Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0012882

Physical Location & Seq

Genomic Coordinates Reverse (-)

15997311 .. 15999883

Gene Structure 2573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g12280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTCTTTGATTCAAAACAAGAGGCTTCATTTCCTTATGGAAAGATTCGCTGTTATCCCTTTCCGACTCGGCTGCACTTCTCACTCCAGCGTTGAACTCGGCGAAGCAATTGAACCACGAAAACTGAAAATCAGCGCAGCGCCACCAAACCCACCACCACCTCCTCAAGCAACAGACGATGGAAGAACGCAAGGTAGATCAGCAATGAAAAACTCGTTTCATTTCCTGAGTCAAGGCAAGCAGCACATATCTAGTGGGATGCAGAGATTGATCAGGAGCATCAAAAGTTTCTCACAAATATTCGTTTACAAGGAAGACACTGATGAGGAAAAGGAAACAGAAATGGAGATTGGATTCCCTACGGACGTGAAGCATGTGACACACATAGGACTGGATGGCTCTACCACTACAAATAATAATCTCAACAATTTTCATAGCAATGCTGCTCTTCCTCCTCAAGTAGTTTCCTTCCCTTCGATTTCTCTGAAGCAATTTGAGTTGGCCATGGCTGCACAGACCACCCACCAGCCTCCTCATCACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PBD

Protein Analysis

182

Amino Acids

20.21

Weight (kDa)

7.99

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012882)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G27380 AT1G27380 AT1G27380 AT1G27380
fragaria_vesca	FvH4_4g12280
malus_domestica	MD04G1027900.v1.1
prunus_persica	Prupe.1G177300_v2.0.a1
pyrus_communis	pycom04g02450
rosa_chinensis	RchiOBHm_Chr4g0410351
rosa_laevigata	RLG00000008435
rosa_roxburghii	Rroxscaffold_5G00355150
rosa_rugosa	Rorug04G0102200 Rorug04G0102200
rosa_samantha	Rh4AG160200 Rh4BG159100 Rh4CG172300 Rh4DG155100
rosa_wichuraiana	Rw4G013340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	501
AcuI	CTGAAG	1 cut(s)	506
AgsI	TTSAA	3 cut(s)	14, 95, 113
AjiI	CACGTC	1 cut(s)	367
AjuI	GAANNNNNNNTTGG	2 cut(s)	333, 365
AoxI	GGCC	1 cut(s)	501
ApeKI	GCWGC	5 cut(s)	72, 137, 241, 443, 509
AspLEI	GCGC	2 cut(s)	137, 142
AsuHPI	GGTGA	1 cut(s)	530
BalI	TGGCCA	1 cut(s)	503
BbsI	GAAGAC	1 cut(s)	321
BbvI	GCAGC	5 cut(s)	59, 149, 253, 430, 496
BccI	CCATC	2 cut(s)	173, 389
BcgI	CGANNNNNNTGC	2 cut(s)	54, 88
BclI	TGATCA	1 cut(s)	270
BfaI	CTAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	143
BisI	GCNGC	5 cut(s)	73, 138, 242, 444, 510
BlsI	GCNGC	5 cut(s)	74, 139, 243, 445, 511
BmgBI	CACGTC	1 cut(s)	367
BmsI	GCATC	2 cut(s)	249, 288
BpiI	GAAGAC	1 cut(s)	321
BpmI	CTGGAG	1 cut(s)	70
BpuEI	CTTGAG	2 cut(s)	150, 441
BsaJI	CCNNGG	1 cut(s)	504
Bse1I	ACTGG	2 cut(s)	396, 541
Bse3DI	GCAATG	2 cut(s)	210, 445
BseDI	CCNNGG	1 cut(s)	504
BseGI	GGATG	2 cut(s)	264, 400
BseMI	GCAATG	2 cut(s)	210, 445
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	2 cut(s)	396, 541
BseRI	GAGGAG	3 cut(s)	153, 444, 522
BseXI	GCAGC	5 cut(s)	59, 149, 253, 430, 496
BsgI	GTGCAG	2 cut(s)	58, 495
BshFI	GGCC	1 cut(s)	503
BsnI	GGCC	1 cut(s)	503
Bsp143I	GATC	2 cut(s)	197, 270
Bsp19I	CCATGG	1 cut(s)	504
BspANI	GGCC	1 cut(s)	503
BspCNI	CTCAG	1 cut(s)	219
BspQI	GCTCTTC	1 cut(s)	453
BsrDI	GCAATG	2 cut(s)	210, 445
BsrI	ACTGG	2 cut(s)	396, 541
BssECI	CCNNGG	1 cut(s)	504
BssMI	GATC	2 cut(s)	197, 270
BssT1I	CCWWGG	1 cut(s)	504
Bst6I	CTCTTC	1 cut(s)	453
BstC8I	GCNNGC	1 cut(s)	239
BstDEI	CTNAG	1 cut(s)	227
BstDSI	CCRYGG	1 cut(s)	504
BstF5I	GGATG	2 cut(s)	264, 400
BstH2I	RGCGCY	1 cut(s)	143
BstHHI	GCGC	2 cut(s)	137, 142
BstKTI	GATC	2 cut(s)	200, 273
BstMBI	GATC	2 cut(s)	197, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNSI	RCATGY	1 cut(s)	377
BstV1I	GCAGC	5 cut(s)	59, 149, 253, 430, 496
BstV2I	GAAGAC	1 cut(s)	321
BsuRI	GGCC	1 cut(s)	503
BtgI	CCRYGG	1 cut(s)	504
BtrI	CACGTC	1 cut(s)	367
BtsCI	GGATG	2 cut(s)	264, 400
BtsIMutI	CAGTG	1 cut(s)	318
Cac8I	GCNNGC	1 cut(s)	239
CfoI	GCGC	2 cut(s)	137, 142
CviAII	CATG	2 cut(s)	374, 505
CviJI	RGCY	6 cut(s)	25, 72, 399, 503, 509, 529
CviKI_1	RGCY	6 cut(s)	25, 72, 399, 503, 509, 529
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	2 cut(s)	199, 272
DpnII	GATC	2 cut(s)	197, 270
EaeI	YGGCCR	1 cut(s)	501
Eam1104I	CTCTTC	1 cut(s)	453
EarI	CTCTTC	1 cut(s)	453
Eco130I	CCWWGG	1 cut(s)	504
Eco57I	CTGAAG	1 cut(s)	506
EcoT14I	CCWWGG	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	504
FaeI	CATG	2 cut(s)	377, 508
FaiI	YATR	6 cut(s)	38, 248, 375, 386, 435, 506
FatI	CATG	2 cut(s)	373, 504
FbaI	TGATCA	1 cut(s)	270
Fnu4HI	GCNGC	5 cut(s)	73, 138, 242, 444, 510
FokI	GGATG	2 cut(s)	271, 407
Fsp4HI	GCNGC	5 cut(s)	73, 138, 242, 444, 510
FspBI	CTAG	1 cut(s)	252
GlaI	GCGC	2 cut(s)	136, 141
GluI	GCNGC	5 cut(s)	73, 138, 242, 444, 510
GsuI	CTGGAG	1 cut(s)	70
HaeII	RGCGCY	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	503
HhaI	GCGC	2 cut(s)	137, 142
Hin1II	CATG	2 cut(s)	377, 508
Hin6I	GCGC	2 cut(s)	135, 140
HinP1I	GCGC	2 cut(s)	135, 140
HinfI	GANTC	5 cut(s)	10, 45, 66, 229, 354
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	1 cut(s)	307
Hpy188I	TCNGA	2 cut(s)	65, 486
Hpy188III	TCNNGA	2 cut(s)	226, 274
Hpy8I	GTNNAC	1 cut(s)	307
HpyAV	CCTTC	2 cut(s)	478, 483
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	3 cut(s)	75, 262, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpyF3I	CTNAG	1 cut(s)	227
HpySE526I	ACGT	1 cut(s)	366
Hsp92II	CATG	2 cut(s)	377, 508
HspAI	GCGC	2 cut(s)	135, 140
Ksp22I	TGATCA	1 cut(s)	270
Kzo9I	GATC	2 cut(s)	197, 270
LguI	GCTCTTC	1 cut(s)	453
LmnI	GCTCC	1 cut(s)	276
LpnPI	CCDG	5 cut(s)	100, 239, 259, 377, 539
Lsp1109I	GCAGC	5 cut(s)	59, 149, 253, 430, 496
LweI	GCATC	2 cut(s)	249, 288
MaeI	CTAG	1 cut(s)	252
MaeII	ACGT	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	2 cut(s)	199, 272
MboI	GATC	2 cut(s)	197, 270
MboII	GAAGA	3 cut(s)	195, 326, 440
MfeI	CAATTG	1 cut(s)	108
MlsI	TGGCCA	1 cut(s)	503
MluCI	AATT	3 cut(s)	108, 427, 491
MluNI	TGGCCA	1 cut(s)	503
MlyI	GAGTC	2 cut(s)	60, 238
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	8 cut(s)	15, 171, 174, 319, 462, 465, 540, 543
Mox20I	TGGCCA	1 cut(s)	503
MscI	TGGCCA	1 cut(s)	503
MslI	CAYNNNNRTG	1 cut(s)	438
Msp20I	TGGCCA	1 cut(s)	503
MteI	GCGCNGCGC	1 cut(s)	138
MunI	CAATTG	1 cut(s)	108
MwoI	GCNNNNNNNGC	1 cut(s)	509
NcoI	CCATGG	1 cut(s)	504
NdeII	GATC	2 cut(s)	197, 270
NlaIII	CATG	2 cut(s)	377, 508
NmeAIII	GCCGAG	2 cut(s)	48, 78
NmuCI	GTSAC	1 cut(s)	376
NspI	RCATGY	1 cut(s)	377
PciSI	GCTCTTC	1 cut(s)	453
PfeI	GAWTC	3 cut(s)	10, 45, 354
PkrI	GCNGC	5 cut(s)	74, 139, 243, 445, 511
PleI	GAGTC	2 cut(s)	60, 237
PpsI	GAGTC	2 cut(s)	60, 237
RseI	CAYNNNNRTG	1 cut(s)	438
SapI	GCTCTTC	1 cut(s)	453
SatI	GCNGC	5 cut(s)	73, 138, 242, 444, 510
Sau3AI	GATC	2 cut(s)	197, 270
SchI	GAGTC	2 cut(s)	60, 238
SetI	ASST	3 cut(s)	163, 196, 369
SfaNI	GCATC	2 cut(s)	249, 288
SmiMI	CAYNNNNRTG	1 cut(s)	438
SmlI	CTYRAG	2 cut(s)	165, 456
SmoI	CTYRAG	2 cut(s)	165, 456
Sse9I	AATT	3 cut(s)	108, 427, 491
SspI	AATATT	1 cut(s)	300
SspMI	CTAG	1 cut(s)	252
StyI	CCWWGG	1 cut(s)	504
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	1 cut(s)	476
TasI	AATT	3 cut(s)	108, 427, 491
TfiI	GAWTC	3 cut(s)	10, 45, 354
TscAI	CASTG	1 cut(s)	325
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	5 cut(s)	72, 137, 241, 443, 509
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	4 cut(s)	17, 209, 221, 422
TspGWI	ACGGA	1 cut(s)	377
TspRI	CASTG	1 cut(s)	325
XceI	RCATGY	1 cut(s)	377
XspI	CTAG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.