Prupe.1G177300_v2.0.a1

CRIB domain-containing protein RIC4-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012882
Physical Location & Seq
Forward (+)
15137429 .. 15139432
2004 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G177300.1

Sequence Viewer

Length: 606 bp
ATGGCTTCTGAGTCCAACAAAACAAGGCTTAGGCTTTGTAGTTTTGTCTATGAAGGGATGAAGGATCGCATGGAAAGATTTGCTGTTCTTCCTTTTGGCATTGGCTGCACTTCTCAGTCCAGCGTTGCCATAGGCACAAGTGATGATCAAACAAGAAAATCAAAAGCAGAAACACAAAACCCACCGCCACATGTAACAAACGATGGAAAAGCACAAGGAGCAAAAGTGAAGAACACTTATCGTTTTCTGAATCTTAGGAAGAGTCACATTTCCAGTGGATTTGAAAGATTGATCAGAAGCATCAAAAGTTTGTCTCAAATATTTGTTTACAAGGAAGAGATTGAGGAAGAAGAGGAGAGAGAGATGGAAATTGGGGTGCCTACAGATGTGAAGCATGTGACACACATAGGATTGGATGGGTCAACAACTACCAATACAACTGGATCCATAAAAGGCAGCTGGGAAAACTTCAACAGTGCTCCAGAAATACTCTCTTTCCCTTCAATTTCTTTAAAGCAGTTTGAGTTCGCCATGGCTGCACAGACCACCCACCAGCCTCAGCCGCTCCTTGTTGATGATCCAAAGACGCCCACAGATGTTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PBD

Protein Analysis

202

Amino Acids

22.4

Weight (kDa)

6.23

Isoelectric Point (pI)

44.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012882)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27380 AT1G27380 AT1G27380 AT1G27380
fragaria_vesca FvH4_4g12280
malus_domestica MD04G1027900.v1.1
prunus_persica Prupe.1G177300_v2.0.a1
pyrus_communis pycom04g02450
rosa_chinensis RchiOBHm_Chr4g0410351
rosa_laevigata RLG00000008435
rosa_roxburghii Rroxscaffold_5G00355150
rosa_rugosa Rorug04G0102200 Rorug04G0102200
rosa_samantha Rh4AG160200 Rh4BG159100 Rh4CG172300 Rh4DG155100
rosa_wichuraiana Rw4G013340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 376
AccBSI CCGCTC 1 cut(s) 565
AciI CCGC 2 cut(s) 185, 563
AclWI GGATC 4 cut(s) 72, 438, 451, 572
AcyI GRCGYC 1 cut(s) 587
AflIII ACRYGT 1 cut(s) 190
AgsI TTSAA 3 cut(s) 284, 472, 504
AluBI AGCT 1 cut(s) 459
AluI AGCT 1 cut(s) 459
Alw21I GWGCWC 1 cut(s) 481
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 4 cut(s) 72, 438, 451, 572
ApeKI GCWGC 3 cut(s) 105, 456, 536
BamHI GGATCC 1 cut(s) 443
BanI GGYRCC 1 cut(s) 376
Bbv12I GWGCWC 1 cut(s) 481
BbvCI CCTCAGC 1 cut(s) 558
BbvI GCAGC 3 cut(s) 92, 468, 523
BccI CCATC 3 cut(s) 197, 358, 410
BclI TGATCA 2 cut(s) 145, 291
BcoDI GTCTC 1 cut(s) 318
BfmI CTRYAG 1 cut(s) 381
BisI GCNGC 4 cut(s) 106, 457, 537, 563
BlsI GCNGC 4 cut(s) 107, 458, 538, 564
BmiI GGNNCC 2 cut(s) 378, 445
BmsI GCATC 1 cut(s) 309
BpmI CTGGAG 1 cut(s) 465
Bpu10I CCTNAGC 2 cut(s) 29, 558
BsaHI GRCGYC 1 cut(s) 587
BsaJI CCNNGG 1 cut(s) 531
BsaXI ACNNNNNCTCC 2 cut(s) 210, 240
Bse1I ACTGG 2 cut(s) 273, 445
BseDI CCNNGG 1 cut(s) 531
BseGI GGATG 2 cut(s) 63, 421
BseMII CTCAG 2 cut(s) 128, 572
BseNI ACTGG 2 cut(s) 273, 445
BseRI GAGGAG 1 cut(s) 368
BseXI GCAGC 3 cut(s) 92, 468, 523
BseYI CCCAGC 1 cut(s) 459
BsgI GTGCAG 2 cut(s) 91, 522
BshNI GGYRCC 1 cut(s) 376
BsiHKAI GWGCWC 1 cut(s) 481
BsmAI GTCTC 1 cut(s) 318
Bsp1286I GDGCHC 1 cut(s) 481
Bsp143I GATC 5 cut(s) 64, 145, 291, 443, 577
Bsp19I CCATGG 1 cut(s) 531
BspACI CCGC 2 cut(s) 185, 563
BspCNI CTCAG 2 cut(s) 127, 571
BspLI GGNNCC 2 cut(s) 378, 445
BspPI GGATC 4 cut(s) 72, 438, 451, 572
BspT107I GGYRCC 1 cut(s) 376
BsrBI CCGCTC 1 cut(s) 565
BsrI ACTGG 2 cut(s) 273, 445
BssECI CCNNGG 1 cut(s) 531
BssMI GATC 5 cut(s) 64, 145, 291, 443, 577
BssNI GRCGYC 1 cut(s) 587
BssT1I CCWWGG 1 cut(s) 531
Bst4CI ACNGT 1 cut(s) 476
Bst6I CTCTTC 3 cut(s) 254, 330, 345
BstACI GRCGYC 1 cut(s) 587
BstAPI GCANNNNNTGC 1 cut(s) 105
BstDEI CTNAG 5 cut(s) 9, 29, 114, 254, 558
BstDSI CCRYGG 1 cut(s) 531
BstF5I GGATG 2 cut(s) 63, 421
BstKTI GATC 5 cut(s) 67, 148, 294, 446, 580
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 5 cut(s) 64, 145, 291, 443, 577
BstMWI GCNNNNNNNGC 4 cut(s) 105, 218, 536, 562
BstNSI RCATGY 2 cut(s) 194, 398
BstSFI CTRYAG 1 cut(s) 381
BstV1I GCAGC 3 cut(s) 92, 468, 523
BstX2I RGATCY 1 cut(s) 443
BstYI RGATCY 1 cut(s) 443
BtgI CCRYGG 1 cut(s) 531
BtsCI GGATG 2 cut(s) 63, 421
BtsIMutI CAGTG 2 cut(s) 280, 481
CseI GACGC 1 cut(s) 595
CviAII CATG 4 cut(s) 70, 191, 395, 532
CviJI RGCY 8 cut(s) 5, 28, 34, 105, 459, 536, 556, 562
CviKI_1 RGCY 8 cut(s) 5, 28, 34, 105, 459, 536, 556, 562
DdeI CTNAG 5 cut(s) 9, 29, 114, 254, 558
DpnI GATC 5 cut(s) 66, 147, 293, 445, 579
DpnII GATC 5 cut(s) 64, 145, 291, 443, 577
DraI TTTAAA 1 cut(s) 513
Eam1104I CTCTTC 3 cut(s) 254, 330, 345
EarI CTCTTC 3 cut(s) 254, 330, 345
Eco130I CCWWGG 1 cut(s) 531
EcoT14I CCWWGG 1 cut(s) 531
ErhI CCWWGG 1 cut(s) 531
FaeI CATG 4 cut(s) 73, 194, 398, 535
FaiI YATR 8 cut(s) 51, 71, 131, 192, 396, 407, 449, 533
FatI CATG 4 cut(s) 69, 190, 394, 531
FbaI TGATCA 2 cut(s) 145, 291
Fnu4HI GCNGC 4 cut(s) 106, 457, 537, 563
FokI GGATG 2 cut(s) 70, 428
Fsp4HI GCNGC 4 cut(s) 106, 457, 537, 563
GluI GCNGC 4 cut(s) 106, 457, 537, 563
GsaI CCCAGC 1 cut(s) 463
GsuI CTGGAG 1 cut(s) 465
HgaI GACGC 1 cut(s) 595
Hin1I GRCGYC 1 cut(s) 587
Hin1II CATG 4 cut(s) 73, 194, 398, 535
HincII GTYRAC 2 cut(s) 423, 601
HindII GTYRAC 2 cut(s) 423, 601
HinfI GANTC 3 cut(s) 11, 250, 262
HpaI GTTAAC 1 cut(s) 601
Hpy166II GTNNAC 3 cut(s) 328, 423, 601
Hpy188I TCNGA 3 cut(s) 10, 249, 296
Hpy188III TCNNGA 1 cut(s) 482
Hpy8I GTNNAC 3 cut(s) 328, 423, 601
HpyAV CCTTC 3 cut(s) 47, 55, 510
HpyCH4III ACNGT 1 cut(s) 476
HpyCH4V TGCA 2 cut(s) 108, 539
HpyF10VI GCNNNNNNNGC 4 cut(s) 105, 218, 536, 562
HpyF3I CTNAG 5 cut(s) 9, 29, 114, 254, 558
Hsp92I GRCGYC 1 cut(s) 587
Hsp92II CATG 4 cut(s) 73, 194, 398, 535
Ksp22I TGATCA 2 cut(s) 145, 291
KspAI GTTAAC 1 cut(s) 601
Kzo9I GATC 5 cut(s) 64, 145, 291, 443, 577
LmnI GCTCC 3 cut(s) 218, 484, 570
LpnPI CCDG 6 cut(s) 133, 286, 426, 445, 495, 566
Lsp1109I GCAGC 3 cut(s) 92, 468, 523
LweI GCATC 1 cut(s) 309
MaeIII GTNAC 3 cut(s) 193, 263, 397
MalI GATC 5 cut(s) 66, 147, 293, 445, 579
MbiI CCGCTC 1 cut(s) 565
MboI GATC 5 cut(s) 64, 145, 291, 443, 577
MboII GAAGA 6 cut(s) 80, 241, 271, 347, 359, 362
MflI RGATCY 1 cut(s) 443
MhlI GDGCHC 1 cut(s) 481
MluCI AATT 2 cut(s) 369, 504
MlyI GAGTC 2 cut(s) 20, 271
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 3 cut(s) 337, 346, 567
MseI TTAA 2 cut(s) 512, 600
MspA1I CMGCKG 1 cut(s) 459
MwoI GCNNNNNNNGC 4 cut(s) 105, 218, 536, 562
NcoI CCATGG 1 cut(s) 531
NdeII GATC 5 cut(s) 64, 145, 291, 443, 577
NlaIII CATG 4 cut(s) 73, 194, 398, 535
NlaIV GGNNCC 2 cut(s) 378, 445
NmuCI GTSAC 2 cut(s) 263, 397
NspI RCATGY 2 cut(s) 194, 398
PciI ACATGT 1 cut(s) 190
PfeI GAWTC 1 cut(s) 250
PkrI GCNGC 4 cut(s) 107, 458, 538, 564
PleI GAGTC 2 cut(s) 19, 270
PpsI GAGTC 2 cut(s) 19, 270
PscI ACATGT 1 cut(s) 190
PspFI CCCAGC 1 cut(s) 459
PspN4I GGNNCC 2 cut(s) 378, 445
PsuI RGATCY 1 cut(s) 443
PvuII CAGCTG 1 cut(s) 459
SaqAI TTAA 2 cut(s) 512, 600
SatI GCNGC 4 cut(s) 106, 457, 537, 563
Sau3AI GATC 5 cut(s) 64, 145, 291, 443, 577
SchI GAGTC 2 cut(s) 20, 271
SduI GDGCHC 1 cut(s) 481
SetI ASST 1 cut(s) 461
SfaNI GCATC 1 cut(s) 309
SfcI CTRYAG 1 cut(s) 381
Sse9I AATT 2 cut(s) 369, 504
SsiI CCGC 2 cut(s) 185, 563
SspI AATATT 1 cut(s) 321
StyI CCWWGG 1 cut(s) 531
TaaI ACNGT 1 cut(s) 476
TasI AATT 2 cut(s) 369, 504
TauI GCSGC 1 cut(s) 565
TfiI GAWTC 1 cut(s) 250
Tru1I TTAA 2 cut(s) 512, 600
Tru9I TTAA 2 cut(s) 512, 600
TscAI CASTG 2 cut(s) 280, 481
TseFI GTSAC 2 cut(s) 263, 397
TseI GCWGC 3 cut(s) 105, 456, 536
Tsp45I GTSAC 2 cut(s) 263, 397
TspDTI ATGAA 2 cut(s) 66, 74
TspRI CASTG 2 cut(s) 280, 481
XceI RCATGY 2 cut(s) 194, 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.