Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0011440

Physical Location & Seq

Genomic Coordinates Forward (+)

33841989 .. 33842762

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00355200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGCTCGGAAGGCTGCCGGAGAAGAACCGCTTCCTGAAGAGGATCCTTCAAACCCCATTTTTAAGCCACTCCCCGAGCCTTCACGGTTGGACAGCTTTCTGATAACAAATCAAATCTCAAACTACTGCAACCAAATTAATGGGGTTGCTGGACAGAGCTTCAGCAGATTATATTTGACGAAAGCTTTGCATGAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006417 GO:0006446 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009737 GO:0009743 GO:0009744 GO:0009746 GO:0009749 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010608 GO:0010628 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032268 GO:0032270 GO:0032991 GO:0033993 GO:0034248 GO:0034250 GO:0034284 GO:0034285 GO:0034286 GO:0042221 GO:0042788 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044444 GO:0044464 GO:0045727 GO:0045948 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0065007 GO:0080090 GO:0097305 GO:1901700 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko00906 ko01100 ko01110 ko03013 ko05162 map00906 map01100 map01110 map03013 map05162

Pfam Domains

Protein Families

JAB

Protein Analysis

66

Amino Acids

7.36

Weight (kDa)

5.16

Isoelectric Point (pI)

50.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
eIF3h_C	PF19445	2 - 65	1.8e-16	C-terminal region of eIF3h

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011440)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G10840 AT1G10840
fragaria_vesca	FvH4_4g12310 FvH4_4g12310 FvH4_4g12310
malus_domestica	MD04G1027700.v1.1
prunus_persica	Prupe.1G177100_v2.0.a1
pyrus_communis	pycom04g02430
rosa_chinensis	RchiOBHm_Chr4g0410381
rosa_laevigata	RLG00000008432
rosa_multiflora	Rmu_co8348189.1_g000001 Rmu_sc0002111.1_g000016
rosa_roxburghii	Rroxscaffold_5G00355200
rosa_rugosa	Rorug04G0102200 Rorug04G0102200
rosa_samantha	Rh4AG160400 Rh4BG159500 Rh4CG172500 Rh4DG155300
rosa_wichuraiana	Rw4G013370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	29
AclWI	GGATC	2 cut(s)	38, 51
AcuI	CTGAAG	2 cut(s)	57, 145
AgsI	TTSAA	1 cut(s)	51
AluBI	AGCT	3 cut(s)	96, 159, 185
AluI	AGCT	3 cut(s)	96, 159, 185
AlwI	GGATC	2 cut(s)	38, 51
Ama87I	CYCGRG	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	14
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AseI	ATTAAT	1 cut(s)	138
Asp700I	GAANNNNTTC	1 cut(s)	30
AvaI	CYCGRG	1 cut(s)	74
BamHI	GGATCC	1 cut(s)	43
BcgI	CGANNNNNNTGC	1 cut(s)	169
BisI	GCNGC	1 cut(s)	15
BlsI	GCNGC	1 cut(s)	16
BmeT110I	CYCGRG	1 cut(s)	74
BmiI	GGNNCC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	74
BsiSI	CCGG	1 cut(s)	18
BsoBI	CYCGRG	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	43
BspACI	CCGC	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	45
BspPI	GGATC	2 cut(s)	38, 51
BssMI	GATC	1 cut(s)	43
Bst4CI	ACNGT	1 cut(s)	87
Bst6I	CTCTTC	1 cut(s)	33
BstKTI	GATC	1 cut(s)	46
BstMBI	GATC	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	43
BstXI	CCANNNNNNTGG	1 cut(s)	140
BstYI	RGATCY	1 cut(s)	43
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	7 cut(s)	5, 14, 67, 79, 96, 159, 185
CviKI_1	RGCY	7 cut(s)	5, 14, 67, 79, 96, 159, 185
DpnI	GATC	1 cut(s)	45
DpnII	GATC	1 cut(s)	43
Eam1104I	CTCTTC	1 cut(s)	33
EarI	CTCTTC	1 cut(s)	33
Eco57I	CTGAAG	2 cut(s)	57, 145
Eco88I	CYCGRG	1 cut(s)	74
FaeI	CATG	1 cut(s)	194
FaiI	YATR	2 cut(s)	172, 192
FalI	AAGNNNNNCTT	2 cut(s)	15, 47
FatI	CATG	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	15
Fsp4HI	GCNGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	15
HapII	CCGG	1 cut(s)	18
Hin1II	CATG	1 cut(s)	194
HindIII	AAGCTT	1 cut(s)	183
HpaII	CCGG	1 cut(s)	18
Hpy188I	TCNGA	2 cut(s)	9, 102
Hpy188III	TCNNGA	1 cut(s)	35
HpyAV	CCTTC	3 cut(s)	4, 57, 90
HpyCH4III	ACNGT	1 cut(s)	87
HpyCH4V	TGCA	2 cut(s)	129, 190
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
Hsp92II	CATG	1 cut(s)	194
Kzo9I	GATC	1 cut(s)	43
LpnPI	CCDG	3 cut(s)	31, 48, 135
MalI	GATC	1 cut(s)	45
MboI	GATC	1 cut(s)	43
MboII	GAAGA	2 cut(s)	35, 50
MflI	RGATCY	1 cut(s)	43
MluCI	AATT	1 cut(s)	135
MmeI	TCCRAC	1 cut(s)	69
MnlI	CCTC	1 cut(s)	34
MroXI	GAANNNNTTC	1 cut(s)	30
MseI	TTAA	2 cut(s)	63, 138
MspI	CCGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	1 cut(s)	45
PdmI	GAANNNNTTC	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	16
PshBI	ATTAAT	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	45
PsuI	RGATCY	1 cut(s)	43
SaqAI	TTAA	2 cut(s)	63, 138
SatI	GCNGC	1 cut(s)	15
Sau3AI	GATC	1 cut(s)	43
SetI	ASST	3 cut(s)	98, 161, 187
SgeI	CNNG	7 cut(s)	18, 30, 47, 86, 88, 96, 162
Sse9I	AATT	1 cut(s)	135
SsiI	CCGC	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	87
TasI	AATT	1 cut(s)	135
Tru1I	TTAA	2 cut(s)	63, 138
Tru9I	TTAA	2 cut(s)	63, 138
TseI	GCWGC	1 cut(s)	14
VspI	ATTAAT	1 cut(s)	138
XmnI	GAANNNNTTC	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.