(s)	665, 886
AjnI	CCWGG	2 cut(s)	378, 850
AluBI	AGCT	6 cut(s)	239, 259, 463, 484, 617, 987
AluI	AGCT	6 cut(s)	239, 259, 463, 484, 617, 987
Alw21I	GWGCWC	2 cut(s)	486, 886
Alw26I	GTCTC	1 cut(s)	356
AlwI	GGATC	2 cut(s)	18, 410
Ama87I	CYCGRG	1 cut(s)	260
AoxI	GGCC	3 cut(s)	148, 807, 1021
ApeKI	GCWGC	1 cut(s)	41
ApoI	RAATTY	1 cut(s)	692
Asp718I	GGTACC	1 cut(s)	315
AspS9I	GGNCC	3 cut(s)	807, 935, 945
AsuHPI	GGTGA	1 cut(s)	298
AvaI	CYCGRG	1 cut(s)	260
AvaII	GGWCC	2 cut(s)	935, 945
BaeI	ACNNNNGTAYC	2 cut(s)	612, 645
BanI	GGYRCC	2 cut(s)	245, 315
BanII	GRGCYC	1 cut(s)	486
BarI	GAAGNNNNNNTAC	2 cut(s)	728, 760
Bbv12I	GWGCWC	2 cut(s)	486, 886
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	2 cut(s)	236, 306
BciT130I	CCWGG	2 cut(s)	380, 852
BcoDI	GTCTC	1 cut(s)	356
BcuI	ACTAGT	2 cut(s)	665, 886
BfaI	CTAG	3 cut(s)	666, 677, 887
BfmI	CTRYAG	1 cut(s)	45
BisI	GCNGC	3 cut(s)	6, 42, 960
BlsI	GCNGC	3 cut(s)	7, 43, 961
Bme1390I	CCNGG	2 cut(s)	380, 852
Bme18I	GGWCC	2 cut(s)	935, 945
BmeT110I	CYCGRG	1 cut(s)	260
BmgT120I	GGNCC	3 cut(s)	807, 935, 945
BmiI	GGNNCC	2 cut(s)	247, 317
BmrFI	CCNGG	2 cut(s)	380, 852
BmsI	GCATC	1 cut(s)	414
BsaBI	GATNNNNATC	1 cut(s)	645
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 538, 1030
Bse118I	RCCGGY	1 cut(s)	133
Bse1I	ACTGG	2 cut(s)	96, 634
Bse8I	GATNNNNATC	1 cut(s)	645
BseBI	CCWGG	2 cut(s)	380, 852
BseGI	GGATG	4 cut(s)	172, 229, 317, 718
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	3 cut(s)	214, 538, 1030
BseMII	CTCAG	1 cut(s)	82
BseNI	ACTGG	2 cut(s)	96, 634
BseRI	GAGGAG	3 cut(s)	51, 54, 233
BseXI	GCAGC	1 cut(s)	28
BsgI	GTGCAG	1 cut(s)	567
BshFI	GGCC	3 cut(s)	150, 809, 1023
BshNI	GGYRCC	2 cut(s)	245, 315
BsiHKAI	GWGCWC	2 cut(s)	486, 886
BsiHKCI	CYCGRG	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	134
BslI	CCNNNNNNNGG	3 cut(s)	214, 538, 1030
BsmAI	GTCTC	1 cut(s)	356
BsnI	GGCC	3 cut(s)	150, 809, 1023
BsoBI	CYCGRG	1 cut(s)	260
Bsp1286I	GDGCHC	2 cut(s)	486, 886
Bsp143I	GATC	4 cut(s)	23, 81, 415, 646
BspACI	CCGC	6 cut(s)	5, 490, 910, 920, 959, 962
BspANI	GGCC	3 cut(s)	150, 809, 1023
BspCNI	CTCAG	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	2 cut(s)	247, 317
BspPI	GGATC	2 cut(s)	18, 410
BspT107I	GGYRCC	2 cut(s)	245, 315
BsrFI	RCCGGY	1 cut(s)	133
BsrI	ACTGG	2 cut(s)	96, 634
BssAI	RCCGGY	1 cut(s)	133
BssMI	GATC	4 cut(s)	23, 81, 415, 646
BssNAI	GTATAC	1 cut(s)	925
Bst1107I	GTATAC	1 cut(s)	925
Bst2UI	CCWGG	2 cut(s)	380, 852
Bst4CI	ACNGT	3 cut(s)	307, 349, 396
Bst6I	CTCTTC	2 cut(s)	45, 222
BstC8I	GCNNGC	3 cut(s)	770, 774, 786
BstDEI	CTNAG	2 cut(s)	68, 442
BstF5I	GGATG	4 cut(s)	172, 229, 317, 718
BstKTI	GATC	4 cut(s)	26, 84, 418, 649
BstMAI	GTCTC	1 cut(s)	356
BstMBI	GATC	4 cut(s)	23, 81, 415, 646
BstMWI	GCNNNNNNNGC	7 cut(s)	245, 452, 790, 890, 926, 965, 984
BstNI	CCWGG	2 cut(s)	380, 852
BstSCI	CCNGG	2 cut(s)	378, 850
BstSFI	CTRYAG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	28
BstX2I	RGATCY	1 cut(s)	23
BstXI	CCANNNNNNTGG	2 cut(s)	158, 331
BstYI	RGATCY	1 cut(s)	23
BstZ17I	GTATAC	1 cut(s)	925
BsuRI	GGCC	3 cut(s)	150, 809, 1023
BtsCI	GGATG	4 cut(s)	172, 229, 317, 718
BtsI	GCAGTG	2 cut(s)	115, 181
BtsIMutI	CAGTG	5 cut(s)	115, 181, 303, 446, 641
Cac8I	GCNNGC	3 cut(s)	770, 774, 786
CciI	TCATGA	1 cut(s)	369
Cfr10I	RCCGGY	1 cut(s)	133
Cfr13I	GGNCC	3 cut(s)	807, 935, 945
CsiI	ACCWGGT	1 cut(s)	850
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	6 cut(s)	370, 478, 537, 709, 789, 1025
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	68, 442
DpnI	GATC	4 cut(s)	25, 83, 417, 648
DpnII	GATC	4 cut(s)	23, 81, 415, 646
EaeI	YGGCCR	1 cut(s)	1021
Eam1104I	CTCTTC	2 cut(s)	45, 222
EarI	CTCTTC	2 cut(s)	45, 222
Ecl136II	GAGCTC	1 cut(s)	484
Eco24I	GRGCYC	1 cut(s)	486
Eco32I	GATATC	1 cut(s)	547
Eco47I	GGWCC	2 cut(s)	935, 945
Eco53kI	GAGCTC	1 cut(s)	484
Eco57I	CTGAAG	2 cut(s)	17, 470
Eco88I	CYCGRG	1 cut(s)	260
EcoICRI	GAGCTC	1 cut(s)	484
EcoRII	CCWGG	2 cut(s)	378, 850
EcoRV	GATATC	1 cut(s)	547
EcoT38I	GRGCYC	1 cut(s)	486
FaeI	CATG	6 cut(s)	373, 481, 540, 712, 792, 1028
FalI	AAGNNNNNCTT	2 cut(s)	777, 809
FatI	CATG	6 cut(s)	369, 477, 536, 708, 788, 1024
FblI	GTMKAC	1 cut(s)	924
Fnu4HI	GCNGC	3 cut(s)	6, 42, 960
FokI	GGATG	4 cut(s)	179, 236, 324, 725
FriOI	GRGCYC	1 cut(s)	486
Fsp4HI	GCNGC	3 cut(s)	6, 42, 960
FspBI	CTAG	3 cut(s)	666, 677, 887
GluI	GCNGC	3 cut(s)	6, 42, 960
HaeIII	GGCC	3 cut(s)	150, 809, 1023
HapII	CCGG	1 cut(s)	134
Hin1II	CATG	6 cut(s)	373, 481, 540, 712, 792, 1028
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HindIII	AAGCTT	2 cut(s)	461, 985
HinfI	GANTC	5 cut(s)	438, 470, 829, 841, 995
HpaII	CCGG	1 cut(s)	134
HphI	GGTGA	1 cut(s)	298
Hpy166II	GTNNAC	2 cut(s)	295, 925
Hpy188I	TCNGA	3 cut(s)	71, 81, 469
Hpy188III	TCNNGA	6 cut(s)	100, 182, 208, 262, 370, 677
Hpy8I	GTNNAC	2 cut(s)	295, 925
Hpy99I	CGWCG	1 cut(s)	849
HpyAV	CCTTC	3 cut(s)	80, 445, 798
HpyCH4III	ACNGT	3 cut(s)	307, 349, 396
HpyCH4IV	ACGT	1 cut(s)	759
HpyCH4V	TGCA	7 cut(s)	120, 131, 405, 584, 596, 655, 708
HpyF10VI	GCNNNNNNNGC	7 cut(s)	245, 452, 790, 890, 926, 965, 984
HpyF3I	CTNAG	2 cut(s)	68, 442
HpySE526I	ACGT	1 cut(s)	759
Hsp92II	CATG	6 cut(s)	373, 481, 540, 712, 792, 1028
KpnI	GGTACC	1 cut(s)	319
Kzo9I	GATC	4 cut(s)	23, 81, 415, 646
LmnI	GCTCC	2 cut(s)	64, 481
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	1 cut(s)	414
MabI	ACCWGGT	1 cut(s)	850
MaeI	CTAG	3 cut(s)	666, 677, 887
MaeII	ACGT	1 cut(s)	759
MaeIII	GTNAC	5 cut(s)	142, 187, 494, 762, 833
MalI	GATC	4 cut(s)	25, 83, 417, 648
MboI	GATC	4 cut(s)	23, 81, 415, 646
MboII	GAAGA	4 cut(s)	23, 62, 115, 239
MflI	RGATCY	1 cut(s)	23
MhlI	GDGCHC	2 cut(s)	486, 886
MluCI	AATT	7 cut(s)	193, 250, 499, 656, 692, 811, 1015
MlyI	GAGTC	2 cut(s)	447, 835
MmeI	TCCRAC	2 cut(s)	289, 591
MspI	CCGG	1 cut(s)	134
MspR9I	CCNGG	2 cut(s)	380, 852
MvaI	CCWGG	2 cut(s)	380, 852
MwoI	GCNNNNNNNGC	7 cut(s)	245, 452, 790, 890, 926, 965, 984
NdeII	GATC	4 cut(s)	23, 81, 415, 646
NlaIII	CATG	6 cut(s)	373, 481, 540, 712, 792, 1028
NlaIV	GGNNCC	2 cut(s)	247, 317
NmuCI	GTSAC	3 cut(s)	142, 187, 762
PaeR7I	CTCGAG	1 cut(s)	260
PagI	TCATGA	1 cut(s)	369
PfeI	GAWTC	3 cut(s)	470, 829, 995
PkrI	GCNGC	3 cut(s)	7, 43, 961
PleI	GAGTC	2 cut(s)	446, 835
PpsI	GAGTC	2 cut(s)	446, 835
Psp124BI	GAGCTC	1 cut(s)	486
Psp6I	CCWGG	2 cut(s)	378, 850
PspGI	CCWGG	2 cut(s)	378, 850
PspN4I	GGNNCC	2 cut(s)	247, 317
PspPI	GGNCC	3 cut(s)	807, 935, 945
PsuI	RGATCY	1 cut(s)	23
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SacI	GAGCTC	1 cut(s)	486
SatI	GCNGC	3 cut(s)	6, 42, 960
Sau3AI	GATC	4 cut(s)	23, 81, 415, 646
Sau96I	GGNCC	3 cut(s)	807, 935, 945
SchI	GAGTC	2 cut(s)	447, 835
ScrFI	CCNGG	2 cut(s)	380, 852
SduI	GDGCHC	2 cut(s)	486, 886
SexAI	ACCWGGT	1 cut(s)	850
SfaNI	GCATC	1 cut(s)	414
SfcI	CTRYAG	1 cut(s)	45
Sfr274I	CTCGAG	1 cut(s)	260
SinI	GGWCC	2 cut(s)	935, 945
SlaI	CTCGAG	1 cut(s)	260
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
SpeI	ACTAGT	2 cut(s)	665, 886
Sse9I	AATT	7 cut(s)	193, 250, 499, 656, 692, 811, 1015
SsiI	CCGC	6 cut(s)	5, 490, 910, 920, 959, 962
SspI	AATATT	1 cut(s)	388
SspMI	CTAG	3 cut(s)	666, 677, 887
SstI	GAGCTC	1 cut(s)	486
StyD4I	CCNGG	2 cut(s)	378, 850
TaaI	ACNGT	3 cut(s)	307, 349, 396
TaiI	ACGT	1 cut(s)	762
TaqI	TCGA	3 cut(s)	84, 261, 844
TaqII	GACCGA	1 cut(s)	923
TasI	AATT	7 cut(s)	193, 250, 499, 656, 692, 811, 1015
TauI	GCSGC	2 cut(s)	8, 962
TfiI	GAWTC	3 cut(s)	470, 829, 995
TscAI	CASTG	5 cut(s)	122, 181, 310, 453, 641
TseFI	GTSAC	3 cut(s)	142, 187, 762
TseI	GCWGC	1 cut(s)	41
Tsp45I	GTSAC	3 cut(s)	142, 187, 762
TspDTI	ATGAA	7 cut(s)	240, 358, 386, 462, 466, 525, 891
TspGWI	ACGGA	2 cut(s)	620, 1020
TspRI	CASTG	5 cut(s)	122, 181, 310, 453, 641
VpaK11BI	GGWCC	2 cut(s)	935, 945
XapI	RAATTY	1 cut(s)	692
XbaI	TCTAGA	1 cut(s)	676
XhoI	CTCGAG	1 cut(s)	260
XmiI	GTMKAC	1 cut(s)	924
XspI	CTAG	3 cut(s)	666, 677, 887

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.