Prupe.4G062000_v2.0.a1

Peroxisome biogenesis protein

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
2970388 .. 2971570
1183 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G062000.1

Sequence Viewer

Length: 975 bp
ATGCCAGTATTTAAAACCCCGTTCAACGGCTACTCCATCAAGTTCAGCCCCTTCTACGAGTCTCGGCTCGCCGTCGCCACCTCCCAAAATTTCGGCATCCTCGGCAACGGCCGCCTCCACGTTATCGACCTCTCCCCGGCCCCGCTGGGCCCCGCCGCACCCCACCAGCCAATCACCGAGCTCATCGCCTATGACACCGCCGACGGCGTATACGACGTCGCATGGTCCGAGTCCCACGACTCCCTTCTAGTCGCCGCCATCGCCGACGGCTCAGTCAAGCTCTACGACGTCGCTCTGCCCCCCGCCTCCAACCCCCTCCGCTCCCTCCATGAGCACACGCGCGAGGTCAGCTCCGCCGACTACAACCCCACGCGCCGCGACTCCTTCCTCACCTCCTCCTGGGACGACACCGTCAAGCTGTGGACCGTTGACCGGCCCGCCTCCGTCCGGACCTTCAAGGAGCACGCCTACTGCGTCTACTCCGCCGTCTGGAACCCTCGCCACGCCGACGTCTTCGCCTCCGCCTCCGGCGACTGCACCCTACGCGTCTGGGACGTGCGTGAGCCTGGCTCCACCATGATCATCCCCGCTCACGAGCTCGAGATCCTCGCGTGCGATTGGAACAAGTACGACGACTGCTGCATCTCCACGGCCTCCGTCGACAAGTCGATCAAAGTTTGGGACGTGAGGAGCATTAGGGTTCCGATCTCGGTGCTCAACGGCCACAGCTACGCGGTGAGGAAAATCAAGTTCTCGCCGCACAGGCAGAGCTTGATGATGTCGTGCTCATACGACATGTCGGTTTGCTTGTGGGATTATATGATGGAGGACGCGCTGGTAGCTCGGTACGACCATCACACCGAATTCGTGGTTGGTGTGGATATGAGTGTTCTTGTGGAGGGGCTTCTGGCAAGTACTGGCTGGGATGAGCTTGCGTACGTTTGGCAGCACGGGACCGACCCCAGAGCGCCTTAA

Protein Analysis

325

Amino Acids

36.21

Weight (kDa)

5.38

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015051)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G29260
fragaria_vesca FvH4_3g07730
malus_domestica MD05G1300300.v1.1 MD10G1279400.v1.1
prunus_persica Prupe.4G062000_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0010881
rosa_laevigata RLG00000031794
rosa_multiflora Rmu_sc0000109.1_g000002
rosa_roxburghii Rroxscaffold_1G00065480
rosa_rugosa Rorug04G0453500
rosa_samantha Rh5AG086200 Rh5BG080400 Rh5CG092900 Rh5DG080600
rosa_wichuraiana Rw0G017460 Rw0G017910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 272, 410
AatII GACGTC 3 cut(s) 219, 291, 513
AccBSI CCGCTC 2 cut(s) 321, 590
AccI GTMKAC 3 cut(s) 210, 477, 660
AccII CGCG 8 cut(s) 340, 342, 373, 378, 546, 611, 734, 833
AccIII TCCGGA 1 cut(s) 447
AclWI GGATC 1 cut(s) 598
AcoI YGGCCR 2 cut(s) 109, 721
AcsI RAATTY 2 cut(s) 88, 863
AcyI GRCGYC 3 cut(s) 216, 288, 510
AfaI GTAC 4 cut(s) 629, 848, 916, 938
AfiI CCNNNNNNNGG 6 cut(s) 26, 136, 399, 432, 447, 489
AflIII ACRYGT 2 cut(s) 544, 795
AgsI TTSAA 2 cut(s) 25, 457
AjiI CACGTC 2 cut(s) 556, 685
AjnI CCWGG 2 cut(s) 398, 565
AjuI GAANNNNNNNTTGG 2 cut(s) 855, 887
AluBI AGCT 9 cut(s) 181, 280, 351, 418, 598, 729, 771, 842, 931
AluI AGCT 9 cut(s) 181, 280, 351, 418, 598, 729, 771, 842, 931
Alw21I GWGCWC 6 cut(s) 183, 336, 465, 600, 717, 788
Alw26I GTCTC 1 cut(s) 66
AlwI GGATC 1 cut(s) 598
Ama87I CYCGRG 1 cut(s) 599
Aor13HI TCCGGA 1 cut(s) 447
AoxI GGCC 6 cut(s) 109, 138, 148, 434, 651, 721
ApaI GGGCCC 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 639, 946
ApoI RAATTY 2 cut(s) 88, 863
AspLEI GCGC 4 cut(s) 342, 375, 835, 970
AspS9I GGNCC 8 cut(s) 139, 148, 149, 225, 423, 435, 450, 954
AsuC2I CCSGG 1 cut(s) 137
AsuHPI GGTGA 3 cut(s) 166, 382, 748
AvaI CYCGRG 1 cut(s) 599
AvaII GGWCC 4 cut(s) 225, 423, 450, 954
BaeGI GKGCMC 1 cut(s) 152
BanII GRGCYC 3 cut(s) 152, 183, 600
BauI CACGAG 1 cut(s) 593
BbsI GAAGAC 1 cut(s) 505
Bbv12I GWGCWC 6 cut(s) 183, 336, 465, 600, 717, 788
BbvI GCAGC 2 cut(s) 626, 958
BccI CCATC 4 cut(s) 44, 266, 817, 861
BceAI ACGGC 8 cut(s) 43, 56, 124, 220, 283, 470, 666, 736
BcgI CGANNNNNNTGC 2 cut(s) 694, 728
BciT130I CCWGG 2 cut(s) 400, 567
BclI TGATCA 1 cut(s) 579
BcnI CCSGG 1 cut(s) 137
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 1 cut(s) 248
BfoI RGCGCY 1 cut(s) 971
BglI GCCNNNNNGGC 1 cut(s) 763
BisI GCNGC 7 cut(s) 112, 156, 255, 376, 640, 758, 947
BlsI GCNGC 7 cut(s) 113, 157, 256, 377, 641, 759, 948
BmcAI AGTACT 1 cut(s) 916
Bme1390I CCNGG 3 cut(s) 137, 400, 567
Bme18I GGWCC 4 cut(s) 225, 423, 450, 954
BmeT110I CYCGRG 1 cut(s) 599
BmgBI CACGTC 2 cut(s) 556, 685
BmgT120I GGNCC 8 cut(s) 139, 148, 149, 225, 423, 435, 450, 954
BmiI GGNNCC 7 cut(s) 141, 150, 151, 494, 571, 702, 955
BmrFI CCNGG 3 cut(s) 137, 400, 567
BmsI GCATC 2 cut(s) 105, 651
BpiI GAAGAC 1 cut(s) 505
BplI GAGNNNNNCTC 4 cut(s) 335, 367, 554, 586
BpuMI CCSGG 1 cut(s) 137
BsaHI GRCGYC 3 cut(s) 216, 288, 510
BsaJI CCNNGG 4 cut(s) 100, 135, 399, 648
BsaWI WCCGGW 1 cut(s) 447
BsaXI ACNNNNNCTCC 2 cut(s) 17, 47
Bsc4I CCNNNNNNNGG 6 cut(s) 26, 136, 399, 432, 447, 489
Bse118I RCCGGY 1 cut(s) 432
Bse1I ACTGG 2 cut(s) 5, 922
BseAI TCCGGA 1 cut(s) 447
BseBI CCWGG 2 cut(s) 400, 567
BseDI CCNNGG 4 cut(s) 100, 135, 399, 648
BseGI GGATG 3 cut(s) 96, 582, 931
BseLI CCNNNNNNNGG 6 cut(s) 26, 136, 399, 432, 447, 489
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 2 cut(s) 5, 922
BseRI GAGGAG 2 cut(s) 385, 703
BseSI GKGCMC 1 cut(s) 152
BseX3I CGGCCG 1 cut(s) 109
BseXI GCAGC 2 cut(s) 626, 958
BseYI CCCAGC 2 cut(s) 145, 921
BsgI GTGCAG 1 cut(s) 520
Bsh1236I CGCG 8 cut(s) 340, 342, 373, 378, 546, 611, 734, 833
Bsh1285I CGRYCG 1 cut(s) 112
BshFI GGCC 6 cut(s) 111, 140, 150, 436, 653, 723
BsiEI CGRYCG 1 cut(s) 112
BsiHKAI GWGCWC 6 cut(s) 183, 336, 465, 600, 717, 788
BsiHKCI CYCGRG 1 cut(s) 599
BsiSI CCGG 4 cut(s) 137, 433, 448, 528
BsiWI CGTACG 1 cut(s) 936
BslFI GGGAC 5 cut(s) 217, 416, 566, 695, 967
BslI CCNNNNNNNGG 6 cut(s) 26, 136, 399, 432, 447, 489
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 5 cut(s) 217, 416, 566, 695, 967
BsnI GGCC 6 cut(s) 111, 140, 150, 436, 653, 723
BsoBI CYCGRG 1 cut(s) 599
Bsp120I GGGCCC 1 cut(s) 148
Bsp1286I GDGCHC 7 cut(s) 152, 183, 336, 465, 600, 717, 788
Bsp13I TCCGGA 1 cut(s) 447
Bsp143I GATC 4 cut(s) 579, 603, 669, 705
BspANI GGCC 6 cut(s) 111, 140, 150, 436, 653, 723
BspCNI CTCAG 1 cut(s) 284
BspEI TCCGGA 1 cut(s) 447
BspFNI CGCG 8 cut(s) 340, 342, 373, 378, 546, 611, 734, 833
BspLI GGNNCC 7 cut(s) 141, 150, 151, 494, 571, 702, 955
BspPI GGATC 1 cut(s) 598
BsrBI CCGCTC 2 cut(s) 321, 590
BsrFI RCCGGY 1 cut(s) 432
BsrI ACTGG 2 cut(s) 5, 922
BssAI RCCGGY 1 cut(s) 432
BssECI CCNNGG 4 cut(s) 100, 135, 399, 648
BssMI GATC 4 cut(s) 579, 603, 669, 705
BssNAI GTATAC 1 cut(s) 211
BssNI GRCGYC 3 cut(s) 216, 288, 510
BssSI CACGAG 1 cut(s) 593
Bst1107I GTATAC 1 cut(s) 211
Bst2BI CACGAG 1 cut(s) 593
Bst2UI CCWGG 2 cut(s) 400, 567
Bst4CI ACNGT 2 cut(s) 412, 427
BstACI GRCGYC 3 cut(s) 216, 288, 510
BstC8I GCNNGC 5 cut(s) 69, 438, 465, 613, 933
BstDEI CTNAG 1 cut(s) 271
BstDSI CCRYGG 1 cut(s) 648
BstF5I GGATG 3 cut(s) 96, 582, 931
BstFNI CGCG 8 cut(s) 340, 342, 373, 378, 546, 611, 734, 833
BstH2I RGCGCY 1 cut(s) 971
BstHHI GCGC 4 cut(s) 342, 375, 835, 970
BstKTI GATC 4 cut(s) 582, 606, 672, 708
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 4 cut(s) 579, 603, 669, 705
BstMCI CGRYCG 1 cut(s) 112
BstMWI GCNNNNNNNGC 7 cut(s) 102, 111, 260, 348, 543, 763, 839
BstNI CCWGG 2 cut(s) 400, 567
BstNSI RCATGY 1 cut(s) 799
BstSCI CCNGG 3 cut(s) 135, 398, 565
BstSLI GKGCMC 1 cut(s) 152
BstUI CGCG 8 cut(s) 340, 342, 373, 378, 546, 611, 734, 833
BstV1I GCAGC 2 cut(s) 626, 958
BstV2I GAAGAC 1 cut(s) 505
BstX2I RGATCY 1 cut(s) 603
BstYI RGATCY 1 cut(s) 603
BstZ17I GTATAC 1 cut(s) 211
BstZI CGGCCG 1 cut(s) 109
BsuRI GGCC 6 cut(s) 111, 140, 150, 436, 653, 723
BtgI CCRYGG 1 cut(s) 648
BtgZI GCGATG 2 cut(s) 169, 244
BtrI CACGTC 2 cut(s) 556, 685
BtsCI GGATG 3 cut(s) 96, 582, 931
Cac8I GCNNGC 5 cut(s) 69, 438, 465, 613, 933
CfoI GCGC 4 cut(s) 342, 375, 835, 970
Cfr10I RCCGGY 1 cut(s) 432
Cfr13I GGNCC 8 cut(s) 139, 148, 149, 225, 423, 435, 450, 954
CseI GACGC 3 cut(s) 463, 535, 839
Csp6I GTAC 4 cut(s) 628, 847, 915, 937
CviAII CATG 4 cut(s) 222, 329, 577, 796
CviQI GTAC 4 cut(s) 628, 847, 915, 937
DdeI CTNAG 1 cut(s) 271
DpnI GATC 4 cut(s) 581, 605, 671, 707
DpnII GATC 4 cut(s) 579, 603, 669, 705
DraI TTTAAA 1 cut(s) 13
DrdI GACNNNNNNGTC 2 cut(s) 272, 410
DseDI GACNNNNNNGTC 2 cut(s) 272, 410
EaeI YGGCCR 2 cut(s) 109, 721
EagI CGGCCG 1 cut(s) 109
EciI GGCGGA 3 cut(s) 343, 472, 511
Ecl136II GAGCTC 2 cut(s) 181, 598
EclXI CGGCCG 1 cut(s) 109
Eco24I GRGCYC 3 cut(s) 152, 183, 600
Eco47I GGWCC 4 cut(s) 225, 423, 450, 954
Eco52I CGGCCG 1 cut(s) 109
Eco53kI GAGCTC 2 cut(s) 181, 598
Eco88I CYCGRG 1 cut(s) 599
EcoICRI GAGCTC 2 cut(s) 181, 598
EcoO109I RGGNCCY 1 cut(s) 149
EcoRI GAATTC 1 cut(s) 863
EcoRII CCWGG 2 cut(s) 398, 565
EcoT38I GRGCYC 3 cut(s) 152, 183, 600
FaeI CATG 4 cut(s) 225, 332, 580, 799
FaqI GGGAC 5 cut(s) 217, 416, 566, 695, 967
FatI CATG 4 cut(s) 221, 328, 576, 795
FauI CCCGC 5 cut(s) 150, 160, 310, 445, 595
FbaI TGATCA 1 cut(s) 579
FblI GTMKAC 3 cut(s) 210, 477, 660
Fnu4HI GCNGC 7 cut(s) 112, 156, 255, 376, 640, 758, 947
FokI GGATG 3 cut(s) 83, 569, 938
FriOI GRGCYC 3 cut(s) 152, 183, 600
Fsp4HI GCNGC 7 cut(s) 112, 156, 255, 376, 640, 758, 947
FspBI CTAG 1 cut(s) 248
GlaI GCGC 4 cut(s) 341, 374, 834, 969
GluI GCNGC 7 cut(s) 112, 156, 255, 376, 640, 758, 947
GsaI CCCAGC 2 cut(s) 149, 925
HaeII RGCGCY 1 cut(s) 971
HaeIII GGCC 6 cut(s) 111, 140, 150, 436, 653, 723
HapII CCGG 4 cut(s) 137, 433, 448, 528
HgaI GACGC 3 cut(s) 463, 535, 839
HhaI GCGC 4 cut(s) 342, 375, 835, 970
Hin1I GRCGYC 3 cut(s) 216, 288, 510
Hin1II CATG 4 cut(s) 225, 332, 580, 799
Hin6I GCGC 4 cut(s) 340, 373, 833, 968
HinP1I GCGC 4 cut(s) 340, 373, 833, 968
HincII GTYRAC 2 cut(s) 430, 661
HindII GTYRAC 2 cut(s) 430, 661
HinfI GANTC 4 cut(s) 59, 230, 239, 380
HpaII CCGG 4 cut(s) 137, 433, 448, 528
HphI GGTGA 3 cut(s) 166, 382, 748
Hpy166II GTNNAC 5 cut(s) 211, 423, 430, 478, 661
Hpy188I TCNGA 2 cut(s) 229, 705
Hpy188III TCNNGA 4 cut(s) 448, 490, 593, 601
Hpy8I GTNNAC 5 cut(s) 211, 423, 430, 478, 661
HpyAV CCTTC 4 cut(s) 61, 254, 394, 463
HpyCH4III ACNGT 2 cut(s) 412, 427
HpyCH4IV ACGT 7 cut(s) 120, 216, 288, 510, 555, 684, 939
HpyCH4V TGCA 2 cut(s) 537, 642
HpyF10VI GCNNNNNNNGC 7 cut(s) 102, 111, 260, 348, 543, 763, 839
HpyF3I CTNAG 1 cut(s) 271
HpySE526I ACGT 7 cut(s) 120, 216, 288, 510, 555, 684, 939
Hsp92I GRCGYC 3 cut(s) 216, 288, 510
Hsp92II CATG 4 cut(s) 225, 332, 580, 799
HspAI GCGC 4 cut(s) 340, 373, 833, 968
Kpn2I TCCGGA 1 cut(s) 447
Ksp22I TGATCA 1 cut(s) 579
Kzo9I GATC 4 cut(s) 579, 603, 669, 705
LmnI GCTCC 5 cut(s) 326, 356, 460, 575, 690
Lsp1109I GCAGC 2 cut(s) 626, 958
LweI GCATC 2 cut(s) 105, 651
MaeI CTAG 1 cut(s) 248
MaeII ACGT 7 cut(s) 120, 216, 288, 510, 555, 684, 939
MalI GATC 4 cut(s) 581, 605, 671, 707
MbiI CCGCTC 2 cut(s) 321, 590
MboI GATC 4 cut(s) 579, 603, 669, 705
MboII GAAGA 1 cut(s) 505
MflI RGATCY 1 cut(s) 603
MhlI GDGCHC 7 cut(s) 152, 183, 336, 465, 600, 717, 788
MluCI AATT 2 cut(s) 88, 863
MluI ACGCGT 1 cut(s) 544
MlyI GAGTC 4 cut(s) 68, 233, 239, 374
MmeI TCCRAC 1 cut(s) 333
MroI TCCGGA 1 cut(s) 447
MseI TTAA 2 cut(s) 12, 973
MspA1I CMGCKG 1 cut(s) 145
MspI CCGG 4 cut(s) 137, 433, 448, 528
MspR9I CCNGG 3 cut(s) 137, 400, 567
MvaI CCWGG 2 cut(s) 400, 567
MvnI CGCG 8 cut(s) 340, 342, 373, 378, 546, 611, 734, 833
MwoI GCNNNNNNNGC 7 cut(s) 102, 111, 260, 348, 543, 763, 839
NciI CCSGG 1 cut(s) 137
NdeII GATC 4 cut(s) 579, 603, 669, 705
NlaIII CATG 4 cut(s) 225, 332, 580, 799
NlaIV GGNNCC 7 cut(s) 141, 150, 151, 494, 571, 702, 955
NmeAIII GCCGAG 2 cut(s) 43, 81
NspI RCATGY 1 cut(s) 799
PaeR7I CTCGAG 1 cut(s) 599
PciI ACATGT 1 cut(s) 795
PcsI WCGNNNNNNNCGW 3 cut(s) 210, 225, 471
Pfl23II CGTACG 1 cut(s) 936
PflFI GACNNNGTC 1 cut(s) 410
PkrI GCNGC 7 cut(s) 113, 157, 256, 377, 641, 759, 948
PleI GAGTC 4 cut(s) 67, 233, 238, 374
PpsI GAGTC 4 cut(s) 67, 233, 238, 374
PscI ACATGT 1 cut(s) 795
Psp124BI GAGCTC 2 cut(s) 183, 600
Psp6I CCWGG 2 cut(s) 398, 565
PspFI CCCAGC 2 cut(s) 145, 921
PspGI CCWGG 2 cut(s) 398, 565
PspLI CGTACG 1 cut(s) 936
PspN4I GGNNCC 7 cut(s) 141, 150, 151, 494, 571, 702, 955
PspOMI GGGCCC 1 cut(s) 148
PspPI GGNCC 8 cut(s) 139, 148, 149, 225, 423, 435, 450, 954
PsuI RGATCY 1 cut(s) 603
PsyI GACNNNGTC 1 cut(s) 410
RsaI GTAC 4 cut(s) 629, 848, 916, 938
RsaNI GTAC 4 cut(s) 628, 847, 915, 937
SacI GAGCTC 2 cut(s) 183, 600
SalI GTCGAC 1 cut(s) 659
SaqAI TTAA 2 cut(s) 12, 973
SatI GCNGC 7 cut(s) 112, 156, 255, 376, 640, 758, 947
Sau3AI GATC 4 cut(s) 579, 603, 669, 705
Sau96I GGNCC 8 cut(s) 139, 148, 149, 225, 423, 435, 450, 954
ScaI AGTACT 1 cut(s) 916
SchI GAGTC 4 cut(s) 68, 233, 239, 374
ScrFI CCNGG 3 cut(s) 137, 400, 567
SduI GDGCHC 7 cut(s) 152, 183, 336, 465, 600, 717, 788
SfaNI GCATC 2 cut(s) 105, 651
Sfr274I CTCGAG 1 cut(s) 599
SinI GGWCC 4 cut(s) 225, 423, 450, 954
SlaI CTCGAG 1 cut(s) 599
SmlI CTYRAG 1 cut(s) 599
SmoI CTYRAG 1 cut(s) 599
Sse9I AATT 2 cut(s) 88, 863
SspMI CTAG 1 cut(s) 248
SstI GAGCTC 2 cut(s) 183, 600
StyD4I CCNGG 3 cut(s) 135, 398, 565
TaaI ACNGT 2 cut(s) 412, 427
TaiI ACGT 7 cut(s) 123, 219, 291, 513, 558, 687, 942
TaqI TCGA 4 cut(s) 126, 600, 660, 668
TaqII GACCGA 1 cut(s) 971
TasI AATT 2 cut(s) 88, 863
TatI WGTACW 1 cut(s) 914
TauI GCSGC 5 cut(s) 114, 158, 257, 378, 760
Tru1I TTAA 2 cut(s) 12, 973
Tru9I TTAA 2 cut(s) 12, 973
TseI GCWGC 2 cut(s) 639, 946
TspGWI ACGGA 2 cut(s) 433, 646
Tth111I GACNNNGTC 1 cut(s) 410
VpaK11BI GGWCC 4 cut(s) 225, 423, 450, 954
XapI RAATTY 2 cut(s) 88, 863
XceI RCATGY 1 cut(s) 799
XhoI CTCGAG 1 cut(s) 599
XmiI GTMKAC 3 cut(s) 210, 477, 660
XspI CTAG 1 cut(s) 248
ZraI GACGTC 3 cut(s) 217, 289, 511
ZrmI AGTACT 1 cut(s) 916
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.