AT1G28240

Protein of unknown function (DUF616)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
9868257 .. 9872278
4022 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G28240.1

Sequence Viewer

Length: 1746 bp
ATGACTGGATTGGGTGTTCGATCCAGTAGCTATGGTTCCTTGGAGAAGACGGGACTTAACGGCGTCGTTTTACCTATCCAGATCACTACCACGACGCGTACCAAACCATCTAAGATGCAGAAAGATAGAGAAGGTATTGTACATTGGATCTGCAAATTCGCTGGTCGTAAGAAGGTTGGCATGTTGCTTCTCTTCTTAATCTCCGCCGTCGTCTTCCTTCGCGTCCTTTACGTCGGAAAAGGTGAAGATAGTCAGGAAGGTCAAGGTCCTCCGAGTCTTCATTTCAATGGCAGTTCAGGCGTAAATTATTCAAATATGTTACAAACAAATGAAGAGCTAAACATGAATATTGGAAATATATCGTTCAAGGCAAAAGAAGTTATTGTGTTCCCTCCTCCTCCTATACATTTTCTTGGTTATTCGCTTCCTCAAGGTCATCCTTGTAACAGTTTCACTTTACCTCCCCCACCAGCAGACAGGAAAAGAACAGGACCACGCCCATGCCCGGTATGTTACCTTCCAGTAGAAGAAGCAGTTGCCTTGATGCCAAATGCCCCATCATTTTCCCCTGTTCTTAAGAACTTAACGTATATATATGAAGAACCGTTAAACAGAGAGACAGAGTTTGGAGGGTCAGATTTTGGTGGTTATCCTACTTTGAAACATAGGAATGATTCTTTTGACATTAAAGAAACAATGAGTGTACATTGTGGGTTTGTCAAAGGACCTCAACCTGGTCGAAATACAGGATTTGACATTGATGAGGCAGATCTTCTTGAAATGAAGCAGTGTCGTGGGATAGTTGTTGCTTCAGCAGTATTTGATGCTTTTGATGATGTAAAAGCCCCACAAAATATCAGTAAATATGCGGAGGAAACAGTTTGCTTCTACATGTTTGTTGATGAAGAGACTGAATCAATTTTGAAGAGAGAACGAGGCCTTGATGGCAATAAGAAAGTAGGGATATGGAGAGTTGTTGTTGTTCATAATCTCCCCTATTCAGATGGAAGGCGCAATGGAAAGGTGCCCAAGCTTCTTGTCCATAGGATGTTTCCAAATGCTCGCTATTCTTTATGGATTGACGGAAAACTAGAACTTGTCGTCGATCCATATCAAATTCTTGAAAGATTCTTGTGGAGGAAAAATGCTACTTTTGCTATTTCTAGACATTACAAACGATTTGATGTCTTAGTGGAAGCCGAAGCAAATAAAGCTGCTGGTAAATATGATAATGCTTCTATCGACTTTCAAGTGGATTTTTACAAGAACGAAGGGTTAACCCCTTATTCTGTCGCAAAGCTCCCAATCACAAGCGACGTACCCGAGGGTTGTGTCATTTTAAGAGAGCATGTTCCCATAAGCAACCTCTTCACTTGTCTTTGGTTCAACGAAGTTGACCGATTCACTTCTAGAGATCAAATCAGTTTCTCAACAGTAAGAGATAAGATCGCAGCAAAAACAAACTGGACAGTAAGCATGTTCCTTGATTGTGAAAGACGCAATTTTGTAGTTCAGAGATATCACCGAGCAGAACAAGAAAGATTTGCAAGGCAACGACCTCCGGTGCCTAATTTTCCTCCTCCACCACCTTCGCCGCCTCCACCAGTTTTAATCAGCAGCGATTTGCCTAGAAAAATGTCAAGTGGAAGAGCAACGCCGCCTAGAAGACGAGGAAGAGACAGACGGTCTGGTCAAAGGGGTCACAGGAAAGCTAACTTGCCAGTAAGATTACCAGATTCAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

581

Amino Acids

65.58

Weight (kDa)

9.33

Isoelectric Point (pI)

51.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TOD1_MUCI70 PF04765 195 - 508 2.9e-151 TOD1/MUCI70, glycosyltransferase-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0011139)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1689
AccB1I GGYRCC 2 cut(s) 1024, 1564
AccII CGCG 2 cut(s) 97, 222
AciI CCGC 4 cut(s) 204, 869, 1595, 1658
AclWI GGATC 3 cut(s) 15, 155, 1100
AcsI RAATTY 2 cut(s) 155, 1116
AcuI CTGAAG 1 cut(s) 795
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 4 cut(s) 100, 141, 705, 1320
AfiI CCNNNNNNNGG 2 cut(s) 505, 734
AflII CTTAAG 1 cut(s) 575
AflIII ACRYGT 2 cut(s) 95, 891
AgsI TTSAA 9 cut(s) 286, 312, 367, 661, 779, 925, 1124, 1250, 1387
AhdI GACNNNNNGTC 1 cut(s) 1684
AjnI CCWGG 1 cut(s) 733
AloI GAACNNNNNNTCC 1 cut(s) 32
AluBI AGCT 7 cut(s) 30, 337, 1033, 1214, 1300, 1712, 1742
AluI AGCT 7 cut(s) 30, 337, 1033, 1214, 1300, 1712, 1742
Alw26I GTCTC 3 cut(s) 611, 902, 1671
AlwI GGATC 3 cut(s) 15, 155, 1100
Ama87I CYCGRG 1 cut(s) 1322
AoxI GGCC 1 cut(s) 937
ApeKI GCWGC 3 cut(s) 1214, 1451, 1617
ApoI RAATTY 2 cut(s) 155, 1116
AspLEI GCGC 1 cut(s) 1014
AspS9I GGNCC 3 cut(s) 266, 491, 725
AsuC2I CCSGG 1 cut(s) 506
AsuHPI GGTGA 2 cut(s) 254, 1514
AvaI CYCGRG 1 cut(s) 1322
AvaII GGWCC 3 cut(s) 266, 491, 725
BaeGI GKGCMC 1 cut(s) 1029
BanI GGYRCC 2 cut(s) 1024, 1564
BarI GAAGNNNNNNTAC 4 cut(s) 123, 155, 501, 533
BbsI GAAGAC 4 cut(s) 53, 205, 269, 1672
BbvI GCAGC 3 cut(s) 1201, 1463, 1629
BccI CCATC 4 cut(s) 115, 565, 938, 998
BceAI ACGGC 2 cut(s) 76, 191
BciT130I CCWGG 1 cut(s) 735
BcnI CCSGG 1 cut(s) 506
BcoDI GTCTC 3 cut(s) 611, 902, 1671
BfaI CTAG 5 cut(s) 1091, 1164, 1410, 1629, 1662
BfrI CTTAAG 1 cut(s) 575
BglI GCCNNNNNGGC 1 cut(s) 945
BglII AGATCT 1 cut(s) 769
BisI GCNGC 5 cut(s) 1215, 1452, 1595, 1618, 1658
BlsI GCNGC 5 cut(s) 1216, 1453, 1596, 1619, 1659
Bme1390I CCNGG 2 cut(s) 506, 735
Bme18I GGWCC 3 cut(s) 266, 491, 725
BmeRI GACNNNNNGTC 1 cut(s) 1684
BmeT110I CYCGRG 1 cut(s) 1322
BmgT120I GGNCC 3 cut(s) 266, 491, 725
BmiI GGNNCC 3 cut(s) 37, 1026, 1566
BmrFI CCNGG 2 cut(s) 506, 735
BmsI GCATC 3 cut(s) 105, 534, 814
BpiI GAAGAC 4 cut(s) 53, 205, 269, 1672
BpuEI CTTGAG 1 cut(s) 414
BpuMI CCSGG 1 cut(s) 506
BsaBI GATNNNNATC 1 cut(s) 1110
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 39, 1323
BsaWI WCCGGW 1 cut(s) 1561
BsaXI ACNNNNNCTCC 2 cut(s) 445, 475
Bsc4I CCNNNNNNNGG 2 cut(s) 505, 734
Bse1I ACTGG 6 cut(s) 10, 24, 521, 1469, 1604, 1721
Bse3DI GCAATG 1 cut(s) 1021
Bse8I GATNNNNATC 1 cut(s) 1110
BseBI CCWGG 1 cut(s) 735
BseDI CCNNGG 2 cut(s) 39, 1323
BseGI GGATG 2 cut(s) 436, 1053
BseJI GATNNNNATC 1 cut(s) 1110
BseLI CCNNNNNNNGG 2 cut(s) 505, 734
BseMI GCAATG 1 cut(s) 1021
BseNI ACTGG 6 cut(s) 10, 24, 521, 1469, 1604, 1721
BseRI GAGGAG 3 cut(s) 384, 387, 1569
BseSI GKGCMC 1 cut(s) 1029
BseXI GCAGC 3 cut(s) 1201, 1463, 1629
Bsh1236I CGCG 2 cut(s) 97, 222
BshFI GGCC 1 cut(s) 939
BshNI GGYRCC 2 cut(s) 1024, 1564
BsiHKCI CYCGRG 1 cut(s) 1322
BsiSI CCGG 2 cut(s) 506, 1562
BslFI GGGAC 1 cut(s) 66
BslI CCNNNNNNNGG 2 cut(s) 505, 734
BsmAI GTCTC 3 cut(s) 611, 902, 1671
BsmFI GGGAC 1 cut(s) 66
BsnI GGCC 1 cut(s) 939
BsoBI CYCGRG 1 cut(s) 1322
Bsp1286I GDGCHC 1 cut(s) 1029
Bsp1407I TGTACA 2 cut(s) 139, 703
Bsp143I GATC 7 cut(s) 20, 81, 147, 769, 1105, 1414, 1446
BspACI CCGC 4 cut(s) 204, 869, 1595, 1658
BspANI GGCC 1 cut(s) 939
BspFNI CGCG 2 cut(s) 97, 222
BspLI GGNNCC 3 cut(s) 37, 1026, 1566
BspPI GGATC 3 cut(s) 15, 155, 1100
BspQI GCTCTTC 2 cut(s) 327, 1642
BspT107I GGYRCC 2 cut(s) 1024, 1564
BspTI CTTAAG 1 cut(s) 575
BsrDI GCAATG 1 cut(s) 1021
BsrGI TGTACA 2 cut(s) 139, 703
BsrI ACTGG 6 cut(s) 10, 24, 521, 1469, 1604, 1721
BssECI CCNNGG 2 cut(s) 39, 1323
BssMI GATC 7 cut(s) 20, 81, 147, 769, 1105, 1414, 1446
BssNI GRCGYC 1 cut(s) 63
BssT1I CCWWGG 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 735
Bst4CI ACNGT 6 cut(s) 449, 606, 880, 1435, 1471, 1686
Bst6I CTCTTC 7 cut(s) 197, 327, 900, 920, 1373, 1642, 1669
BstACI GRCGYC 1 cut(s) 63
BstAFI CTTAAG 1 cut(s) 575
BstAUI TGTACA 2 cut(s) 139, 703
BstC8I GCNNGC 1 cut(s) 1063
BstDEI CTNAG 2 cut(s) 111, 1189
BstF5I GGATG 2 cut(s) 436, 1053
BstFNI CGCG 2 cut(s) 97, 222
BstHHI GCGC 1 cut(s) 1014
BstKTI GATC 7 cut(s) 23, 84, 150, 772, 1108, 1417, 1449
BstMAI GTCTC 3 cut(s) 611, 902, 1671
BstMBI GATC 7 cut(s) 20, 81, 147, 769, 1105, 1414, 1446
BstMWI GCNNNNNNNGC 4 cut(s) 297, 945, 1154, 1211
BstNI CCWGG 1 cut(s) 735
BstNSI RCATGY 4 cut(s) 184, 895, 1352, 1480
BstSCI CCNGG 2 cut(s) 504, 733
BstSLI GKGCMC 1 cut(s) 1029
BstUI CGCG 2 cut(s) 97, 222
BstV1I GCAGC 3 cut(s) 1201, 1463, 1629
BstV2I GAAGAC 4 cut(s) 53, 205, 269, 1672
BstX2I RGATCY 2 cut(s) 147, 769
BstYI RGATCY 2 cut(s) 147, 769
BsuRI GGCC 1 cut(s) 939
BtsCI GGATG 2 cut(s) 436, 1053
BtsI GCAGTG 1 cut(s) 794
BtsIMutI CAGTG 1 cut(s) 794
Cac8I GCNNGC 1 cut(s) 1063
CfoI GCGC 1 cut(s) 1014
Cfr13I GGNCC 3 cut(s) 266, 491, 725
CseI GACGC 4 cut(s) 52, 103, 211, 1506
CsiI ACCWGGT 1 cut(s) 733
Csp6I GTAC 4 cut(s) 99, 140, 704, 1319
CviAII CATG 6 cut(s) 181, 343, 501, 892, 1349, 1477
CviQI GTAC 4 cut(s) 99, 140, 704, 1319
DdeI CTNAG 2 cut(s) 111, 1189
DpnI GATC 7 cut(s) 22, 83, 149, 771, 1107, 1416, 1448
DpnII GATC 7 cut(s) 20, 81, 147, 769, 1105, 1414, 1446
DrdI GACNNNNNNGTC 1 cut(s) 1689
DriI GACNNNNNGTC 1 cut(s) 1684
DseDI GACNNNNNNGTC 1 cut(s) 1689
Eam1104I CTCTTC 7 cut(s) 197, 327, 900, 920, 1373, 1642, 1669
Eam1105I GACNNNNNGTC 1 cut(s) 1684
EarI CTCTTC 7 cut(s) 197, 327, 900, 920, 1373, 1642, 1669
EciI GGCGGA 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 39
Eco147I AGGCCT 1 cut(s) 939
Eco32I GATATC 1 cut(s) 1520
Eco47I GGWCC 3 cut(s) 266, 491, 725
Eco57I CTGAAG 1 cut(s) 795
Eco88I CYCGRG 1 cut(s) 1322
EcoO109I RGGNCCY 2 cut(s) 266, 725
EcoRII CCWGG 1 cut(s) 733
EcoRV GATATC 1 cut(s) 1520
EcoT14I CCWWGG 1 cut(s) 39
ErhI CCWWGG 1 cut(s) 39
FaeI CATG 6 cut(s) 184, 346, 504, 895, 1352, 1480
FaqI GGGAC 1 cut(s) 66
FatI CATG 6 cut(s) 180, 342, 500, 891, 1348, 1476
Fnu4HI GCNGC 5 cut(s) 1215, 1452, 1595, 1618, 1658
FokI GGATG 2 cut(s) 423, 1060
Fsp4HI GCNGC 5 cut(s) 1215, 1452, 1595, 1618, 1658
FspBI CTAG 5 cut(s) 1091, 1164, 1410, 1629, 1662
GlaI GCGC 1 cut(s) 1013
GluI GCNGC 5 cut(s) 1215, 1452, 1595, 1618, 1658
HaeIII GGCC 1 cut(s) 939
HapII CCGG 2 cut(s) 506, 1562
HgaI GACGC 4 cut(s) 52, 103, 211, 1506
HhaI GCGC 1 cut(s) 1014
Hin1I GRCGYC 1 cut(s) 63
Hin1II CATG 6 cut(s) 184, 346, 504, 895, 1352, 1480
Hin6I GCGC 1 cut(s) 1012
HinP1I GCGC 1 cut(s) 1012
HincII GTYRAC 2 cut(s) 1278, 1396
HindII GTYRAC 2 cut(s) 1278, 1396
HindIII AAGCTT 1 cut(s) 1031
HinfI GANTC 6 cut(s) 274, 674, 914, 1128, 1401, 1736
HpaI GTTAAC 1 cut(s) 1278
HpaII CCGG 2 cut(s) 506, 1562
HphI GGTGA 2 cut(s) 254, 1514
Hpy166II GTNNAC 3 cut(s) 704, 1278, 1396
Hpy188I TCNGA 5 cut(s) 236, 273, 637, 1003, 1515
Hpy188III TCNNGA 6 cut(s) 79, 254, 776, 1121, 1164, 1410
Hpy8I GTNNAC 3 cut(s) 704, 1278, 1396
Hpy99I CGWCG 6 cut(s) 68, 97, 212, 236, 1106, 1319
HpyAV CCTTC 8 cut(s) 125, 166, 227, 251, 527, 1002, 1265, 1599
HpyCH4III ACNGT 6 cut(s) 449, 606, 880, 1435, 1471, 1686
HpyCH4IV ACGT 3 cut(s) 231, 587, 1317
HpyCH4V TGCA 3 cut(s) 118, 153, 1547
HpyF10VI GCNNNNNNNGC 4 cut(s) 297, 945, 1154, 1211
HpyF3I CTNAG 2 cut(s) 111, 1189
HpySE526I ACGT 3 cut(s) 231, 587, 1317
Hsp92I GRCGYC 1 cut(s) 63
Hsp92II CATG 6 cut(s) 184, 346, 504, 895, 1352, 1480
HspAI GCGC 1 cut(s) 1012
KspAI GTTAAC 1 cut(s) 1278
Kzo9I GATC 7 cut(s) 20, 81, 147, 769, 1105, 1414, 1446
LguI GCTCTTC 2 cut(s) 327, 1642
LmnI GCTCC 1 cut(s) 1305
Lsp1109I GCAGC 3 cut(s) 1201, 1463, 1629
LweI GCATC 3 cut(s) 105, 534, 814
MabI ACCWGGT 1 cut(s) 733
MaeI CTAG 5 cut(s) 1091, 1164, 1410, 1629, 1662
MaeII ACGT 3 cut(s) 231, 587, 1317
MaeIII GTNAC 4 cut(s) 318, 443, 512, 1700
MalI GATC 7 cut(s) 22, 83, 149, 771, 1107, 1416, 1448
MboI GATC 7 cut(s) 20, 81, 147, 769, 1105, 1414, 1446
MflI RGATCY 2 cut(s) 147, 769
MhlI GDGCHC 1 cut(s) 1029
MluCI AATT 6 cut(s) 155, 304, 918, 1116, 1501, 1570
MluI ACGCGT 1 cut(s) 95
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 1 cut(s) 214
MslI CAYNNNNRTG 3 cut(s) 285, 499, 669
MspCI CTTAAG 1 cut(s) 575
MspI CCGG 2 cut(s) 506, 1562
MspR9I CCNGG 2 cut(s) 506, 735
MvaI CCWGG 1 cut(s) 735
MvnI CGCG 2 cut(s) 97, 222
MwoI GCNNNNNNNGC 4 cut(s) 297, 945, 1154, 1211
NciI CCSGG 1 cut(s) 506
NdeII GATC 7 cut(s) 20, 81, 147, 769, 1105, 1414, 1446
NlaIII CATG 6 cut(s) 184, 346, 504, 895, 1352, 1480
NlaIV GGNNCC 3 cut(s) 37, 1026, 1566
NmuCI GTSAC 1 cut(s) 1700
NspI RCATGY 4 cut(s) 184, 895, 1352, 1480
PceI AGGCCT 1 cut(s) 939
PciI ACATGT 1 cut(s) 891
PciSI GCTCTTC 2 cut(s) 327, 1642
PfeI GAWTC 5 cut(s) 674, 914, 1128, 1401, 1736
PkrI GCNGC 5 cut(s) 1216, 1453, 1596, 1619, 1659
PleI GAGTC 1 cut(s) 282
PpsI GAGTC 1 cut(s) 282
PpuMI RGGWCCY 2 cut(s) 266, 725
PscI ACATGT 1 cut(s) 891
Psp5II RGGWCCY 2 cut(s) 266, 725
Psp6I CCWGG 1 cut(s) 733
PspGI CCWGG 1 cut(s) 733
PspN4I GGNNCC 3 cut(s) 37, 1026, 1566
PspPI GGNCC 3 cut(s) 266, 491, 725
PspPPI RGGWCCY 2 cut(s) 266, 725
PsrI GAACNNNNNNTAC 2 cut(s) 19, 51
PsuI RGATCY 2 cut(s) 147, 769
RsaI GTAC 4 cut(s) 100, 141, 705, 1320
RsaNI GTAC 4 cut(s) 99, 140, 704, 1319
RseI CAYNNNNRTG 3 cut(s) 285, 499, 669
SapI GCTCTTC 2 cut(s) 327, 1642
SatI GCNGC 5 cut(s) 1215, 1452, 1595, 1618, 1658
Sau3AI GATC 7 cut(s) 20, 81, 147, 769, 1105, 1414, 1446
Sau96I GGNCC 3 cut(s) 266, 491, 725
SchI GAGTC 1 cut(s) 283
ScrFI CCNGG 2 cut(s) 506, 735
SduI GDGCHC 1 cut(s) 1029
SexAI ACCWGGT 1 cut(s) 733
SfaNI GCATC 3 cut(s) 105, 534, 814
SinI GGWCC 3 cut(s) 266, 491, 725
SmiMI CAYNNNNRTG 3 cut(s) 285, 499, 669
SmlI CTYRAG 2 cut(s) 429, 575
SmoI CTYRAG 2 cut(s) 429, 575
Sse9I AATT 6 cut(s) 155, 304, 918, 1116, 1501, 1570
SseBI AGGCCT 1 cut(s) 939
SsiI CCGC 4 cut(s) 204, 869, 1595, 1658
SspI AATATT 1 cut(s) 349
SspMI CTAG 5 cut(s) 1091, 1164, 1410, 1629, 1662
StuI AGGCCT 1 cut(s) 939
StyD4I CCNGG 2 cut(s) 504, 733
StyI CCWWGG 1 cut(s) 39
TaaI ACNGT 6 cut(s) 449, 606, 880, 1435, 1471, 1686
TaiI ACGT 3 cut(s) 234, 590, 1320
TaqI TCGA 4 cut(s) 19, 739, 1104, 1242
TaqII GACCGA 1 cut(s) 1413
TasI AATT 6 cut(s) 155, 304, 918, 1116, 1501, 1570
TatI WGTACW 2 cut(s) 139, 703
TauI GCSGC 2 cut(s) 1597, 1660
TfiI GAWTC 5 cut(s) 674, 914, 1128, 1401, 1736
TscAI CASTG 1 cut(s) 794
TseFI GTSAC 1 cut(s) 1700
TseI GCWGC 3 cut(s) 1214, 1451, 1617
Tsp45I GTSAC 1 cut(s) 1700
TspDTI ATGAA 7 cut(s) 269, 345, 359, 612, 797, 918, 974
TspGWI ACGGA 1 cut(s) 1098
TspRI CASTG 1 cut(s) 794
Vha464I CTTAAG 1 cut(s) 575
VpaK11BI GGWCC 3 cut(s) 266, 491, 725
XapI RAATTY 2 cut(s) 155, 1116
XbaI TCTAGA 2 cut(s) 1163, 1409
XceI RCATGY 4 cut(s) 184, 895, 1352, 1480
XspI CTAG 5 cut(s) 1091, 1164, 1410, 1629, 1662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.