Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0011133

Physical Location & Seq

Genomic Coordinates Reverse (-)

1153322 .. 1153609

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1009200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGCCTCGTCTGACCGCTTTGGCACTGATTTTCTTAGTGGCAATGGCCTCATCTGTGTCAACTCTAGAAAGCAGAAAGCTTTTGGATGTAAAGGACGATGCCGAGAACCAAAAGAAAGTGGCTTCTCTGTTTCTAAGTGCCCTTCCGAAGGGCAAGGTGCCAGCTTCTACCCCAAGCAAGAAGGGTCACGCCGTCGTCGTCAACGAAAAGCTCATTGCCCGCCATCTTAGCGTCGTACAAAATCGGATCCTGGCGCAGTCTGTTCCCAGCCCCGGCGTCGGTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009966 GO:0010033 GO:0010037 GO:0010469 GO:0010646 GO:0015698 GO:0015706 GO:0023051 GO:0030545 GO:0042221 GO:0042493 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0065007 GO:0065009 GO:0071705 GO:0072347 GO:0098772 GO:1901700 GO:1902025 GO:2000026 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

10.08

Weight (kDa)

10.28

Isoelectric Point (pI)

38.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011133)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G29290
fragaria_vesca	FvH4_3g07300
malus_domestica	MD00G1009200.v1.1 MD00G1221100.v1.1 MD10G1275500.v1.1
prunus_persica	Prupe.4G067000_v2.0.a1
pyrus_communis	pycom05g27420 pycom10g23010
rosa_chinensis	RchiOBHm_Chr5g0011661
rosa_laevigata	RLG00000031852
rosa_multiflora	Rmu_sc0000437.1_g000005 Rmu_sc0006382.1_g000003 Rmu_sc0017389.1_g000001
rosa_roxburghii	Rroxscaffold_1G00064850
rosa_rugosa	Rorug04G0458300
rosa_samantha	Rh5AG090100 Rh5BG085800 Rh5CG099500 Rh5DG085500
rosa_wichuraiana	Rw5G007840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	157
AciI	CCGC	2 cut(s)	15, 220
AclWI	GGATC	2 cut(s)	241, 254
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	1 cut(s)	237
AfiI	CCNNNNNNNGG	3 cut(s)	148, 272, 278
AjnI	CCWGG	1 cut(s)	249
AluBI	AGCT	3 cut(s)	79, 164, 211
AluI	AGCT	3 cut(s)	79, 164, 211
AlwI	GGATC	2 cut(s)	241, 254
AoxI	GGCC	1 cut(s)	45
AspLEI	GCGC	1 cut(s)	256
AsuC2I	CCSGG	1 cut(s)	273
BaeGI	GKGCMC	1 cut(s)	142
BamHI	GGATCC	1 cut(s)	246
BanI	GGYRCC	1 cut(s)	157
BccI	CCATC	1 cut(s)	231
BceAI	ACGGC	1 cut(s)	176
BciT130I	CCWGG	1 cut(s)	251
BcnI	CCSGG	1 cut(s)	273
BfaI	CTAG	1 cut(s)	65
Bme1390I	CCNGG	2 cut(s)	251, 273
BmiI	GGNNCC	2 cut(s)	159, 248
BmrFI	CCNGG	2 cut(s)	251, 273
BmsI	GCATC	1 cut(s)	88
BpuMI	CCSGG	1 cut(s)	273
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	271
Bsc4I	CCNNNNNNNGG	3 cut(s)	148, 272, 278
Bse3DI	GCAATG	2 cut(s)	48, 213
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	271
BseGI	GGATG	1 cut(s)	91
BseLI	CCNNNNNNNGG	3 cut(s)	148, 272, 278
BseMI	GCAATG	2 cut(s)	48, 213
BseSI	GKGCMC	1 cut(s)	142
BseYI	CCCAGC	1 cut(s)	266
BshFI	GGCC	1 cut(s)	47
BshNI	GGYRCC	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	273
BslI	CCNNNNNNNGG	3 cut(s)	148, 272, 278
BsnI	GGCC	1 cut(s)	47
Bsp1286I	GDGCHC	1 cut(s)	142
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	2 cut(s)	15, 220
BspANI	GGCC	1 cut(s)	47
BspLI	GGNNCC	2 cut(s)	159, 248
BspPI	GGATC	2 cut(s)	241, 254
BspT107I	GGYRCC	1 cut(s)	157
BsrDI	GCAATG	2 cut(s)	48, 213
BssECI	CCNNGG	1 cut(s)	271
BssMI	GATC	1 cut(s)	246
BssNI	GRCGYC	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	251
BstACI	GRCGYC	1 cut(s)	276
BstC8I	GCNNGC	2 cut(s)	162, 220
BstDEI	CTNAG	3 cut(s)	34, 134, 227
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstF5I	GGATG	1 cut(s)	91
BstHHI	GCGC	1 cut(s)	256
BstKTI	GATC	1 cut(s)	249
BstMBI	GATC	1 cut(s)	246
BstMWI	GCNNNNNNNGC	1 cut(s)	228
BstNI	CCWGG	1 cut(s)	251
BstSCI	CCNGG	2 cut(s)	249, 271
BstSLI	GKGCMC	1 cut(s)	142
BstX2I	RGATCY	1 cut(s)	246
BstYI	RGATCY	1 cut(s)	246
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	23
Cac8I	GCNNGC	2 cut(s)	162, 220
CfoI	GCGC	1 cut(s)	256
CseI	GACGC	2 cut(s)	220, 265
Csp6I	GTAC	1 cut(s)	236
CviJI	RGCY	6 cut(s)	47, 79, 122, 164, 211, 270
CviKI_1	RGCY	6 cut(s)	47, 79, 122, 164, 211, 270
CviQI	GTAC	1 cut(s)	236
DdeI	CTNAG	3 cut(s)	34, 134, 227
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoRII	CCWGG	1 cut(s)	249
FauI	CCCGC	1 cut(s)	227
FokI	GGATG	1 cut(s)	98
FspBI	CTAG	1 cut(s)	65
GlaI	GCGC	1 cut(s)	255
GsaI	CCCAGC	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	273
HgaI	GACGC	2 cut(s)	220, 265
HhaI	GCGC	1 cut(s)	256
Hin1I	GRCGYC	1 cut(s)	276
Hin6I	GCGC	1 cut(s)	254
HinP1I	GCGC	1 cut(s)	254
HincII	GTYRAC	2 cut(s)	60, 202
HindII	GTYRAC	2 cut(s)	60, 202
HindIII	AAGCTT	1 cut(s)	77
HpaII	CCGG	1 cut(s)	273
Hpy166II	GTNNAC	2 cut(s)	60, 202
Hpy188I	TCNGA	3 cut(s)	12, 147, 246
Hpy188III	TCNNGA	1 cut(s)	65
Hpy8I	GTNNAC	2 cut(s)	60, 202
Hpy99I	CGWCG	4 cut(s)	197, 200, 236, 281
HpyAV	CCTTC	3 cut(s)	142, 152, 175
HpyF10VI	GCNNNNNNNGC	1 cut(s)	228
HpyF3I	CTNAG	3 cut(s)	34, 134, 227
Hsp92I	GRCGYC	1 cut(s)	276
HspAI	GCGC	1 cut(s)	254
Kzo9I	GATC	1 cut(s)	246
LpnPI	CCDG	4 cut(s)	174, 236, 263, 280
LweI	GCATC	1 cut(s)	88
MaeI	CTAG	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MflI	RGATCY	1 cut(s)	246
MhlI	GDGCHC	1 cut(s)	142
MnlI	CCTC	2 cut(s)	15, 58
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	2 cut(s)	251, 273
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	228
NciI	CCSGG	1 cut(s)	273
NdeII	GATC	1 cut(s)	246
NlaIV	GGNNCC	2 cut(s)	159, 248
NmeAIII	GCCGAG	1 cut(s)	127
NmuCI	GTSAC	1 cut(s)	185
PcsI	WCGNNNNNNNCGW	2 cut(s)	195, 201
Psp6I	CCWGG	1 cut(s)	249
PspFI	CCCAGC	1 cut(s)	266
PspGI	CCWGG	1 cut(s)	249
PspN4I	GGNNCC	2 cut(s)	159, 248
PsuI	RGATCY	1 cut(s)	246
RsaI	GTAC	1 cut(s)	237
RsaNI	GTAC	1 cut(s)	236
Sau3AI	GATC	1 cut(s)	246
ScrFI	CCNGG	2 cut(s)	251, 273
SduI	GDGCHC	1 cut(s)	142
SetI	ASST	4 cut(s)	81, 159, 166, 213
SfaNI	GCATC	1 cut(s)	88
SsiI	CCGC	2 cut(s)	15, 220
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	2 cut(s)	249, 271
TaqII	GACCGA	1 cut(s)	269
TscAI	CASTG	1 cut(s)	30
TseFI	GTSAC	1 cut(s)	185
Tsp45I	GTSAC	1 cut(s)	185
TspRI	CASTG	1 cut(s)	30
XagI	CCTNNNNNAGG	1 cut(s)	146
XbaI	TCTAGA	1 cut(s)	64
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.