MD05G1300300.v1.1

Peroxisome biogenesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0015051
Physical Location & Seq
Reverse (-)
43351837 .. 43353433
1597 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1300300.v1.1.491

Sequence Viewer

Length: 981 bp
ATGCCAGTTTTCAAAGCTCCGTTCAACGGATACTCCGTCAAGTTCAGCCCCTTCTACGAGTCCCGACTCGCCGTCGCCACCTCCCAAAACTTCGGCATCCTCGGCAACGGCCGCCTCCACGTCATCGACCTCTCCCCTGCCCCCGCCCCTCTGGGCCCCGGCGCACCCCGCCAACCAATCACCGAGCTCGTCTCCTACGACACCGCCGACGGCGTATACGACGTCGCATGGTCTGAGTCCCACGACTCCCTCCTAGTCGCCGCCATCGCCGATGGCTCCGTTAAGATCTACGACACCGCTCTGCCCCCGGCCTCCAACCCCCTCCGCTCCCTCCACGAGCACACCCGCGAGGTCAGCTCCGCCGATTACAACCCCACCCGCCGCGACTCCTTTCTCACCTCCTCATGGGACGACACCGTCAAGCTATGGACCGTTGACCGTCCCGCATCTGTTCGAACTTTCAAGGAACACGCATACTGCGTCTACTCCGCCGTCTGGAACCCCCGCCATGCCGATGTATTCGCCTCCGCGTCGGGCGACTGCACTCTGCGCGTTTGGGACGTGCGCGAGCCCGGATCCACCATGATCATCCCCGCGCACGAGCTCGAGATCCTGGCTTGCGATTGGAACAAGTACGACGACTGCTGCATCGCCACCGCCTCCGTCGACAAGTCGATTAAAGTCTGGGACGTGAGGAGCATGAGGGTTCCGGTCTCGGTGCTCAACGGCCACGGCTACGCGGTGAGGAAGGTGAAATTCTCGCCGCACAGGCAAAGCTTGATCATGTCATGCTCGTACGACATGTCGGTTTGCTTGTGGGATTACATGGTGGAGGATGCGCTGGTGGCGCGGTACGACCACCACACGGAGTTCGCGGTGGGTGTGGATATGAGCGTGTTGGTGGAGGGGCTTCTGGCCAGTACTGGTTGGGACGAGCTTGTGTATGTTTGGCAGCACGGGACCGATCCCAGAGCGCCCTAA

Protein Analysis

327

Amino Acids

36.23

Weight (kDa)

5.4

Isoelectric Point (pI)

48.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WD40_Prp19 PF24814 68 - 190 5.6e-13 Prp19 WD40 domain
Beta-prop_WDR5 PF25175 69 - 189 1.9e-18 WDR5 beta-propeller domain
WD40_CDC20-Fz PF24807 69 - 189 1.1e-11 CDC20/Fizzy WD40 domain
WDR55 PF24796 69 - 236 1e-09 WDR55
Beta-prop_WDR3_1st PF25173 70 - 231 7.7e-18 WDR3 first beta-propeller domain
Beta-prop_EIPR1 PF23609 71 - 143 2.4e-06 EIPR1 beta-propeller
Beta-prop_THOC3 PF25174 72 - 161 1.7e-10 THOC3 beta-propeller domain
Beta-prop_Aladin PF25460 75 - 233 1.2e-06 Aladin seven-bladed propeller
Beta-prop_WDR3_2nd PF25172 80 - 187 9.6e-07 WDR3 second beta-propeller domain
WD40_Gbeta PF25391 109 - 317 1.6e-11 G protein beta WD-40 repeat protein
Beta-prop_THOC3 PF25174 114 - 318 3.6e-26 THOC3 beta-propeller domain
WD40_CDC20-Fz PF24807 138 - 283 6.7e-18 CDC20/Fizzy WD40 domain
Beta-prop_EIPR1 PF23609 160 - 273 4e-16 EIPR1 beta-propeller
Beta-prop_EML_2 PF23414 169 - 315 1.4e-08 Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_TEP1_2nd PF25047 172 - 319 3.2e-10 TEP-1 second beta-propeller
Beta-prop_WDR5 PF25175 175 - 319 5e-22 WDR5 beta-propeller domain
WD40_MABP1-WDR62_2nd PF24782 176 - 299 5.3e-11 MABP1/WDR62 second WD40 domain
Beta-prop_WDR3_2nd PF25172 200 - 322 3.4e-07 WDR3 second beta-propeller domain
WD40_Prp19 PF24814 202 - 298 2.1e-10 Prp19 WD40 domain
Beta-prop_WDR3_1st PF25173 213 - 319 3.6e-13 WDR3 first beta-propeller domain
WD40 PF00400 237 - 274 4.2e-07 WD domain, G-beta repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29260
fragaria_vesca FvH4_3g07730
malus_domestica MD05G1300300.v1.1 MD10G1279400.v1.1
prunus_persica Prupe.4G062000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0010881
rosa_laevigata RLG00000031794
rosa_multiflora Rmu_sc0000109.1_g000002
rosa_roxburghii Rroxscaffold_1G00065480
rosa_rugosa Rorug04G0453500
rosa_samantha Rh5AG086200 Rh5BG080400 Rh5CG092900 Rh5DG080600
rosa_wichuraiana Rw0G017460 Rw0G017910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 416
AatII GACGTC 1 cut(s) 225
AccBSI CCGCTC 2 cut(s) 299, 327
AccI GTMKAC 3 cut(s) 216, 483, 666
AccII CGCG 9 cut(s) 348, 384, 530, 552, 567, 596, 740, 850, 875
AclWI GGATC 4 cut(s) 570, 583, 604, 959
AcoI YGGCCR 3 cut(s) 109, 727, 915
AcsI RAATTY 1 cut(s) 755
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 4 cut(s) 635, 797, 854, 922
AfiI CCNNNNNNNGG 4 cut(s) 26, 405, 495, 865
AflIII ACRYGT 1 cut(s) 801
AgsI TTSAA 3 cut(s) 13, 25, 463
AhdI GACNNNNNGTC 1 cut(s) 71
AjiI CACGTC 3 cut(s) 121, 562, 691
AjnI CCWGG 1 cut(s) 612
AluBI AGCT 7 cut(s) 17, 187, 357, 424, 604, 777, 937
AluI AGCT 7 cut(s) 17, 187, 357, 424, 604, 777, 937
Alw21I GWGCWC 4 cut(s) 189, 342, 606, 723
Alw26I GTCTC 2 cut(s) 196, 718
AlwI GGATC 4 cut(s) 570, 583, 604, 959
Ama87I CYCGRG 1 cut(s) 605
AoxI GGCC 5 cut(s) 109, 154, 309, 727, 915
ApaI GGGCCC 1 cut(s) 158
ApeKI GCWGC 2 cut(s) 645, 952
ApoI RAATTY 1 cut(s) 755
AspLEI GCGC 7 cut(s) 164, 552, 567, 598, 841, 850, 976
AspS9I GGNCC 4 cut(s) 154, 155, 429, 960
AsuC2I CCSGG 3 cut(s) 159, 308, 573
AsuHPI GGTGA 4 cut(s) 172, 388, 754, 763
AsuII TTCGAA 1 cut(s) 454
AvaI CYCGRG 1 cut(s) 605
AvaII GGWCC 2 cut(s) 429, 960
BaeGI GKGCMC 1 cut(s) 158
BalI TGGCCA 1 cut(s) 917
BamHI GGATCC 1 cut(s) 575
BanII GRGCYC 4 cut(s) 158, 189, 573, 606
BauI CACGAG 2 cut(s) 335, 599
Bbv12I GWGCWC 4 cut(s) 189, 342, 606, 723
BbvI GCAGC 2 cut(s) 632, 964
BccI CCATC 2 cut(s) 266, 272
BceAI ACGGC 6 cut(s) 56, 124, 226, 476, 742, 748
BciT130I CCWGG 1 cut(s) 614
BciVI GTATCC 1 cut(s) 23
BclI TGATCA 2 cut(s) 585, 780
BcnI CCSGG 3 cut(s) 159, 308, 573
BcoDI GTCTC 2 cut(s) 196, 718
BfaI CTAG 1 cut(s) 254
BfoI RGCGCY 1 cut(s) 977
BfuI GTATCC 1 cut(s) 23
BglI GCCNNNNNGGC 1 cut(s) 769
BglII AGATCT 1 cut(s) 285
BisI GCNGC 6 cut(s) 112, 261, 382, 646, 764, 953
BlsI GCNGC 6 cut(s) 113, 262, 383, 647, 765, 954
BmcAI AGTACT 1 cut(s) 922
Bme1390I CCNGG 4 cut(s) 159, 308, 573, 614
Bme18I GGWCC 2 cut(s) 429, 960
BmeRI GACNNNNNGTC 1 cut(s) 71
BmeT110I CYCGRG 1 cut(s) 605
BmgBI CACGTC 3 cut(s) 121, 562, 691
BmgT120I GGNCC 4 cut(s) 154, 155, 429, 960
BmiI GGNNCC 7 cut(s) 156, 157, 277, 500, 577, 708, 961
BmrFI CCNGG 4 cut(s) 159, 308, 573, 614
BmsI GCATC 4 cut(s) 105, 455, 657, 826
BplI GAGNNNNNCTC 4 cut(s) 176, 208, 341, 373
Bpu14I TTCGAA 1 cut(s) 454
BpuMI CCSGG 3 cut(s) 159, 308, 573
BsaHI GRCGYC 1 cut(s) 222
BsaI GGTCTC 1 cut(s) 718
BsaJI CCNNGG 4 cut(s) 100, 157, 306, 730
BsaWI WCCGGW 1 cut(s) 709
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 405, 495, 865
Bse1I ACTGG 3 cut(s) 5, 918, 928
BseBI CCWGG 1 cut(s) 614
BseDI CCNNGG 4 cut(s) 100, 157, 306, 730
BseGI GGATG 3 cut(s) 96, 588, 841
BseLI CCNNNNNNNGG 4 cut(s) 26, 405, 495, 865
BseMII CTCAG 1 cut(s) 225
BseNI ACTGG 3 cut(s) 5, 918, 928
BseRI GAGGAG 2 cut(s) 391, 709
BseSI GKGCMC 1 cut(s) 158
BseX3I CGGCCG 1 cut(s) 109
BseXI GCAGC 2 cut(s) 632, 964
BsgI GTGCAG 1 cut(s) 526
Bsh1236I CGCG 9 cut(s) 348, 384, 530, 552, 567, 596, 740, 850, 875
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 5 cut(s) 111, 156, 311, 729, 917
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 4 cut(s) 189, 342, 606, 723
BsiHKCI CYCGRG 1 cut(s) 605
BsiSI CCGG 4 cut(s) 159, 308, 573, 710
BsiWI CGTACG 1 cut(s) 795
BslFI GGGAC 8 cut(s) 46, 223, 422, 426, 572, 701, 944, 973
BslI CCNNNNNNNGG 4 cut(s) 26, 405, 495, 865
BsmAI GTCTC 2 cut(s) 196, 718
BsmBI CGTCTC 1 cut(s) 196
BsmFI GGGAC 8 cut(s) 46, 223, 422, 426, 572, 701, 944, 973
BsnI GGCC 5 cut(s) 111, 156, 311, 729, 917
Bso31I GGTCTC 1 cut(s) 718
BsoBI CYCGRG 1 cut(s) 605
Bsp119I TTCGAA 1 cut(s) 454
Bsp120I GGGCCC 1 cut(s) 154
Bsp1286I GDGCHC 6 cut(s) 158, 189, 342, 573, 606, 723
Bsp143I GATC 6 cut(s) 285, 575, 585, 609, 780, 964
BspANI GGCC 5 cut(s) 111, 156, 311, 729, 917
BspCNI CTCAG 1 cut(s) 226
BspFNI CGCG 9 cut(s) 348, 384, 530, 552, 567, 596, 740, 850, 875
BspLI GGNNCC 7 cut(s) 156, 157, 277, 500, 577, 708, 961
BspPI GGATC 4 cut(s) 570, 583, 604, 959
BspT104I TTCGAA 1 cut(s) 454
BspTNI GGTCTC 1 cut(s) 718
BsrBI CCGCTC 2 cut(s) 299, 327
BsrI ACTGG 3 cut(s) 5, 918, 928
BssECI CCNNGG 4 cut(s) 100, 157, 306, 730
BssMI GATC 6 cut(s) 285, 575, 585, 609, 780, 964
BssNAI GTATAC 1 cut(s) 217
BssNI GRCGYC 1 cut(s) 222
BssSI CACGAG 2 cut(s) 335, 599
Bst1107I GTATAC 1 cut(s) 217
Bst2BI CACGAG 2 cut(s) 335, 599
Bst2UI CCWGG 1 cut(s) 614
Bst4CI ACNGT 3 cut(s) 418, 433, 440
BstACI GRCGYC 1 cut(s) 222
BstBI TTCGAA 1 cut(s) 454
BstC8I GCNNGC 2 cut(s) 569, 619
BstDEI CTNAG 1 cut(s) 234
BstDSI CCRYGG 1 cut(s) 730
BstF5I GGATG 3 cut(s) 96, 588, 841
BstFNI CGCG 9 cut(s) 348, 384, 530, 552, 567, 596, 740, 850, 875
BstH2I RGCGCY 1 cut(s) 977
BstHHI GCGC 7 cut(s) 164, 552, 567, 598, 841, 850, 976
BstKTI GATC 6 cut(s) 288, 578, 588, 612, 783, 967
BstMAI GTCTC 2 cut(s) 196, 718
BstMBI GATC 6 cut(s) 285, 575, 585, 609, 780, 964
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 9 cut(s) 102, 111, 168, 266, 354, 549, 769, 845, 847
BstNI CCWGG 1 cut(s) 614
BstNSI RCATGY 1 cut(s) 805
BstSCI CCNGG 4 cut(s) 157, 306, 571, 612
BstSLI GKGCMC 1 cut(s) 158
BstUI CGCG 9 cut(s) 348, 384, 530, 552, 567, 596, 740, 850, 875
BstV1I GCAGC 2 cut(s) 632, 964
BstX2I RGATCY 3 cut(s) 285, 575, 609
BstYI RGATCY 3 cut(s) 285, 575, 609
BstZ17I GTATAC 1 cut(s) 217
BstZI CGGCCG 1 cut(s) 109
BsuI GTATCC 1 cut(s) 23
BsuRI GGCC 5 cut(s) 111, 156, 311, 729, 917
BtgI CCRYGG 1 cut(s) 730
BtgZI GCGATG 2 cut(s) 250, 634
BtrI CACGTC 3 cut(s) 121, 562, 691
BtsCI GGATG 3 cut(s) 96, 588, 841
Cac8I GCNNGC 2 cut(s) 569, 619
CfoI GCGC 7 cut(s) 164, 552, 567, 598, 841, 850, 976
Cfr13I GGNCC 4 cut(s) 154, 155, 429, 960
CseI GACGC 2 cut(s) 469, 519
Csp6I GTAC 4 cut(s) 634, 796, 853, 921
CviAII CATG 9 cut(s) 228, 405, 509, 583, 700, 784, 789, 802, 826
CviQI GTAC 4 cut(s) 634, 796, 853, 921
DdeI CTNAG 1 cut(s) 234
DpnI GATC 6 cut(s) 287, 577, 587, 611, 782, 966
DpnII GATC 6 cut(s) 285, 575, 585, 609, 780, 964
DrdI GACNNNNNNGTC 1 cut(s) 416
DriI GACNNNNNGTC 1 cut(s) 71
DseDI GACNNNNNNGTC 1 cut(s) 416
EaeI YGGCCR 3 cut(s) 109, 727, 915
EagI CGGCCG 1 cut(s) 109
Eam1105I GACNNNNNGTC 1 cut(s) 71
EciI GGCGGA 2 cut(s) 349, 478
Ecl136II GAGCTC 2 cut(s) 187, 604
EclXI CGGCCG 1 cut(s) 109
Eco24I GRGCYC 4 cut(s) 158, 189, 573, 606
Eco31I GGTCTC 1 cut(s) 718
Eco47I GGWCC 2 cut(s) 429, 960
Eco52I CGGCCG 1 cut(s) 109
Eco53kI GAGCTC 2 cut(s) 187, 604
Eco88I CYCGRG 1 cut(s) 605
EcoICRI GAGCTC 2 cut(s) 187, 604
EcoO109I RGGNCCY 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 612
EcoT38I GRGCYC 4 cut(s) 158, 189, 573, 606
Esp3I CGTCTC 1 cut(s) 196
FaeI CATG 9 cut(s) 231, 408, 512, 586, 703, 787, 792, 805, 829
FaqI GGGAC 8 cut(s) 46, 223, 422, 426, 572, 701, 944, 973
FatI CATG 9 cut(s) 227, 404, 508, 582, 699, 783, 788, 801, 825
FauI CCCGC 7 cut(s) 151, 176, 353, 386, 451, 512, 601
FbaI TGATCA 2 cut(s) 585, 780
FblI GTMKAC 3 cut(s) 216, 483, 666
Fnu4HI GCNGC 6 cut(s) 112, 261, 382, 646, 764, 953
FokI GGATG 3 cut(s) 83, 575, 848
FriOI GRGCYC 4 cut(s) 158, 189, 573, 606
Fsp4HI GCNGC 6 cut(s) 112, 261, 382, 646, 764, 953
FspBI CTAG 1 cut(s) 254
GlaI GCGC 7 cut(s) 163, 551, 566, 597, 840, 849, 975
GluI GCNGC 6 cut(s) 112, 261, 382, 646, 764, 953
HaeII RGCGCY 1 cut(s) 977
HaeIII GGCC 5 cut(s) 111, 156, 311, 729, 917
HapII CCGG 4 cut(s) 159, 308, 573, 710
HgaI GACGC 2 cut(s) 469, 519
HhaI GCGC 7 cut(s) 164, 552, 567, 598, 841, 850, 976
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 9 cut(s) 231, 408, 512, 586, 703, 787, 792, 805, 829
Hin6I GCGC 7 cut(s) 162, 550, 565, 596, 839, 848, 974
HinP1I GCGC 7 cut(s) 162, 550, 565, 596, 839, 848, 974
HincII GTYRAC 2 cut(s) 436, 667
HindII GTYRAC 2 cut(s) 436, 667
HindIII AAGCTT 1 cut(s) 775
HinfI GANTC 5 cut(s) 59, 66, 236, 245, 386
HpaII CCGG 4 cut(s) 159, 308, 573, 710
HphI GGTGA 4 cut(s) 172, 388, 754, 763
Hpy166II GTNNAC 4 cut(s) 217, 436, 484, 667
Hpy188I TCNGA 1 cut(s) 235
Hpy188III TCNNGA 3 cut(s) 63, 496, 607
Hpy8I GTNNAC 4 cut(s) 217, 436, 484, 667
Hpy99I CGWCG 7 cut(s) 77, 212, 224, 227, 535, 641, 668
HpyAV CCTTC 2 cut(s) 61, 742
HpyCH4III ACNGT 3 cut(s) 418, 433, 440
HpyCH4IV ACGT 4 cut(s) 120, 222, 561, 690
HpyCH4V TGCA 2 cut(s) 543, 648
HpyF10VI GCNNNNNNNGC 9 cut(s) 102, 111, 168, 266, 354, 549, 769, 845, 847
HpyF3I CTNAG 1 cut(s) 234
HpySE526I ACGT 4 cut(s) 120, 222, 561, 690
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 9 cut(s) 231, 408, 512, 586, 703, 787, 792, 805, 829
HspAI GCGC 7 cut(s) 162, 550, 565, 596, 839, 848, 974
Ksp22I TGATCA 2 cut(s) 585, 780
Kzo9I GATC 6 cut(s) 285, 575, 585, 609, 780, 964
LmnI GCTCC 5 cut(s) 22, 281, 332, 362, 696
Lsp1109I GCAGC 2 cut(s) 632, 964
LweI GCATC 4 cut(s) 105, 455, 657, 826
MaeI CTAG 1 cut(s) 254
MaeII ACGT 4 cut(s) 120, 222, 561, 690
MalI GATC 6 cut(s) 287, 577, 587, 611, 782, 966
MbiI CCGCTC 2 cut(s) 299, 327
MboI GATC 6 cut(s) 285, 575, 585, 609, 780, 964
MflI RGATCY 3 cut(s) 285, 575, 609
MhlI GDGCHC 6 cut(s) 158, 189, 342, 573, 606, 723
MlsI TGGCCA 1 cut(s) 917
MluCI AATT 1 cut(s) 755
MluNI TGGCCA 1 cut(s) 917
MlyI GAGTC 5 cut(s) 60, 68, 239, 245, 380
MmeI TCCRAC 1 cut(s) 339
Mox20I TGGCCA 1 cut(s) 917
MscI TGGCCA 1 cut(s) 917
MseI TTAA 2 cut(s) 282, 678
MslI CAYNNNNRTG 1 cut(s) 513
Msp20I TGGCCA 1 cut(s) 917
MspI CCGG 4 cut(s) 159, 308, 573, 710
MspR9I CCNGG 4 cut(s) 159, 308, 573, 614
MvaI CCWGG 1 cut(s) 614
MvnI CGCG 9 cut(s) 348, 384, 530, 552, 567, 596, 740, 850, 875
MwoI GCNNNNNNNGC 9 cut(s) 102, 111, 168, 266, 354, 549, 769, 845, 847
NciI CCSGG 3 cut(s) 159, 308, 573
NdeII GATC 6 cut(s) 285, 575, 585, 609, 780, 964
NlaIII CATG 9 cut(s) 231, 408, 512, 586, 703, 787, 792, 805, 829
NlaIV GGNNCC 7 cut(s) 156, 157, 277, 500, 577, 708, 961
NmeAIII GCCGAG 1 cut(s) 81
NspI RCATGY 1 cut(s) 805
NspV TTCGAA 1 cut(s) 454
PaeR7I CTCGAG 1 cut(s) 605
PciI ACATGT 1 cut(s) 801
PcsI WCGNNNNNNNCGW 5 cut(s) 33, 195, 204, 216, 477
Pfl23II CGTACG 1 cut(s) 795
PflFI GACNNNGTC 1 cut(s) 416
PkrI GCNGC 6 cut(s) 113, 262, 383, 647, 765, 954
PleI GAGTC 5 cut(s) 60, 67, 239, 244, 380
PpsI GAGTC 5 cut(s) 60, 67, 239, 244, 380
PscI ACATGT 1 cut(s) 801
Psp124BI GAGCTC 2 cut(s) 189, 606
Psp6I CCWGG 1 cut(s) 612
PspGI CCWGG 1 cut(s) 612
PspLI CGTACG 1 cut(s) 795
PspN4I GGNNCC 7 cut(s) 156, 157, 277, 500, 577, 708, 961
PspOMI GGGCCC 1 cut(s) 154
PspPI GGNCC 4 cut(s) 154, 155, 429, 960
PsuI RGATCY 3 cut(s) 285, 575, 609
PsyI GACNNNGTC 1 cut(s) 416
RsaI GTAC 4 cut(s) 635, 797, 854, 922
RsaNI GTAC 4 cut(s) 634, 796, 853, 921
RseI CAYNNNNRTG 1 cut(s) 513
SacI GAGCTC 2 cut(s) 189, 606
SalI GTCGAC 1 cut(s) 665
SaqAI TTAA 2 cut(s) 282, 678
SatI GCNGC 6 cut(s) 112, 261, 382, 646, 764, 953
Sau3AI GATC 6 cut(s) 285, 575, 585, 609, 780, 964
Sau96I GGNCC 4 cut(s) 154, 155, 429, 960
ScaI AGTACT 1 cut(s) 922
SchI GAGTC 5 cut(s) 60, 68, 239, 245, 380
ScrFI CCNGG 4 cut(s) 159, 308, 573, 614
SduI GDGCHC 6 cut(s) 158, 189, 342, 573, 606, 723
SfaNI GCATC 4 cut(s) 105, 455, 657, 826
Sfr274I CTCGAG 1 cut(s) 605
SfuI TTCGAA 1 cut(s) 454
SinI GGWCC 2 cut(s) 429, 960
SlaI CTCGAG 1 cut(s) 605
SmiMI CAYNNNNRTG 1 cut(s) 513
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
Sse9I AATT 1 cut(s) 755
SspMI CTAG 1 cut(s) 254
SstI GAGCTC 2 cut(s) 189, 606
StyD4I CCNGG 4 cut(s) 157, 306, 571, 612
TaaI ACNGT 3 cut(s) 418, 433, 440
TaiI ACGT 4 cut(s) 123, 225, 564, 693
TaqI TCGA 5 cut(s) 126, 454, 606, 666, 674
TaqII GACCGA 1 cut(s) 977
TasI AATT 1 cut(s) 755
TatI WGTACW 1 cut(s) 920
TauI GCSGC 4 cut(s) 114, 263, 384, 766
Tru1I TTAA 2 cut(s) 282, 678
Tru9I TTAA 2 cut(s) 282, 678
TseI GCWGC 2 cut(s) 645, 952
TspGWI ACGGA 6 cut(s) 9, 25, 42, 268, 652, 881
Tth111I GACNNNGTC 1 cut(s) 416
VpaK11BI GGWCC 2 cut(s) 429, 960
XapI RAATTY 1 cut(s) 755
XceI RCATGY 1 cut(s) 805
XhoI CTCGAG 1 cut(s) 605
XmiI GTMKAC 3 cut(s) 216, 483, 666
XspI CTAG 1 cut(s) 254
ZraI GACGTC 1 cut(s) 223
ZrmI AGTACT 1 cut(s) 922
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.