Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011133

Physical Location & Seq

Genomic Coordinates Forward (+)

10244453 .. 10245874

Gene Structure 1422 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G29290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCCGTTCGTCTAATTCCGACCATCTGGCTCTTCATAGTCTTTGCCGTCATCGTGTCAGCCTTGCCTTCGCTGGTATCTTCAAGAAAACTGTTGGAGGTGAAGAAACAAGAAAACTTGACGGTGAGAGAGGAAGAGAAGAGTCACATGCCTCATGTGACCAAAACTAGTACGTTAAGTGCTCTACCAAAGGGGAAAATTCCCAACTCGACACCGAGCAAAAAGGGTCACGCGGCCGTCTTCGCCGGAAAGCTCCGATCACGACATCTCTCCACCGTTGATCGGTATCTCCGATCCGTTCCTAGTCCCGGTGTTGGCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009966 GO:0010033 GO:0010037 GO:0010469 GO:0010646 GO:0015698 GO:0015706 GO:0023051 GO:0030545 GO:0042221 GO:0042493 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0065007 GO:0065009 GO:0071705 GO:0072347 GO:0098772 GO:1901700 GO:1902025 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

107

Amino Acids

11.76

Weight (kDa)

10.82

Isoelectric Point (pI)

47.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29290
fragaria_vesca	FvH4_3g07300
malus_domestica	MD00G1009200.v1.1 MD00G1221100.v1.1 MD10G1275500.v1.1
prunus_persica	Prupe.4G067000_v2.0.a1
pyrus_communis	pycom05g27420 pycom10g23010
rosa_chinensis	RchiOBHm_Chr5g0011661
rosa_laevigata	RLG00000031852
rosa_multiflora	Rmu_sc0000437.1_g000005 Rmu_sc0006382.1_g000003 Rmu_sc0017389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064850
rosa_rugosa	Rorug04G0458300
rosa_samantha	Rh5AG090100 Rh5BG085800 Rh5CG099500 Rh5DG085500
rosa_wichuraiana	Rw5G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	233
AciI	CCGC	1 cut(s)	233
AclWI	GGATC	1 cut(s)	288
AcoI	YGGCCR	3 cut(s)	3, 234, 316
AcsI	RAATTY	1 cut(s)	198
AfaI	GTAC	1 cut(s)	172
AfiI	CCNNNNNNNGG	3 cut(s)	282, 308, 314
AgsI	TTSAA	1 cut(s)	84
AhlI	ACTAGT	1 cut(s)	167
AluBI	AGCT	1 cut(s)	253
AluI	AGCT	1 cut(s)	253
Alw21I	GWGCWC	1 cut(s)	184
AlwI	GGATC	1 cut(s)	288
AoxI	GGCC	3 cut(s)	3, 234, 316
ApoI	RAATTY	1 cut(s)	198
AsuC2I	CCSGG	1 cut(s)	309
AsuHPI	GGTGA	2 cut(s)	112, 136
BalI	TGGCCA	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	232
Bbv12I	GWGCWC	1 cut(s)	184
BccI	CCATC	1 cut(s)	32
BceAI	ACGGC	2 cut(s)	32, 221
BcnI	CCSGG	1 cut(s)	309
BcuI	ACTAGT	1 cut(s)	167
BfaI	CTAG	2 cut(s)	168, 303
BisI	GCNGC	1 cut(s)	234
BlsI	GCNGC	1 cut(s)	235
Bme1390I	CCNGG	1 cut(s)	309
BmrFI	CCNGG	1 cut(s)	309
BpiI	GAAGAC	1 cut(s)	232
BpuMI	CCSGG	1 cut(s)	309
BsaBI	GATNNNNATC	1 cut(s)	285
Bsc4I	CCNNNNNNNGG	3 cut(s)	282, 308, 314
Bse8I	GATNNNNATC	1 cut(s)	285
BseJI	GATNNNNATC	1 cut(s)	285
BseLI	CCNNNNNNNGG	3 cut(s)	282, 308, 314
BseX3I	CGGCCG	1 cut(s)	234
Bsh1236I	CGCG	1 cut(s)	233
Bsh1285I	CGRYCG	1 cut(s)	237
BshFI	GGCC	3 cut(s)	5, 236, 318
BsiEI	CGRYCG	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	246, 309
BslFI	GGGAC	1 cut(s)	291
BslI	CCNNNNNNNGG	3 cut(s)	282, 308, 314
BsmFI	GGGAC	1 cut(s)	291
BsnI	GGCC	3 cut(s)	5, 236, 318
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	257, 280, 293
BspACI	CCGC	1 cut(s)	233
BspANI	GGCC	3 cut(s)	5, 236, 318
BspFNI	CGCG	1 cut(s)	233
BspPI	GGATC	1 cut(s)	288
BspQI	GCTCTTC	1 cut(s)	38
BssMI	GATC	3 cut(s)	257, 280, 293
Bst4CI	ACNGT	3 cut(s)	93, 124, 277
Bst6I	CTCTTC	3 cut(s)	38, 129, 134
BstFNI	CGCG	1 cut(s)	233
BstKTI	GATC	3 cut(s)	260, 283, 296
BstMBI	GATC	3 cut(s)	257, 280, 293
BstMCI	CGRYCG	1 cut(s)	237
BstMWI	GCNNNNNNNGC	1 cut(s)	242
BstNSI	RCATGY	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	307
BstUI	CGCG	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	232
BstZI	CGGCCG	1 cut(s)	234
BsuRI	GGCC	3 cut(s)	5, 236, 318
Csp6I	GTAC	1 cut(s)	171
CviAII	CATG	2 cut(s)	148, 155
CviJI	RGCY	6 cut(s)	5, 31, 62, 236, 253, 318
CviKI_1	RGCY	6 cut(s)	5, 31, 62, 236, 253, 318
CviQI	GTAC	1 cut(s)	171
DpnI	GATC	3 cut(s)	259, 282, 295
DpnII	GATC	3 cut(s)	257, 280, 293
EaeI	YGGCCR	3 cut(s)	3, 234, 316
EagI	CGGCCG	1 cut(s)	234
Eam1104I	CTCTTC	3 cut(s)	38, 129, 134
EarI	CTCTTC	3 cut(s)	38, 129, 134
EclXI	CGGCCG	1 cut(s)	234
Eco52I	CGGCCG	1 cut(s)	234
FaeI	CATG	2 cut(s)	151, 158
FaiI	YATR	3 cut(s)	38, 149, 156
FaqI	GGGAC	1 cut(s)	291
FatI	CATG	2 cut(s)	147, 154
Fnu4HI	GCNGC	1 cut(s)	234
Fsp4HI	GCNGC	1 cut(s)	234
FspBI	CTAG	2 cut(s)	168, 303
GluI	GCNGC	1 cut(s)	234
HaeIII	GGCC	3 cut(s)	5, 236, 318
HapII	CCGG	2 cut(s)	246, 309
Hin1II	CATG	2 cut(s)	151, 158
HinfI	GANTC	1 cut(s)	142
HpaII	CCGG	2 cut(s)	246, 309
HphI	GGTGA	2 cut(s)	112, 136
Hpy188I	TCNGA	3 cut(s)	21, 257, 293
Hpy188III	TCNNGA	2 cut(s)	84, 261
HpyAV	CCTTC	1 cut(s)	78
HpyCH4III	ACNGT	3 cut(s)	93, 124, 277
HpyCH4IV	ACGT	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	1 cut(s)	242
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	151, 158
Kzo9I	GATC	3 cut(s)	257, 280, 293
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	1 cut(s)	258
LpnPI	CCDG	3 cut(s)	13, 59, 259
MaeI	CTAG	2 cut(s)	168, 303
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	3 cut(s)	143, 157, 227
MalI	GATC	3 cut(s)	259, 282, 295
MboI	GATC	3 cut(s)	257, 280, 293
MboII	GAAGA	6 cut(s)	25, 72, 115, 146, 151, 232
MhlI	GDGCHC	1 cut(s)	184
MlsI	TGGCCA	1 cut(s)	318
MluCI	AATT	2 cut(s)	15, 198
MluNI	TGGCCA	1 cut(s)	318
MlyI	GAGTC	1 cut(s)	151
MmeI	TCCRAC	2 cut(s)	44, 75
MnlI	CCTC	3 cut(s)	91, 124, 162
Mox20I	TGGCCA	1 cut(s)	318
MscI	TGGCCA	1 cut(s)	318
MseI	TTAA	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	318
MspI	CCGG	2 cut(s)	246, 309
MspR9I	CCNGG	1 cut(s)	309
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	1 cut(s)	242
NciI	CCSGG	1 cut(s)	309
NdeII	GATC	3 cut(s)	257, 280, 293
NlaIII	CATG	2 cut(s)	151, 158
NmuCI	GTSAC	3 cut(s)	143, 157, 227
NspI	RCATGY	1 cut(s)	151
PciSI	GCTCTTC	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	1 cut(s)	289
PkrI	GCNGC	1 cut(s)	235
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
RsaI	GTAC	1 cut(s)	172
RsaNI	GTAC	1 cut(s)	171
SapI	GCTCTTC	1 cut(s)	38
SaqAI	TTAA	1 cut(s)	176
SatI	GCNGC	1 cut(s)	234
Sau3AI	GATC	3 cut(s)	257, 280, 293
SchI	GAGTC	1 cut(s)	151
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	3 cut(s)	102, 176, 255
SpeI	ACTAGT	1 cut(s)	167
Sse9I	AATT	2 cut(s)	15, 198
SsiI	CCGC	1 cut(s)	233
SspMI	CTAG	2 cut(s)	168, 303
StyD4I	CCNGG	1 cut(s)	307
TaaI	ACNGT	3 cut(s)	93, 124, 277
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	1 cut(s)	209
TasI	AATT	2 cut(s)	15, 198
TauI	GCSGC	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	176
Tru9I	TTAA	1 cut(s)	176
TseFI	GTSAC	3 cut(s)	143, 157, 227
Tsp45I	GTSAC	3 cut(s)	143, 157, 227
TspDTI	ATGAA	1 cut(s)	25
TspGWI	ACGGA	1 cut(s)	286
XapI	RAATTY	1 cut(s)	198
XceI	RCATGY	1 cut(s)	151
XspI	CTAG	2 cut(s)	168, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.