AT1G29260

Peroxisome biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015051
Physical Location & Seq
Forward (+)
10224815 .. 10226322
1508 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G29260.1

Sequence Viewer

Length: 954 bp
ATGCCGGTGTTCAAAGCTCCGTTCAATGGCTACTCTGTGAAATTCAGTCCATTCTACGAGTCACGCCTCGCCGTCGCTACAGCTCAGAACTTCGGAATTCTCGGAAACGGCCGAATCCATGTCCTCGAGCTCGCTCCTGGAGCTCCAGGCGTAACTGAATCCGTCTCGTACGATACAGCCGACGCTGTATACGACGTATGTTGGTCAGAATCTCATGACTCTGTGCTCATCGCCGCAATTGGTGACGGCTCAGTGAAGATTTACGACACAGCTCTTCCTCCTCCTTCTAATCCGATTAGATCATTCCAAGAGCACGCGCGTGAGGTTCAATCTGTGGATTACAATCCCACGCGGCGCGATTCGTTTCTCACTTCTTCGTGGGATGATACGGTTAAGCTTTGGGCTATGGATCGTCCGGCGAGTGTAAGGACTTTTAAGGAACATGCTTATTGCGTTTATCAAGCAGTTTGGAATCCTAAACATGGTGATGTGTTTGCTTCTGCTTCTGGAGATTGTACTTTAAGGATTTGGGATGTTAGAGAACCTGGATCAACTATGATCATCCCTGCTCATGATTTTGAGATTTTGTCTTGTGATTGGAATAAGTATGATGATTGTATTTTAGCTACTTCTTCAGTGGATAAGACAGTTAAGGTTTGGGATGTTAGGAGTTATAGAGTTCCTTTGGCTGTGCTTAATGGTCATGGATATGCGGTGAGGAAGGTGAAATTCTCGCCGCATAGGAGGAGTTTGATAGCTTCTTGCTCTTATGATATGAGTGTTTGTCTTTGGGACTATATGGTGGAAGATGCTTTGGTTGGTAGGTATGATCATCATACAGAGTTTGCTGTTGGGATCGATATGAGTGTTCTTGTTGAAGGTTTAATGGCGAGTACTGGTTGGGATGAGCTTGTTTATGTTTGGCAGCAAGGGATGGATCCTAGAGCCAGTTGA

Protein Analysis

317

Amino Acids

35.47

Weight (kDa)

5.23

Isoelectric Point (pI)

48.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_WDHD1_1st PF24817 57 - 147 4.1e-06 WDHD1 first WD40 domain
WDR55 PF24796 59 - 226 1.5e-10 WDR55
WD40_CDC20-Fz PF24807 59 - 180 4.7e-11 CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st PF25173 59 - 222 2.2e-18 WDR3 first beta-propeller domain
Beta-prop_WDR5 PF25175 60 - 180 3.4e-17 WDR5 beta-propeller domain
WD40_Gbeta PF25391 61 - 192 3.6e-06 G protein beta WD-40 repeat protein
Beta-prop_EIPR1 PF23609 61 - 134 7.4e-06 EIPR1 beta-propeller
WD40_Prp19 PF24814 63 - 265 3.2e-22 Prp19 WD40 domain
Beta-prop_Aladin PF25460 66 - 225 5.2e-06 Aladin seven-bladed propeller
Beta-prop_WDR3_2nd PF25172 70 - 178 4.2e-07 WDR3 second beta-propeller domain
Beta-prop_WDR5 PF25175 75 - 309 9.2e-34 WDR5 beta-propeller domain
Beta-prop_THOC3 PF25174 105 - 309 3.9e-28 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 129 - 268 6.6e-19 CDC20/Fizzy WD40 domain
Beta-prop_EIPR1 PF23609 151 - 264 3.1e-15 EIPR1 beta-propeller
WD40_WDHD1_1st PF24817 160 - 225 2.9e-06 WDHD1 first WD40 domain
Beta-prop_TEP1_2nd PF25047 160 - 242 1.4e-06 TEP-1 second beta-propeller
Beta-prop_EML_2 PF23414 163 - 308 1.4e-09 Echinoderm microtubule-associated protein second beta-propeller
WD40_MABP1-WDR62_2nd PF24782 163 - 288 8.6e-11 MABP1/WDR62 second WD40 domain
Beta-prop_WDR36-Utp21_2nd PF25168 167 - 310 4.2e-06 WDR36/Utp21 second beta-propeller domain
Beta-prop_WDR3_2nd PF25172 191 - 312 1.3e-06 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 194 - 283 1.6e-09 Prp19 WD40 domain
Beta-prop_TEP1_2nd PF25047 194 - 310 1e-07 TEP-1 second beta-propeller
Beta-prop_WDR3_1st PF25173 206 - 309 1.7e-11 WDR3 first beta-propeller domain
WD40 PF00400 228 - 265 2.1e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29260
fragaria_vesca FvH4_3g07730
malus_domestica MD05G1300300.v1.1 MD10G1279400.v1.1
prunus_persica Prupe.4G062000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0010881
rosa_laevigata RLG00000031794
rosa_multiflora Rmu_sc0000109.1_g000002
rosa_roxburghii Rroxscaffold_1G00065480
rosa_rugosa Rorug04G0453500
rosa_samantha Rh5AG086200 Rh5BG080400 Rh5CG092900 Rh5DG080600
rosa_wichuraiana Rw0G017460 Rw0G017910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 189
AccII CGCG 4 cut(s) 317, 319, 352, 357
AciI CCGC 4 cut(s) 234, 352, 713, 737
AclWI GGATC 5 cut(s) 417, 556, 863, 932, 945
AcoI YGGCCR 1 cut(s) 109
AcsI RAATTY 3 cut(s) 41, 96, 728
AcuI CTGAAG 1 cut(s) 618
AfaI GTAC 3 cut(s) 170, 517, 895
AfiI CCNNNNNNNGG 2 cut(s) 26, 482
AgsI TTSAA 4 cut(s) 13, 25, 329, 878
AjnI CCWGG 3 cut(s) 136, 145, 544
AleI CACNNNNGTG 1 cut(s) 318
AluBI AGCT 9 cut(s) 17, 83, 130, 143, 272, 397, 626, 758, 910
AluI AGCT 9 cut(s) 17, 83, 130, 143, 272, 397, 626, 758, 910
Alw21I GWGCWC 4 cut(s) 132, 145, 228, 315
Alw26I GTCTC 1 cut(s) 169
AlwI GGATC 5 cut(s) 417, 556, 863, 932, 945
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 1 cut(s) 109
ApeKI GCWGC 1 cut(s) 925
ApoI RAATTY 3 cut(s) 41, 96, 728
AspLEI GCGC 2 cut(s) 319, 357
AsuHPI GGTGA 4 cut(s) 254, 497, 727, 736
AvaI CYCGRG 1 cut(s) 125
BamHI GGATCC 1 cut(s) 937
BanII GRGCYC 2 cut(s) 132, 145
Bbv12I GWGCWC 4 cut(s) 132, 145, 228, 315
BbvI GCAGC 1 cut(s) 937
BccI CCATC 1 cut(s) 928
BceAI ACGGC 3 cut(s) 56, 124, 262
BciT130I CCWGG 3 cut(s) 138, 147, 546
BclI TGATCA 2 cut(s) 558, 829
BcoDI GTCTC 1 cut(s) 169
BfaI CTAG 1 cut(s) 942
BfmI CTRYAG 1 cut(s) 78
BisI GCNGC 4 cut(s) 234, 353, 737, 926
BlsI GCNGC 4 cut(s) 235, 354, 738, 927
BmcAI AGTACT 1 cut(s) 895
Bme1390I CCNGG 3 cut(s) 138, 147, 546
BmeT110I CYCGRG 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 939
BmrFI CCNGG 3 cut(s) 138, 147, 546
BmsI GCATC 1 cut(s) 799
BpmI CTGGAG 3 cut(s) 129, 159, 528
Bsa29I ATCGAT 1 cut(s) 858
BsaBI GATNNNNATC 1 cut(s) 342
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 482
Bse118I RCCGGY 1 cut(s) 4
Bse1I ACTGG 2 cut(s) 901, 948
Bse8I GATNNNNATC 1 cut(s) 342
BseBI CCWGG 3 cut(s) 138, 147, 546
BseCI ATCGAT 1 cut(s) 858
BseGI GGATG 6 cut(s) 388, 538, 561, 667, 910, 939
BseJI GATNNNNATC 1 cut(s) 342
BseLI CCNNNNNNNGG 2 cut(s) 26, 482
BseMII CTCAG 2 cut(s) 98, 264
BseNI ACTGG 2 cut(s) 901, 948
BseRI GAGGAG 2 cut(s) 270, 760
BseX3I CGGCCG 1 cut(s) 109
BseXI GCAGC 1 cut(s) 937
Bsh1236I CGCG 4 cut(s) 317, 319, 352, 357
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 1 cut(s) 111
BshVI ATCGAT 1 cut(s) 858
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 4 cut(s) 132, 145, 228, 315
BsiHKCI CYCGRG 1 cut(s) 125
BsiSI CCGG 2 cut(s) 5, 416
BsiWI CGTACG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 806
BslI CCNNNNNNNGG 2 cut(s) 26, 482
BsmAI GTCTC 1 cut(s) 169
BsmBI CGTCTC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 806
BsnI GGCC 1 cut(s) 111
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 4 cut(s) 132, 145, 228, 315
Bsp143I GATC 7 cut(s) 299, 409, 548, 558, 829, 855, 937
BspACI CCGC 4 cut(s) 234, 352, 713, 737
BspANI GGCC 1 cut(s) 111
BspCNI CTCAG 2 cut(s) 97, 263
BspDI ATCGAT 1 cut(s) 858
BspFNI CGCG 4 cut(s) 317, 319, 352, 357
BspHI TCATGA 2 cut(s) 214, 571
BspLI GGNNCC 1 cut(s) 939
BspPI GGATC 5 cut(s) 417, 556, 863, 932, 945
BspQI GCTCTTC 1 cut(s) 279
BsrFI RCCGGY 1 cut(s) 4
BsrI ACTGG 2 cut(s) 901, 948
BssAI RCCGGY 1 cut(s) 4
BssMI GATC 7 cut(s) 299, 409, 548, 558, 829, 855, 937
BssNAI GTATAC 1 cut(s) 190
Bst1107I GTATAC 1 cut(s) 190
Bst2UI CCWGG 3 cut(s) 138, 147, 546
Bst4CI ACNGT 2 cut(s) 391, 649
Bst6I CTCTTC 1 cut(s) 279
BstC8I GCNNGC 2 cut(s) 132, 315
BstDEI CTNAG 2 cut(s) 84, 250
BstF5I GGATG 6 cut(s) 388, 538, 561, 667, 910, 939
BstFNI CGCG 4 cut(s) 317, 319, 352, 357
BstHHI GCGC 2 cut(s) 319, 357
BstKTI GATC 7 cut(s) 302, 412, 551, 561, 832, 858, 940
BstMAI GTCTC 1 cut(s) 169
BstMBI GATC 7 cut(s) 299, 409, 548, 558, 829, 855, 937
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 1 cut(s) 140
BstNI CCWGG 3 cut(s) 138, 147, 546
BstNSI RCATGY 1 cut(s) 446
BstSCI CCNGG 3 cut(s) 136, 145, 544
BstSFI CTRYAG 1 cut(s) 78
BstUI CGCG 4 cut(s) 317, 319, 352, 357
BstV1I GCAGC 1 cut(s) 937
BstX2I RGATCY 1 cut(s) 937
BstYI RGATCY 1 cut(s) 937
BstZ17I GTATAC 1 cut(s) 190
BstZI CGGCCG 1 cut(s) 109
Bsu15I ATCGAT 1 cut(s) 858
BsuRI GGCC 1 cut(s) 111
BsuTUI ATCGAT 1 cut(s) 858
BtgZI GCGATG 1 cut(s) 214
BtsCI GGATG 6 cut(s) 388, 538, 561, 667, 910, 939
BtsIMutI CAGTG 2 cut(s) 258, 642
Cac8I GCNNGC 2 cut(s) 132, 315
CciI TCATGA 2 cut(s) 214, 571
CfoI GCGC 2 cut(s) 319, 357
Cfr10I RCCGGY 1 cut(s) 4
ClaI ATCGAT 1 cut(s) 858
CseI GACGC 1 cut(s) 191
Csp6I GTAC 3 cut(s) 169, 516, 894
CviAII CATG 6 cut(s) 119, 215, 443, 482, 572, 704
CviQI GTAC 3 cut(s) 169, 516, 894
DdeI CTNAG 2 cut(s) 84, 250
DpnI GATC 7 cut(s) 301, 411, 550, 560, 831, 857, 939
DpnII GATC 7 cut(s) 299, 409, 548, 558, 829, 855, 937
EaeI YGGCCR 1 cut(s) 109
EagI CGGCCG 1 cut(s) 109
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Ecl136II GAGCTC 2 cut(s) 130, 143
EclXI CGGCCG 1 cut(s) 109
Eco24I GRGCYC 2 cut(s) 132, 145
Eco52I CGGCCG 1 cut(s) 109
Eco53kI GAGCTC 2 cut(s) 130, 143
Eco57I CTGAAG 1 cut(s) 618
Eco88I CYCGRG 1 cut(s) 125
EcoICRI GAGCTC 2 cut(s) 130, 143
EcoRI GAATTC 1 cut(s) 96
EcoRII CCWGG 3 cut(s) 136, 145, 544
EcoT38I GRGCYC 2 cut(s) 132, 145
Esp3I CGTCTC 1 cut(s) 169
FaeI CATG 6 cut(s) 122, 218, 446, 485, 575, 707
FaqI GGGAC 1 cut(s) 806
FatI CATG 6 cut(s) 118, 214, 442, 481, 571, 703
FbaI TGATCA 2 cut(s) 558, 829
FblI GTMKAC 1 cut(s) 189
Fnu4HI GCNGC 4 cut(s) 234, 353, 737, 926
FokI GGATG 6 cut(s) 395, 545, 548, 674, 917, 946
FriOI GRGCYC 2 cut(s) 132, 145
Fsp4HI GCNGC 4 cut(s) 234, 353, 737, 926
FspBI CTAG 1 cut(s) 942
GlaI GCGC 2 cut(s) 318, 356
GluI GCNGC 4 cut(s) 234, 353, 737, 926
GsuI CTGGAG 3 cut(s) 129, 159, 528
HaeIII GGCC 1 cut(s) 111
HapII CCGG 2 cut(s) 5, 416
HgaI GACGC 1 cut(s) 191
HhaI GCGC 2 cut(s) 319, 357
Hin1II CATG 6 cut(s) 122, 218, 446, 485, 575, 707
Hin6I GCGC 2 cut(s) 317, 355
HinP1I GCGC 2 cut(s) 317, 355
HindIII AAGCTT 1 cut(s) 395
HinfI GANTC 7 cut(s) 59, 114, 158, 209, 218, 359, 472
HpaII CCGG 2 cut(s) 5, 416
HphI GGTGA 4 cut(s) 254, 497, 727, 736
Hpy166II GTNNAC 1 cut(s) 190
Hpy188I TCNGA 5 cut(s) 87, 95, 104, 208, 294
Hpy188III TCNNGA 3 cut(s) 215, 507, 572
Hpy8I GTNNAC 1 cut(s) 190
Hpy99I CGWCG 3 cut(s) 77, 185, 197
HpyAV CCTTC 3 cut(s) 294, 715, 872
HpyCH4III ACNGT 2 cut(s) 391, 649
HpyCH4IV ACGT 1 cut(s) 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 140
HpyF3I CTNAG 2 cut(s) 84, 250
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 6 cut(s) 122, 218, 446, 485, 575, 707
HspAI GCGC 2 cut(s) 317, 355
Ksp22I TGATCA 2 cut(s) 558, 829
Kzo9I GATC 7 cut(s) 299, 409, 548, 558, 829, 855, 937
LguI GCTCTTC 1 cut(s) 279
LmnI GCTCC 4 cut(s) 22, 139, 140, 148
Lsp1109I GCAGC 1 cut(s) 937
LweI GCATC 1 cut(s) 799
MaeI CTAG 1 cut(s) 942
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 3 cut(s) 60, 151, 242
MalI GATC 7 cut(s) 301, 411, 550, 560, 831, 857, 939
MboI GATC 7 cut(s) 299, 409, 548, 558, 829, 855, 937
MboII GAAGA 5 cut(s) 266, 268, 366, 624, 818
MfeI CAATTG 1 cut(s) 237
MflI RGATCY 1 cut(s) 937
MhlI GDGCHC 4 cut(s) 132, 145, 228, 315
MluCI AATT 4 cut(s) 41, 96, 237, 728
MlyI GAGTC 2 cut(s) 68, 212
MnlI CCTC 7 cut(s) 77, 134, 288, 291, 316, 711, 738
MseI TTAA 6 cut(s) 393, 435, 521, 651, 696, 884
MslI CAYNNNNRTG 3 cut(s) 318, 486, 708
MspI CCGG 2 cut(s) 5, 416
MspR9I CCNGG 3 cut(s) 138, 147, 546
MunI CAATTG 1 cut(s) 237
MvaI CCWGG 3 cut(s) 138, 147, 546
MvnI CGCG 4 cut(s) 317, 319, 352, 357
MwoI GCNNNNNNNGC 1 cut(s) 140
NdeII GATC 7 cut(s) 299, 409, 548, 558, 829, 855, 937
NlaIII CATG 6 cut(s) 122, 218, 446, 485, 575, 707
NlaIV GGNNCC 1 cut(s) 939
NmuCI GTSAC 2 cut(s) 60, 242
NspI RCATGY 1 cut(s) 446
OliI CACNNNNGTG 1 cut(s) 318
PaeR7I CTCGAG 1 cut(s) 125
PagI TCATGA 2 cut(s) 214, 571
PciSI GCTCTTC 1 cut(s) 279
PcsI WCGNNNNNNNCGW 2 cut(s) 177, 189
PfeI GAWTC 5 cut(s) 114, 158, 209, 359, 472
Pfl23II CGTACG 1 cut(s) 168
PfoI TCCNGGA 1 cut(s) 136
PkrI GCNGC 4 cut(s) 235, 354, 738, 927
PleI GAGTC 2 cut(s) 67, 212
PpsI GAGTC 2 cut(s) 67, 212
Psp124BI GAGCTC 2 cut(s) 132, 145
Psp6I CCWGG 3 cut(s) 136, 145, 544
PspGI CCWGG 3 cut(s) 136, 145, 544
PspLI CGTACG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 939
PspXI VCTCGAGB 1 cut(s) 125
PsuI RGATCY 1 cut(s) 937
RsaI GTAC 3 cut(s) 170, 517, 895
RsaNI GTAC 3 cut(s) 169, 516, 894
RseI CAYNNNNRTG 3 cut(s) 318, 486, 708
SacI GAGCTC 2 cut(s) 132, 145
SapI GCTCTTC 1 cut(s) 279
SaqAI TTAA 6 cut(s) 393, 435, 521, 651, 696, 884
SatI GCNGC 4 cut(s) 234, 353, 737, 926
Sau3AI GATC 7 cut(s) 299, 409, 548, 558, 829, 855, 937
ScaI AGTACT 1 cut(s) 895
SchI GAGTC 2 cut(s) 68, 212
ScrFI CCNGG 3 cut(s) 138, 147, 546
SduI GDGCHC 4 cut(s) 132, 145, 228, 315
SfaNI GCATC 1 cut(s) 799
SfcI CTRYAG 1 cut(s) 78
Sfr274I CTCGAG 1 cut(s) 125
SlaI CTCGAG 1 cut(s) 125
SmiMI CAYNNNNRTG 3 cut(s) 318, 486, 708
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 4 cut(s) 41, 96, 237, 728
SsiI CCGC 4 cut(s) 234, 352, 713, 737
SspMI CTAG 1 cut(s) 942
SstI GAGCTC 2 cut(s) 132, 145
StyD4I CCNGG 3 cut(s) 136, 145, 544
TaaI ACNGT 2 cut(s) 391, 649
TaiI ACGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 126, 858
TasI AATT 4 cut(s) 41, 96, 237, 728
TatI WGTACW 2 cut(s) 515, 893
TauI GCSGC 3 cut(s) 236, 355, 739
TfiI GAWTC 5 cut(s) 114, 158, 209, 359, 472
Tru1I TTAA 6 cut(s) 393, 435, 521, 651, 696, 884
Tru9I TTAA 6 cut(s) 393, 435, 521, 651, 696, 884
TscAI CASTG 2 cut(s) 258, 642
TseFI GTSAC 2 cut(s) 60, 242
TseI GCWGC 1 cut(s) 925
Tsp45I GTSAC 2 cut(s) 60, 242
TspGWI ACGGA 2 cut(s) 9, 151
TspRI CASTG 2 cut(s) 258, 642
XapI RAATTY 3 cut(s) 41, 96, 728
XceI RCATGY 1 cut(s) 446
XhoI CTCGAG 1 cut(s) 125
XmiI GTMKAC 1 cut(s) 189
XspI CTAG 1 cut(s) 942
ZrmI AGTACT 1 cut(s) 895
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.