Rorug04G0453500

Peroxisome biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0015051
Physical Location & Seq
Reverse (-)
60755500 .. 60757046
1547 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0453500.1

Sequence Viewer

Length: 1200 bp
ATGGCTATAAATTTGATAAATGATAAGATAATTCGGCGGGCGGAGGCCCTATTTATAGTCAACCAAGCGGAGGAGGCAGAAAGAGAGCCGGAGCTAAATATGAGCAACAAGGCAACCCCAGTGCTGGAAGCACATCCAATGAACGGTGGAGATGGCACATACAGCTACACCAAAAACTCCTATTACCAAAGAGAAGCTGCAAATGTTGCGCAAACTCTAATCGGTGATGTGATAGGCATGAAGCTTGACATAAACGAGATTACTTCTTCTTCGACCAATGCATTTTGTATAGCAGATTTGGGGTGTTCAGTTGGACCAAACACTTTTGTTTCTGTGGAGAACATACTGGAAGCTATTAAACATAAGTACCAGTCCGGATGCATGTCTTCCCAAATGCCTGAATTCCAAGTCTTCTTTAATGATCATGCAGGCAATGATTTCAATACCCTATTTGTAAATTTCCCTCCGACAAGGCCCTACTTTGCAGCTGGTGTGCCGGGTTCTTTCCATGGCCGATTATTCCCCAAGTCCTCTCTCCATTTTGTGCATTCTTCATATGCAACCCACTGGCTCTCAAAGGCACCAGAAGAACTGACAGACAAGAACTCTCCGGCATGGAACAAAGGGAAGATTCACTACACAACTGCCCCTGAAGAAATAGTTAATGCTTATGCAGCTCAATTTGCCAAGGACATGGCAACATTCTTGGAAGCTCGCGCTCAAGAGCTTGTGGTTGGTGGAATGATGATGCTAATCATGCAAGCTGTCCCAACTGGGATCCCTCATTCCCGTGTTCCAAATGGAGTGATGTTTGATTTTCTGGGGTCTATTCTCATGGATATGGCAAAGGAAGGAGTTATATCTGAAGCTGAGGTGGACTCATTCAACTTGCCAGTGTACACTACCTCTCCCAAGGAGATGGGAGAGCTGGTAGAGAGAAATGGATGCTTTAGCATAGAGCGAATGGAGTCAACGAGCCCCTGGCTTGTTTCCAAGCATTCGAACTCCAACTACGGGAAGACACTGTCGATGGCGCTAAGAGCTGGCATGGAGGGAGTTCTCAAAAGCCATTTTGGAAGTGAGATTACCAATCAACTGTTTAATAGGCTCTGTGACCAAAGTGGACAACTTACCCACCAACTAGAGGAGTCCTGCTGCAGAGAAAGAACTCAGTTGTTTGTTGCTCTCAAGCGCAAATGA

Protein Analysis

399

Amino Acids

44.27

Weight (kDa)

5.68

Isoelectric Point (pI)

43.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_7 PF03492 88 - 398 9e-108 SAM dependent carboxyl methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29260
fragaria_vesca FvH4_3g07730
malus_domestica MD05G1300300.v1.1 MD10G1279400.v1.1
prunus_persica Prupe.4G062000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0010881
rosa_laevigata RLG00000031794
rosa_multiflora Rmu_sc0000109.1_g000002
rosa_roxburghii Rroxscaffold_1G00065480
rosa_rugosa Rorug04G0453500
rosa_samantha Rh5AG086200 Rh5BG080400 Rh5CG092900 Rh5DG080600
rosa_wichuraiana Rw0G017460 Rw0G017910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 210
AccB1I GGYRCC 1 cut(s) 580
AccII CGCG 1 cut(s) 717
AccIII TCCGGA 1 cut(s) 374
AciI CCGC 3 cut(s) 37, 41, 68
AclWI GGATC 2 cut(s) 772, 785
AcoI YGGCCR 1 cut(s) 511
AcsI RAATTY 3 cut(s) 10, 401, 457
AcuI CTGAAG 2 cut(s) 672, 885
AfaI GTAC 2 cut(s) 368, 899
AfiI CCNNNNNNNGG 5 cut(s) 70, 124, 143, 1014, 1144
AgsI TTSAA 2 cut(s) 442, 886
AjnI CCWGG 1 cut(s) 980
AlwI GGATC 2 cut(s) 772, 785
Aor13HI TCCGGA 1 cut(s) 374
AoxI GGCC 3 cut(s) 45, 473, 511
ApeKI GCWGC 4 cut(s) 197, 485, 674, 1155
ApoI RAATTY 3 cut(s) 10, 401, 457
AspLEI GCGC 4 cut(s) 211, 719, 1036, 1194
AspS9I GGNCC 3 cut(s) 46, 314, 474
AsuC2I CCSGG 1 cut(s) 498
AsuHPI GGTGA 1 cut(s) 236
AsuII TTCGAA 1 cut(s) 1001
AvaII GGWCC 1 cut(s) 314
BaeI ACNNNNGTAYC 2 cut(s) 350, 383
BamHI GGATCC 1 cut(s) 777
BanI GGYRCC 1 cut(s) 580
BanII GRGCYC 1 cut(s) 980
BarI GAAGNNNNNNTAC 4 cut(s) 620, 652, 1069, 1101
BbsI GAAGAC 3 cut(s) 378, 403, 1025
BbvCI CCTCAGC 1 cut(s) 870
BbvI GCAGC 4 cut(s) 184, 497, 686, 1142
BccI CCATC 3 cut(s) 146, 913, 1024
BciT130I CCWGG 1 cut(s) 982
BclI TGATCA 1 cut(s) 421
BcnI CCSGG 1 cut(s) 498
BfaI CTAG 1 cut(s) 1142
BfmI CTRYAG 1 cut(s) 1156
BfoI RGCGCY 1 cut(s) 1037
BisI GCNGC 4 cut(s) 198, 486, 675, 1156
BlsI GCNGC 4 cut(s) 199, 487, 676, 1157
Bme1390I CCNGG 2 cut(s) 498, 982
Bme18I GGWCC 1 cut(s) 314
BmgT120I GGNCC 3 cut(s) 46, 314, 474
BmiI GGNNCC 2 cut(s) 582, 779
BmrFI CCNGG 2 cut(s) 498, 982
BmrI ACTGGG 2 cut(s) 113, 783
BmsI GCATC 3 cut(s) 368, 738, 935
BmuI ACTGGG 2 cut(s) 113, 783
BpiI GAAGAC 3 cut(s) 378, 403, 1025
BplI GAGNNNNNCTC 2 cut(s) 863, 895
Bpu10I CCTNAGC 1 cut(s) 870
Bpu14I TTCGAA 1 cut(s) 1001
BpuEI CTTGAG 2 cut(s) 705, 1172
BpuMI CCSGG 1 cut(s) 498
BsaBI GATNNNNATC 1 cut(s) 752
BsaJI CCNNGG 4 cut(s) 508, 687, 912, 980
BsaWI WCCGGW 1 cut(s) 374
BsaXI ACNNNNNCTCC 4 cut(s) 892, 915, 922, 945
Bsc4I CCNNNNNNNGG 5 cut(s) 70, 124, 143, 1014, 1144
Bse1I ACTGG 6 cut(s) 119, 351, 370, 572, 778, 893
Bse3DI GCAATG 1 cut(s) 439
Bse8I GATNNNNATC 1 cut(s) 752
BseAI TCCGGA 1 cut(s) 374
BseBI CCWGG 1 cut(s) 982
BseDI CCNNGG 4 cut(s) 508, 687, 912, 980
BseGI GGATG 3 cut(s) 133, 383, 950
BseJI GATNNNNATC 1 cut(s) 752
BseLI CCNNNNNNNGG 5 cut(s) 70, 124, 143, 1014, 1144
BseMI GCAATG 1 cut(s) 439
BseMII CTCAG 2 cut(s) 861, 1184
BseNI ACTGG 6 cut(s) 119, 351, 370, 572, 778, 893
BseRI GAGGAG 2 cut(s) 86, 1160
BseXI GCAGC 4 cut(s) 184, 497, 686, 1142
Bsh1236I CGCG 1 cut(s) 717
BshFI GGCC 3 cut(s) 47, 475, 513
BshNI GGYRCC 1 cut(s) 580
BsiSI CCGG 4 cut(s) 89, 375, 497, 611
BslFI GGGAC 1 cut(s) 752
BslI CCNNNNNNNGG 5 cut(s) 70, 124, 143, 1014, 1144
BsmFI GGGAC 1 cut(s) 752
BsmI GAATGC 2 cut(s) 547, 997
BsnI GGCC 3 cut(s) 47, 475, 513
Bsp119I TTCGAA 1 cut(s) 1001
Bsp1286I GDGCHC 1 cut(s) 980
Bsp13I TCCGGA 1 cut(s) 374
Bsp1407I TGTACA 1 cut(s) 897
Bsp143I GATC 2 cut(s) 421, 777
Bsp19I CCATGG 1 cut(s) 508
BspACI CCGC 3 cut(s) 37, 41, 68
BspANI GGCC 3 cut(s) 47, 475, 513
BspCNI CTCAG 2 cut(s) 862, 1183
BspEI TCCGGA 1 cut(s) 374
BspFNI CGCG 1 cut(s) 717
BspLI GGNNCC 2 cut(s) 582, 779
BspMAI CTGCAG 1 cut(s) 1160
BspPI GGATC 2 cut(s) 772, 785
BspT104I TTCGAA 1 cut(s) 1001
BspT107I GGYRCC 1 cut(s) 580
BsrDI GCAATG 1 cut(s) 439
BsrGI TGTACA 1 cut(s) 897
BsrI ACTGG 6 cut(s) 119, 351, 370, 572, 778, 893
BssECI CCNNGG 4 cut(s) 508, 687, 912, 980
BssMI GATC 2 cut(s) 421, 777
BssT1I CCWWGG 3 cut(s) 508, 687, 912
Bst2UI CCWGG 1 cut(s) 982
Bst4CI ACNGT 3 cut(s) 146, 1026, 1098
BstAPI GCANNNNNTGC 1 cut(s) 206
BstAUI TGTACA 1 cut(s) 897
BstBI TTCGAA 1 cut(s) 1001
BstC8I GCNNGC 5 cut(s) 39, 430, 715, 762, 1045
BstDEI CTNAG 3 cut(s) 870, 1037, 1170
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 3 cut(s) 133, 383, 950
BstFNI CGCG 1 cut(s) 717
BstH2I RGCGCY 1 cut(s) 1037
BstHHI GCGC 4 cut(s) 211, 719, 1036, 1194
BstKTI GATC 2 cut(s) 424, 780
BstMBI GATC 2 cut(s) 421, 777
BstMWI GCNNNNNNNGC 7 cut(s) 74, 162, 206, 674, 683, 757, 1040
BstNI CCWGG 1 cut(s) 982
BstNSI RCATGY 1 cut(s) 385
BstSCI CCNGG 2 cut(s) 496, 980
BstSFI CTRYAG 1 cut(s) 1156
BstUI CGCG 1 cut(s) 717
BstV1I GCAGC 4 cut(s) 184, 497, 686, 1142
BstV2I GAAGAC 3 cut(s) 378, 403, 1025
BstX2I RGATCY 1 cut(s) 777
BstXI CCANNNNNNTGG 2 cut(s) 694, 919
BstYI RGATCY 1 cut(s) 777
BsuRI GGCC 3 cut(s) 47, 475, 513
BtgI CCRYGG 1 cut(s) 508
BtsCI GGATG 3 cut(s) 133, 383, 950
BtsIMutI CAGTG 4 cut(s) 126, 565, 900, 1022
Cac8I GCNNGC 5 cut(s) 39, 430, 715, 762, 1045
CfoI GCGC 4 cut(s) 211, 719, 1036, 1194
Cfr13I GGNCC 3 cut(s) 46, 314, 474
Csp6I GTAC 2 cut(s) 367, 898
CviAII CATG 9 cut(s) 238, 382, 425, 509, 615, 694, 757, 835, 1048
CviQI GTAC 2 cut(s) 367, 898
DdeI CTNAG 3 cut(s) 870, 1037, 1170
DpnI GATC 2 cut(s) 423, 779
DpnII GATC 2 cut(s) 421, 777
EaeI YGGCCR 1 cut(s) 511
EciI GGCGGA 1 cut(s) 56
Eco130I CCWWGG 3 cut(s) 508, 687, 912
Eco24I GRGCYC 1 cut(s) 980
Eco47I GGWCC 1 cut(s) 314
Eco57I CTGAAG 2 cut(s) 672, 885
EcoO109I RGGNCCY 2 cut(s) 46, 474
EcoRI GAATTC 1 cut(s) 401
EcoRII CCWGG 1 cut(s) 980
EcoT14I CCWWGG 3 cut(s) 508, 687, 912
EcoT22I ATGCAT 2 cut(s) 283, 383
EcoT38I GRGCYC 1 cut(s) 980
ErhI CCWWGG 3 cut(s) 508, 687, 912
FaeI CATG 9 cut(s) 241, 385, 428, 512, 618, 697, 760, 838, 1051
FaqI GGGAC 1 cut(s) 752
FatI CATG 9 cut(s) 237, 381, 424, 508, 614, 693, 756, 834, 1047
FauI CCCGC 1 cut(s) 30
FauNDI CATATG 1 cut(s) 556
FbaI TGATCA 1 cut(s) 421
Fnu4HI GCNGC 4 cut(s) 198, 486, 675, 1156
FokI GGATG 3 cut(s) 120, 390, 957
FriOI GRGCYC 1 cut(s) 980
Fsp4HI GCNGC 4 cut(s) 198, 486, 675, 1156
FspBI CTAG 1 cut(s) 1142
FspI TGCGCA 1 cut(s) 210
GlaI GCGC 4 cut(s) 210, 718, 1035, 1193
GluI GCNGC 4 cut(s) 198, 486, 675, 1156
HaeII RGCGCY 1 cut(s) 1037
HaeIII GGCC 3 cut(s) 47, 475, 513
HapII CCGG 4 cut(s) 89, 375, 497, 611
HhaI GCGC 4 cut(s) 211, 719, 1036, 1194
Hin1II CATG 9 cut(s) 241, 385, 428, 512, 618, 697, 760, 838, 1051
Hin6I GCGC 4 cut(s) 209, 717, 1034, 1192
HinP1I GCGC 4 cut(s) 209, 717, 1034, 1192
HincII GTYRAC 2 cut(s) 61, 972
HindII GTYRAC 2 cut(s) 61, 972
HindIII AAGCTT 1 cut(s) 242
HinfI GANTC 4 cut(s) 631, 878, 968, 1148
HpaII CCGG 4 cut(s) 89, 375, 497, 611
HphI GGTGA 1 cut(s) 236
Hpy166II GTNNAC 6 cut(s) 61, 877, 898, 900, 972, 1124
Hpy188I TCNGA 2 cut(s) 468, 865
Hpy188III TCNNGA 2 cut(s) 375, 722
Hpy8I GTNNAC 6 cut(s) 61, 877, 898, 900, 972, 1124
HpyAV CCTTC 1 cut(s) 845
HpyCH4III ACNGT 3 cut(s) 146, 1026, 1098
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 162, 206, 674, 683, 757, 1040
HpyF3I CTNAG 3 cut(s) 870, 1037, 1170
Hsp92II CATG 9 cut(s) 241, 385, 428, 512, 618, 697, 760, 838, 1051
HspAI GCGC 4 cut(s) 209, 717, 1034, 1192
Kpn2I TCCGGA 1 cut(s) 374
Ksp22I TGATCA 1 cut(s) 421
Kzo9I GATC 2 cut(s) 421, 777
LmnI GCTCC 1 cut(s) 91
Lsp1109I GCAGC 4 cut(s) 184, 497, 686, 1142
LweI GCATC 3 cut(s) 368, 738, 935
MaeI CTAG 1 cut(s) 1142
MaeIII GTNAC 1 cut(s) 1112
MalI GATC 2 cut(s) 423, 779
MboI GATC 2 cut(s) 421, 777
MboII GAAGA 9 cut(s) 258, 261, 378, 403, 543, 599, 640, 665, 1030
MflI RGATCY 1 cut(s) 777
MhlI GDGCHC 1 cut(s) 980
MluCI AATT 5 cut(s) 10, 30, 401, 457, 680
MlyI GAGTC 3 cut(s) 872, 977, 1157
MmeI TCCRAC 3 cut(s) 292, 491, 1032
Mph1103I ATGCAT 2 cut(s) 283, 383
MroI TCCGGA 1 cut(s) 374
MseI TTAA 4 cut(s) 357, 417, 663, 1101
MslI CAYNNNNRTG 2 cut(s) 789, 839
MspA1I CMGCKG 1 cut(s) 488
MspI CCGG 4 cut(s) 89, 375, 497, 611
MspR9I CCNGG 2 cut(s) 498, 982
Mva1269I GAATGC 2 cut(s) 547, 997
MvaI CCWGG 1 cut(s) 982
MvnI CGCG 1 cut(s) 717
MwoI GCNNNNNNNGC 7 cut(s) 74, 162, 206, 674, 683, 757, 1040
NciI CCSGG 1 cut(s) 498
NcoI CCATGG 1 cut(s) 508
NdeI CATATG 1 cut(s) 556
NdeII GATC 2 cut(s) 421, 777
NlaIII CATG 9 cut(s) 241, 385, 428, 512, 618, 697, 760, 838, 1051
NlaIV GGNNCC 2 cut(s) 582, 779
NmuCI GTSAC 1 cut(s) 1112
NsbI TGCGCA 1 cut(s) 210
NsiI ATGCAT 2 cut(s) 283, 383
NspI RCATGY 1 cut(s) 385
NspV TTCGAA 1 cut(s) 1001
PctI GAATGC 2 cut(s) 547, 997
PfeI GAWTC 1 cut(s) 631
PflFI GACNNNGTC 1 cut(s) 1024
PkrI GCNGC 4 cut(s) 199, 487, 676, 1157
PleI GAGTC 3 cut(s) 872, 976, 1156
PpsI GAGTC 3 cut(s) 872, 976, 1156
Psp6I CCWGG 1 cut(s) 980
PspGI CCWGG 1 cut(s) 980
PspN4I GGNNCC 2 cut(s) 582, 779
PspPI GGNCC 3 cut(s) 46, 314, 474
PsrI GAACNNNNNNTAC 2 cut(s) 995, 1027
PstI CTGCAG 1 cut(s) 1160
PsuI RGATCY 1 cut(s) 777
PsyI GACNNNGTC 1 cut(s) 1024
PvuII CAGCTG 1 cut(s) 488
RsaI GTAC 2 cut(s) 368, 899
RsaNI GTAC 2 cut(s) 367, 898
RseI CAYNNNNRTG 2 cut(s) 789, 839
SaqAI TTAA 4 cut(s) 357, 417, 663, 1101
SatI GCNGC 4 cut(s) 198, 486, 675, 1156
Sau3AI GATC 2 cut(s) 421, 777
Sau96I GGNCC 3 cut(s) 46, 314, 474
SchI GAGTC 3 cut(s) 872, 977, 1157
ScrFI CCNGG 2 cut(s) 498, 982
SduI GDGCHC 1 cut(s) 980
SfaNI GCATC 3 cut(s) 368, 738, 935
SfcI CTRYAG 1 cut(s) 1156
SfuI TTCGAA 1 cut(s) 1001
SinI GGWCC 1 cut(s) 314
SmiMI CAYNNNNRTG 2 cut(s) 789, 839
SmlI CTYRAG 2 cut(s) 720, 1187
SmoI CTYRAG 2 cut(s) 720, 1187
Sse9I AATT 5 cut(s) 10, 30, 401, 457, 680
SsiI CCGC 3 cut(s) 37, 41, 68
SspMI CTAG 1 cut(s) 1142
StyD4I CCNGG 2 cut(s) 496, 980
StyI CCWWGG 3 cut(s) 508, 687, 912
TaaI ACNGT 3 cut(s) 146, 1026, 1098
TaqI TCGA 3 cut(s) 272, 1001, 1028
TasI AATT 5 cut(s) 10, 30, 401, 457, 680
TatI WGTACW 1 cut(s) 897
TfiI GAWTC 1 cut(s) 631
Tru1I TTAA 4 cut(s) 357, 417, 663, 1101
Tru9I TTAA 4 cut(s) 357, 417, 663, 1101
TscAI CASTG 4 cut(s) 126, 572, 900, 1029
TseFI GTSAC 1 cut(s) 1112
TseI GCWGC 4 cut(s) 197, 485, 674, 1155
Tsp45I GTSAC 1 cut(s) 1112
TspDTI ATGAA 3 cut(s) 155, 254, 543
TspRI CASTG 4 cut(s) 126, 572, 900, 1029
Tth111I GACNNNGTC 1 cut(s) 1024
VpaK11BI GGWCC 1 cut(s) 314
XapI RAATTY 3 cut(s) 10, 401, 457
XceI RCATGY 1 cut(s) 385
XspI CTAG 1 cut(s) 1142
Zsp2I ATGCAT 2 cut(s) 283, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.